==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 21-APR-05 2BPN . COMPND 2 MOLECULE: CYTOCHROME C3; . SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; . AUTHOR A.C.MESSIAS,A.P.AGUIAR,L.BRENNAN,A.V.XAVIER,D.L.TURNER . 107 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8827.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 41.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 4.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 8.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 150 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 58.6 -1.5 -14.6 -2.5 2 2 A P - 0 0 89 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.081 360.0 -94.9 -82.8-162.7 -4.4 -13.7 -4.8 3 3 A K - 0 0 187 3,-0.0 3,-0.1 -2,-0.0 0, 0.0 -0.976 40.7-101.2-129.1 117.5 -4.2 -12.2 -8.3 4 4 A A - 0 0 87 -2,-0.5 3,-0.1 1,-0.0 22,-0.0 -0.049 50.5-130.1 -37.4 99.1 -4.5 -8.5 -8.9 5 5 A P - 0 0 87 0, 0.0 2,-0.2 0, 0.0 17,-0.1 0.049 29.9 -84.3 -49.2 165.7 -8.1 -8.5 -10.1 6 6 A A - 0 0 93 1,-0.1 -3,-0.0 2,-0.1 16,-0.0 -0.546 54.1 -92.1 -80.3 144.4 -9.0 -6.7 -13.3 7 7 A D S S+ 0 0 93 -2,-0.2 -1,-0.1 1,-0.2 14,-0.1 0.109 88.2 95.6 -44.9 167.8 -9.7 -3.0 -13.1 8 8 A G + 0 0 62 1,-0.3 2,-0.5 12,-0.1 -1,-0.2 0.566 49.6 134.3 115.2 20.8 -13.2 -1.9 -12.6 9 9 A L + 0 0 57 11,-0.4 11,-2.4 -4,-0.1 2,-0.4 -0.897 25.2 172.3-105.6 126.6 -13.2 -1.4 -8.8 10 10 A K E -A 19 0A 109 -2,-0.5 2,-0.6 9,-0.2 9,-0.3 -0.991 23.7-141.4-135.3 141.8 -14.7 1.7 -7.4 11 11 A M E +A 18 0A 64 7,-3.2 7,-4.3 -2,-0.4 3,-0.0 -0.913 36.0 146.1-107.9 119.1 -15.3 2.8 -3.8 12 12 A E + 0 0 120 -2,-0.6 -1,-0.1 5,-0.3 7,-0.0 -0.348 22.0 127.1-147.4 57.7 -18.5 4.6 -3.0 13 13 A A S S+ 0 0 80 3,-0.3 -1,-0.1 2,-0.0 -2,-0.0 0.829 75.3 42.2 -82.6 -36.2 -19.7 3.6 0.4 14 14 A T S S- 0 0 57 2,-0.4 41,-0.0 -3,-0.0 0, 0.0 0.062 115.6 -74.0 -91.1-156.7 -20.0 7.2 1.6 15 15 A K S S+ 0 0 184 1,-0.1 -3,-0.0 2,-0.0 -2,-0.0 0.052 117.7 68.8 -91.3 24.1 -21.3 10.3 -0.0 16 16 A Q S S- 0 0 99 2,-0.0 -2,-0.4 90,-0.0 2,-0.3 -0.829 70.1-156.3-149.6 104.2 -18.2 10.3 -2.2 17 17 A P - 0 0 84 0, 0.0 2,-0.4 0, 0.0 -5,-0.3 -0.648 13.1-175.7 -80.7 132.0 -17.5 7.7 -4.8 18 18 A V E -A 11 0A 31 -7,-4.3 -7,-3.2 -2,-0.3 2,-0.2 -0.965 12.4-149.4-136.7 117.0 -13.9 7.2 -5.8 19 19 A