==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER AMYLOID PEPTIDE 18-APR-05 2BP4 . COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.ZIRAH,S.A.KOZIN,A.K.MAZUR,A.BLOND,M.CHEMINANT, . 16 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1852.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 11 68.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 68.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D > 0 0 136 0, 0.0 4,-2.1 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 -60.6 -1.0 5.9 -10.0 2 2 A A H > + 0 0 50 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.872 360.0 57.3 -61.0 -39.6 -3.9 4.3 -8.3 3 3 A E H > S+ 0 0 171 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.905 108.3 45.9 -58.0 -45.4 -2.3 0.9 -8.3 4 4 A F H > S+ 0 0 145 -3,-0.2 4,-3.0 2,-0.2 5,-0.2 0.897 112.3 50.3 -66.1 -42.7 0.8 2.2 -6.5 5 5 A R H X S+ 0 0 151 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.886 113.8 45.7 -62.1 -40.7 -1.4 4.1 -3.9 6 6 A H H X S+ 0 0 137 -4,-2.6 4,-2.7 2,-0.2 -2,-0.2 0.910 114.1 47.9 -69.7 -43.9 -3.4 0.9 -3.3 7 7 A D H X S+ 0 0 99 -4,-2.6 4,-2.9 -5,-0.2 -2,-0.2 0.941 114.1 45.9 -62.0 -49.8 -0.4 -1.3 -3.1 8 8 A S H X S+ 0 0 47 -4,-3.0 4,-2.6 1,-0.2 5,-0.3 0.856 112.2 53.5 -62.6 -36.6 1.4 1.0 -0.7 9 9 A G H X S+ 0 0 40 -4,-1.9 4,-2.1 -5,-0.2 -2,-0.2 0.945 112.2 42.5 -61.5 -51.2 -1.7 1.4 1.3 10 10 A Y H X S+ 0 0 130 -4,-2.7 4,-1.3 2,-0.2 -2,-0.2 0.913 116.1 49.2 -62.2 -45.6 -2.1 -2.4 1.7 11 11 A E H X S+ 0 0 76 -4,-2.9 4,-2.5 1,-0.2 3,-0.5 0.938 116.0 40.4 -59.8 -51.1 1.5 -2.9 2.4 12 12 A V H < S+ 0 0 90 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.796 108.1 62.5 -74.0 -29.5 1.9 -0.2 5.0 13 13 A H H < S+ 0 0 139 -4,-2.1 -1,-0.3 -5,-0.3 -2,-0.2 0.844 114.2 35.7 -60.2 -34.7 -1.5 -1.1 6.5 14 14 A H H < S+ 0 0 95 -4,-1.3 2,-0.4 -3,-0.5 -2,-0.2 0.969 116.5 47.4 -82.5 -65.4 -0.0 -4.5 7.3 15 15 A Q < 0 0 116 -4,-2.5 -1,-0.2 1,-0.2 0, 0.0 -0.687 360.0 360.0 -92.5 129.6 3.6 -3.9 8.2 16 16 A K 0 0 230 -2,-0.4 -1,-0.2 -3,-0.1 -4,-0.1 0.354 360.0 360.0-165.7 360.0 4.3 -1.1 10.7