==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 07-APR-05 2BO1 . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L30E; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS CELER; . AUTHOR C.F.LEE,S.S.CHA,H.S.LEE,K.B.WONG . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6265.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 69.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 10.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 32.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A M 0 0 211 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 141.0 -3.4 -4.3 21.9 2 1 A V - 0 0 27 91,-0.1 2,-0.8 1,-0.0 3,-0.1 -0.606 360.0-140.1 -73.8 132.9 0.2 -3.5 22.8 3 2 A D > - 0 0 89 -2,-0.3 4,-2.7 1,-0.2 5,-0.2 -0.863 15.0-156.3 -91.9 108.0 0.5 -0.1 24.6 4 3 A I H > S+ 0 0 36 -2,-0.8 4,-2.4 1,-0.2 -1,-0.2 0.915 88.3 44.3 -60.8 -49.3 3.7 1.2 23.0 5 4 A A H > S+ 0 0 41 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.881 114.9 50.2 -64.2 -38.2 4.8 3.6 25.7 6 5 A F H > S+ 0 0 78 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.890 110.5 49.1 -65.9 -40.0 4.0 1.0 28.4 7 6 A E H X S+ 0 0 10 -4,-2.7 4,-2.3 2,-0.2 87,-0.2 0.854 108.0 55.6 -68.7 -32.9 6.0 -1.7 26.6 8 7 A L H X S+ 0 0 2 -4,-2.4 4,-2.6 -5,-0.2 -2,-0.2 0.918 105.0 52.0 -62.3 -41.5 8.9 0.8 26.3 9 8 A R H X S+ 0 0 134 -4,-1.9 4,-1.8 2,-0.2 -2,-0.2 0.878 108.3 51.5 -62.8 -34.1 8.8 1.3 30.0 10 9 A K H X>S+ 0 0 83 -4,-1.5 4,-3.1 2,-0.2 5,-0.7 0.917 109.3 49.7 -68.7 -42.1 9.0 -2.6 30.4 11 10 A V H X5S+ 0 0 1 -4,-2.3 4,-1.8 1,-0.2 -2,-0.2 0.934 109.5 52.0 -58.1 -45.8 12.0 -2.6 28.1 12 11 A I H <5S+ 0 0 61 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.887 117.7 39.9 -59.6 -37.4 13.6 0.2 30.2 13 12 A D H <5S+ 0 0 137 -4,-1.8 -2,-0.2 -5,-0.2 -1,-0.2 0.990 136.8 7.9 -73.6 -62.0 13.0 -1.9 33.3 14 13 A S H <5S+ 0 0 46 -4,-3.1 76,-0.2 75,-0.2 -3,-0.2 0.573 121.3 54.3-106.8 -13.3 13.8 -5.5 32.3 15 14 A G S < S- 0 0 20 63,-2.6 4,-1.9 -2,-0.4 5,-0.2 0.039 83.9 -68.1 92.3 164.3 19.7 8.4 19.4 21 20 A Y H > S+ 0 0 52 2,-0.2 4,-2.9 1,-0.2 5,-0.2 0.926 121.3 45.5 -55.9 -60.0 21.2 8.4 16.0 22 21 A R H > S+ 0 0 210 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.929 118.0 41.4 -57.2 -47.9 24.9 7.6 16.7 23 22 A K H > S+ 0 0 97 -4,-0.4 4,-2.2 2,-0.2 -1,-0.2 0.847 115.1 51.9 -72.0 -31.5 24.4 4.7 19.2 24 23 A T H X S+ 0 0 0 -4,-1.9 4,-1.6 2,-0.2 -2,-0.2 0.948 108.7 50.1 -68.5 -45.7 21.5 3.3 17.1 25 24 A V H X S+ 0 0 11 -4,-2.9 4,-2.7 1,-0.2 3,-0.4 0.926 110.7 50.7 -59.1 -43.9 23.7 3.3 14.0 26 25 A Q H X S+ 0 0 114 -4,-2.2 4,-2.6 -5,-0.2 6,-0.2 0.930 107.5 53.5 -55.2 -46.7 26.4 1.5 15.9 27 26 A S H <>S+ 0 0 10 -4,-2.2 6,-1.7 1,-0.2 5,-1.4 0.788 112.5 44.6 -63.7 -26.3 23.9 -1.1 17.1 28 27 A L H <5S+ 0 0 4 -4,-1.6 3,-0.2 -3,-0.4 -1,-0.2 0.893 113.3 47.3 -82.8 -43.5 22.9 -1.8 13.5 29 28 A K H <5S+ 0 0 137 -4,-2.7 -2,-0.2 1,-0.2 -3,-0.2 0.861 118.8 43.2 -64.0 -36.8 26.4 -2.0 12.0 30 29 A M T <5S- 0 0 142 -4,-2.6 -1,-0.2 -5,-0.3 -2,-0.2 0.540 110.3-122.2 -89.1 -8.6 27.4 -4.2 14.9 31 30 A G T 5S+ 0 0 55 -4,-0.4 -3,-0.2 -3,-0.2 -4,-0.1 0.646 76.1 120.5 81.0 15.8 24.3 -6.4 14.9 32 31 A G < + 0 0 30 -5,-1.4 2,-0.3 -6,-0.2 -4,-0.2 0.625 48.2 96.4 -83.9 -16.0 23.2 -5.8 18.5 33 32 A S - 0 0 9 -6,-1.7 54,-0.2 1,-0.1 3,-0.1 -0.560 44.3-178.0 -82.1 141.0 19.8 -4.3 17.6 34 33 A K S S- 0 0 97 52,-3.4 2,-0.2 1,-0.4 53,-0.1 0.513 75.8 -10.7-102.4 -16.6 16.6 -6.3 17.6 35 34 A L E -B 86 0A 1 51,-0.6 51,-2.8 24,-0.1 -1,-0.4 -0.839 60.0-142.6-179.2 139.7 14.3 -3.5 16.4 36 35 A I E -Bc 85 61A 0 24,-2.2 26,-2.7 -2,-0.2 2,-0.5 -0.961 6.5-156.2-119.1 145.9 14.5 0.2 15.9 37 36 A I E -Bc 84 62A 0 47,-2.5 47,-2.1 -2,-0.4 2,-0.4 -0.976 15.5-162.1-121.3 112.0 11.6 2.7 16.6 38 37 A I E -Bc 83 63A 0 24,-2.2 26,-1.9 -2,-0.5 45,-0.2 -0.854 17.5-122.6-106.7 130.2 12.0 5.9 14.7 39 38 A A E > - c 0 64A 0 43,-2.7 3,-1.5 -2,-0.4 28,-0.2 -0.367 23.7-122.2 -64.0 143.8 10.1 9.2 15.5 40 39 A R T 3 S+ 0 0 149 26,-2.3 27,-0.2 24,-0.5 -1,-0.1 0.846 109.1 43.7 -58.1 -33.9 8.0 10.5 12.7 41 40 A N T 3 S+ 0 0 74 25,-0.4 -1,-0.3 2,-0.0 26,-0.1 0.108 76.3 144.4-106.8 23.9 9.8 13.8 12.6 42 41 A T S < S- 0 0 4 -3,-1.5 5,-0.1 40,-0.2 -4,-0.0 -0.369 72.2 -82.6 -57.7 137.9 13.3 12.6 12.8 43 42 A R > - 0 0 131 1,-0.1 4,-2.6 3,-0.1 3,-0.4 -0.204 46.0-123.7 -50.5 123.2 15.6 14.8 10.7 44 43 A P H > S+ 0 0 103 0, 0.0 4,-2.8 0, 0.0 5,-0.2 0.780 106.3 49.2 -48.0 -39.6 15.1 13.3 7.2 45 44 A D H > S+ 0 0 72 2,-0.2 4,-2.1 1,-0.2 5,-0.2 0.934 114.8 45.2 -68.5 -42.4 18.8 12.6 6.5 46 45 A R H > S+ 0 0 86 -3,-0.4 4,-2.6 2,-0.2 -1,-0.2 0.903 113.2 51.7 -64.1 -38.6 19.2 10.8 9.8 47 46 A K H X S+ 0 0 36 -4,-2.6 4,-2.6 2,-0.2 5,-0.2 0.939 109.3 49.1 -63.4 -48.2 15.9 9.0 9.2 48 47 A E H X S+ 0 0 129 -4,-2.8 4,-2.4 2,-0.2 -1,-0.2 0.886 111.7 50.1 -56.3 -42.5 17.0 7.8 5.8 49 48 A D H X S+ 0 0 56 -4,-2.1 4,-3.0 2,-0.2 5,-0.2 0.936 110.7 49.3 -63.0 -46.8 20.4 6.6 7.3 50 49 A L H X S+ 0 0 0 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.921 112.5 46.4 -59.2 -46.8 18.6 4.7 10.0 51 50 A E H X S+ 0 0 65 -4,-2.6 4,-2.7 2,-0.2 5,-0.2 0.908 112.3 52.8 -61.2 -43.7 16.3 3.0 7.5 52 51 A Y H X S+ 0 0 131 -4,-2.4 4,-2.5 -5,-0.2 -2,-0.2 0.936 111.8 43.3 -56.7 -52.4 19.2 2.2 5.3 53 52 A Y H X S+ 0 0 56 -4,-3.0 4,-2.1 2,-0.2 6,-0.2 0.832 112.0 54.1 -66.9 -33.2 21.3 0.6 8.1 54 53 A A H X>S+ 0 0 0 -4,-2.2 5,-2.3 -5,-0.2 4,-1.1 0.951 112.6 44.1 -63.3 -48.7 18.2 -1.3 9.4 55 54 A R H ><5S+ 0 0 210 -4,-2.7 3,-0.6 1,-0.2 -2,-0.2 0.922 112.6 52.5 -60.7 -42.3 17.6 -2.7 5.9 56 55 A L H 3<5S+ 0 0 112 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.904 116.5 38.6 -62.5 -39.1 21.3 -3.5 5.5 57 56 A S H 3<5S- 0 0 48 -4,-2.1 -1,-0.2 -5,-0.1 -2,-0.2 0.485 109.9-117.7 -90.7 -5.9 21.4 -5.4 8.7 58 57 A G T <<5 + 0 0 66 -4,-1.1 -3,-0.2 -3,-0.6 -4,-0.1 0.774 63.2 149.1 69.9 30.8 18.0 -7.1 8.4 59 58 A T < - 0 0 16 -5,-2.3 -1,-0.2 -6,-0.2 -24,-0.1 -0.806 48.1-115.6 -98.7 129.5 16.7 -5.3 11.5 60 59 A P - 0 0 55 0, 0.0 -24,-2.2 0, 0.0 2,-0.4 -0.293 24.8-149.9 -63.5 148.1 13.0 -4.5 11.7 61 60 A V E -c 36 0A 44 37,-0.3 2,-0.5 -26,-0.2 -24,-0.2 -0.974 7.8-165.4-118.1 133.0 11.8 -0.9 11.9 62 61 A Y E -c 37 0A 60 -26,-2.7 -24,-2.2 -2,-0.4 2,-0.9 -0.987 18.3-139.0-113.6 130.1 8.7 0.5 13.6 63 62 A E E -c 38 0A 102 -2,-0.5 2,-0.2 -26,-0.2 -24,-0.2 -0.792 16.1-141.7 -90.9 102.8 7.6 4.0 12.6 64 63 A F E -c 39 0A 25 -26,-1.9 -24,-0.5 -2,-0.9 7,-0.1 -0.491 5.9-144.1 -60.5 128.2 6.5 5.7 15.8 65 64 A E S S+ 0 0 129 -2,-0.2 -1,-0.1 -26,-0.1 -26,-0.1 0.757 74.8 71.3 -71.9 -23.0 3.5 7.9 14.9 66 65 A G S S- 0 0 12 1,-0.2 -26,-2.3 -26,-0.1 -25,-0.4 -0.151 88.2 -88.0 -88.0 179.7 4.4 10.6 17.3 67 66 A T > - 0 0 50 -28,-0.2 4,-2.8 -27,-0.2 -1,-0.2 -0.349 37.5-103.4 -79.7 168.3 7.1 13.2 17.4 68 67 A N H > S+ 0 0 32 2,-0.2 13,-2.1 1,-0.2 4,-2.1 0.776 125.2 58.2 -55.5 -31.6 10.6 13.0 18.8 69 68 A V H > S+ 0 0 83 11,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.968 108.8 42.3 -62.9 -51.2 9.2 15.1 21.6 70 69 A E H > S+ 0 0 109 1,-0.2 4,-2.5 2,-0.2 -2,-0.2 0.870 111.9 55.0 -66.5 -37.9 6.6 12.4 22.4 71 70 A L H X S+ 0 0 0 -4,-2.8 4,-1.5 2,-0.2 -1,-0.2 0.903 107.0 50.9 -63.6 -44.3 9.1 9.6 21.9 72 71 A G H <>S+ 0 0 0 -4,-2.1 5,-2.6 9,-0.2 4,-0.3 0.917 109.8 49.6 -56.3 -45.1 11.4 11.2 24.5 73 72 A T H ><5S+ 0 0 105 -4,-2.0 3,-1.7 1,-0.2 -2,-0.2 0.938 106.6 57.0 -61.1 -42.4 8.5 11.5 27.0 74 73 A A H 3<5S+ 0 0 14 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.837 111.0 42.8 -54.8 -36.7 7.7 7.8 26.3 75 74 A V T 3<5S- 0 0 7 -4,-1.5 -1,-0.3 -3,-0.2 -2,-0.2 0.293 118.8-108.6 -98.6 11.1 11.3 6.7 27.4 76 75 A G T < 5S+ 0 0 68 -3,-1.7 -3,-0.2 -4,-0.3 -2,-0.1 0.793 72.2 136.6 70.3 28.8 11.4 9.1 30.4 77 76 A K < - 0 0 84 -5,-2.6 -1,-0.2 2,-0.2 -2,-0.1 -0.832 56.0-138.7-105.8 149.0 13.9 11.6 29.0 78 77 A P S S+ 0 0 124 0, 0.0 2,-0.3 0, 0.0 -5,-0.1 0.222 84.9 57.0 -84.0 13.4 13.6 15.4 29.2 79 78 A H S S- 0 0 96 -7,-0.1 -2,-0.2 -11,-0.1 2,-0.0 -0.850 98.0 -77.4-140.7 165.5 14.8 15.8 25.6 80 79 A T - 0 0 78 -2,-0.3 2,-0.4 -8,-0.1 -11,-0.2 -0.350 37.4-155.9 -65.0 150.4 13.7 14.7 22.2 81 80 A V - 0 0 6 -13,-2.1 -9,-0.2 1,-0.1 -10,-0.2 -0.991 9.9-171.5-130.2 124.8 14.6 11.2 21.1 82 81 A S S S+ 0 0 24 -2,-0.4 -43,-2.7 1,-0.3 2,-0.3 0.753 71.4 1.9 -80.5 -34.7 14.8 10.4 17.4 83 82 A V E - B 0 38A 0 -45,-0.2 -63,-2.6 -15,-0.1 2,-0.4 -0.983 55.2-149.0-159.6 144.1 15.1 6.7 17.7 84 83 A V E -AB 19 37A 1 -47,-2.1 -47,-2.5 -2,-0.3 2,-0.6 -0.977 14.2-156.1-117.3 131.6 15.1 3.8 20.2 85 84 A S E -AB 18 36A 0 -67,-3.0 -67,-2.0 -2,-0.4 2,-0.7 -0.955 10.3-143.7-110.9 119.1 17.2 0.7 19.5 86 85 A I E +AB 17 35A 0 -51,-2.8 -52,-3.4 -2,-0.6 -51,-0.6 -0.736 24.8 170.4 -84.8 115.0 16.0 -2.4 21.3 87 86 A L E S+ 0 0 53 -71,-2.3 2,-0.3 -2,-0.7 -70,-0.2 0.757 76.8 7.9 -92.6 -34.1 19.0 -4.5 22.4 88 87 A D E -A 16 0A 75 -72,-2.3 -72,-2.5 1,-0.0 -1,-0.4 -0.947 62.8-147.4-149.0 129.5 17.1 -6.9 24.5 89 88 A A > - 0 0 15 -2,-0.3 3,-2.0 -74,-0.2 5,-0.3 0.662 30.8-171.8 -72.4 -17.0 13.2 -7.1 24.8 90 89 A G T 3 - 0 0 22 1,-0.3 -1,-0.2 -76,-0.2 -75,-0.2 -0.308 66.1 -27.5 58.7-138.8 13.4 -8.2 28.5 91 90 A E T 3 S+ 0 0 162 -81,-0.3 -1,-0.3 -80,-0.0 2,-0.1 0.179 115.4 109.6 -92.7 19.7 9.9 -9.1 29.7 92 91 A S < - 0 0 16 -3,-2.0 3,-0.2 -82,-0.1 -85,-0.1 -0.404 69.9-137.2 -90.9 168.2 8.2 -6.8 27.2 93 92 A R > + 0 0 146 1,-0.1 3,-1.8 -2,-0.1 4,-0.3 0.012 65.9 123.6-104.5 20.8 6.2 -7.4 24.0 94 93 A I G > + 0 0 1 -5,-0.3 3,-1.8 1,-0.3 4,-0.2 0.813 60.1 67.3 -55.5 -31.8 8.1 -4.6 22.2 95 94 A L G > S+ 0 0 82 1,-0.3 3,-2.1 -3,-0.2 -1,-0.3 0.731 81.3 76.2 -68.9 -17.6 9.2 -7.0 19.4 96 95 A A G X S+ 0 0 67 -3,-1.8 3,-1.4 1,-0.3 -1,-0.3 0.798 82.0 70.6 -57.8 -28.6 5.6 -7.3 18.2 97 96 A L G < S+ 0 0 20 -3,-1.8 -1,-0.3 -4,-0.3 -2,-0.2 0.666 76.6 82.2 -60.0 -16.3 6.1 -3.8 16.8 98 97 A G G < S- 0 0 19 -3,-2.1 -37,-0.3 -4,-0.2 -1,-0.2 0.714 81.0-167.6 -67.8 -22.6 8.4 -5.4 14.1 99 98 A G < + 0 0 61 -3,-1.4 -1,-0.2 -4,-0.2 -37,-0.0 -0.155 41.2 1.6 71.8-157.6 5.4 -6.3 12.0 100 99 A K 0 0 204 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.218 360.0 360.0 -69.1 149.4 5.5 -8.7 9.1 101 100 A E 0 0 267 -41,-0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.210 360.0 360.0 -62.1 360.0 8.7 -10.4 8.1