V E -A 10 0A 86 -2,-0.4 2,-0.3 85,-0.3 -9,-0.2 -0.533 15.0-176.3 -83.2 150.1 -12.7 4.9 -8.5 20 20 A F - 0 0 39 -11,-2.4 2,-0.5 -2,-0.2 -11,-0.4 -0.890 11.1-160.4-153.1 116.8 -9.3 3.1 -8.3 21 21 A N > - 0 0 52 -2,-0.3 3,-1.4 1,-0.1 4,-0.4 -0.872 17.9-143.3-102.5 126.2 -7.7 0.9 -10.9 22 22 A H G > S+ 0 0 39 -2,-0.5 3,-1.3 1,-0.3 5,-0.1 0.769 100.8 69.0 -54.1 -28.3 -4.9 -1.4 -9.7 23 23 A S G > S+ 0 0 45 1,-0.3 3,-1.0 2,-0.2 -1,-0.3 0.897 98.8 46.8 -58.4 -42.9 -3.3 -0.7 -13.0 24 24 A T G < S+ 0 0 78 -3,-1.4 -1,-0.3 1,-0.3 -2,-0.2 0.483 124.9 35.5 -77.2 -2.9 -2.7 2.9 -11.9 25 25 A H G < S+ 0 0 76 -3,-1.3 3,-0.3 -4,-0.4 -1,-0.3 -0.277 79.8 110.7-144.3 48.3 -1.4 1.4 -8.7 26 26 A K S < S+ 0 0 164 -3,-1.0 -3,-0.1 1,-0.2 -2,-0.1 0.290 70.8 66.7-105.1 5.2 0.4 -1.8 -9.8 27 27 A S S S+ 0 0 120 -5,-0.1 2,-0.4 2,-0.1 -1,-0.2 -0.099 87.3 84.3-115.3 31.4 3.8 -0.4 -9.0 28 28 A V S S- 0 0 69 -3,-0.3 5,-0.1 0, 0.0 -3,-0.0 -0.997 89.7 -96.2-137.2 140.0 3.2 -0.3 -5.2 29 29 A K >> - 0 0 174 -2,-0.4 3,-3.4 1,-0.2 4,-0.6 -0.302 27.5-134.8 -54.8 127.6 3.6 -3.0 -2.6 30 30 A C H >> S+ 0 0 73 1,-0.3 4,-3.4 2,-0.2 3,-0.7 0.769 108.1 67.4 -55.4 -25.1 0.2 -4.5 -1.9 31 31 A G H 34 S+ 0 0 37 1,-0.2 -1,-0.3 2,-0.2 -2,-0.1 0.482 88.0 68.2 -74.0 -2.5 1.2 -4.1 1.7 32 32 A D H <4 S+ 0 0 43 -3,-3.4 -1,-0.2 3,-0.1 45,-0.2 0.839 120.3 14.2 -83.3 -37.5 1.0 -0.4 1.1 33 33 A C H << S+ 0 0 72 -3,-0.7 2,-1.2 -4,-0.6 -2,-0.2 0.786 129.3 54.5-102.1 -44.2 -2.8 -0.5 0.7 34 34 A H S < S- 0 0 43 -4,-3.4 -1,-0.2 -5,-0.2 -2,-0.1 -0.676 81.3-172.0 -95.1 78.4 -3.5 -3.9 2.1 35 35 A H - 0 0 37 -2,-1.2 7,-1.5 -3,-0.2 2,-0.4 -0.290 32.1 -96.1 -70.3 155.0 -1.8 -3.6 5.5 36 36 A P B -B 41 0B 76 0, 0.0 2,-0.3 0, 0.0 5,-0.2 -0.634 44.8-167.7 -75.7 121.4 -1.4 -6.6 7.8 37 37 A V - 0 0 35 3,-1.1 3,-0.4 -2,-0.4 -3,-0.0 -0.864 66.6 -5.9-114.9 148.8 -4.2 -6.8 10.3 38 38 A N S S- 0 0 154 -2,-0.3 -1,-0.2 1,-0.3 3,-0.1 0.777 132.6 -59.1 40.1 30.3 -4.4 -8.9 13.4 39 39 A G S S+ 0 0 74 -3,-0.2 -1,-0.3 1,-0.1 2,-0.1 0.982 122.0 94.8 64.8 60.5 -1.2 -10.4 12.0 40 40 A K S S- 0 0 123 -3,-0.4 -3,-1.1 -5,-0.0 -1,-0.1 -0.496 85.0-102.5 178.9 103.9 -2.6 -11.5 8.7 41 41 A E B -B 36 0B 129 -5,-0.2 2,-0.4 -2,-0.1 -6,-0.1 0.018 41.0-149.7 -33.4 124.2 -2.6 -9.6 5.4 42 42 A D + 0 0 26 -7,-1.5 -1,-0.1 1,-0.1 -4,-0.0 -0.890 29.8 167.2-109.4 134.1 -6.1 -8.2 5.0 43 43 A Y + 0 0 84 -2,-0.4 2,-0.1 -9,-0.1 3,-0.1 0.056 45.0 110.9-129.8 22.7 -7.6 -7.6 1.6 44 44 A R S S- 0 0 152 1,-0.2 -2,-0.1 2,-0.1 0, 0.0 -0.438 83.6 -49.0 -95.1 171.5 -11.2 -7.0 2.6 45 45 A K - 0 0 161 -2,-0.1 -1,-0.2 1,-0.1 6,-0.1 -0.007 49.6-132.3 -37.6 136.9 -13.3 -3.9 2.5 46 46 A C S S+ 0 0 58 -3,-0.1 6,-0.9 5,-0.1 -1,-0.1 0.925 103.1 31.6 -61.5 -46.0 -11.3 -1.0 4.1 47 47 A G S > S+ 0 0 4 4,-0.1 4,-0.6 6,-0.1 5,-0.2 0.970 83.0 137.4 -73.7 -84.6 -14.3 -0.1 6.1 48 48 A T T >4 - 0 0 59 3,-0.1 2,-0.6 2,-0.1 3,-0.5 0.291 69.5 -62.4 53.7 168.0 -16.3 -3.2 6.9 49 49 A A T 34 S+ 0 0 102 1,-0.2 3,-0.1 4,-0.0 -1,-0.1 -0.774 124.2 25.7 -89.8 120.9 -17.8 -3.9 10.3 50 50 A G T 34 S+ 0 0 78 -2,-0.6 -1,-0.2 1,-0.4 -2,-0.1 0.017 119.4 55.4 117.8 -24.1 -15.2 -4.2 13.0 51 51 A C S << S- 0 0 56 -4,-0.6 2,-1.7 -3,-0.5 -1,-0.4 0.157 114.7 -4.8-107.9-135.4 -12.5 -2.1 11.3 52 52 A H S S+ 0 0 28 -6,-0.9 -1,-0.1 -5,-0.2 12,-0.1 -0.455 74.0 142.1 -64.9 86.1 -12.7 1.5 9.9 53 53 A D + 0 0 103 -2,-1.7 2,-0.3 -3,-0.1 -1,-0.2 0.588 33.2 110.8-101.6 -18.0 -16.4 2.1 10.6 54 54 A S B +c 64 0C 13 9,-1.0 11,-2.6 -3,-0.2 12,-0.4 -0.440 35.0 165.3 -62.8 120.6 -15.9 5.7 11.6 55 55 A M + 0 0 112 -2,-0.3 2,-0.3 10,-0.2 -1,-0.1 -0.447 30.4 112.6-137.8 61.4 -17.5 7.9 8.9 56 56 A D - 0 0 108 3,-0.3 2,-0.8 4,-0.1 10,-0.2 -0.771 69.4-111.8-126.9 171.6 -17.8 11.3 10.4 57 57 A K S S+ 0 0 162 -2,-0.3 3,-0.1 1,-0.0 2,-0.1 -0.724 101.7 16.4-108.0 79.7 -16.3 14.7 9.8 58 58 A K S S+ 0 0 170 -2,-0.8 6,-0.0 1,-0.6 -1,-0.0 -0.474 89.6 95.8 163.2 -80.4 -14.3 15.3 12.9 59 59 A D - 0 0 94 1,-0.1 -1,-0.6 -2,-0.1 -3,-0.3 -0.104 53.7-175.5 -41.9 128.6 -13.6 12.3 15.0 60 60 A K + 0 0 140 -3,-0.1 4,-0.3 4,-0.1 3,-0.1 0.200 26.0 113.3-103.1-137.1 -10.1 11.0 14.1 61 61 A S S > S- 0 0 65 2,-0.2 3,-1.0 1,-0.2 6,-0.1 -0.052 85.5 -70.9 86.5 168.0 -8.3 7.9 15.2 62 62 A A T 3 S+ 0 0 59 1,-0.3 -1,-0.2 6,-0.0 5,-0.1 0.813 131.9 65.3 -64.7 -30.7 -7.3 4.8 13.2 63 63 A K T 3 S+ 0 0 120 -3,-0.1 -9,-1.0 -11,-0.1 -1,-0.3 0.804 76.0 111.1 -60.9 -29.6 -11.0 3.9 13.2 64 64 A G B <> -c 54 0C 2 -3,-1.0 4,-0.6 -4,-0.3 3,-0.2 -0.260 56.3-162.1 -52.0 114.6 -11.5 7.0 11.1 65 65 A Y T >4 S+ 0 0 23 -11,-2.6 3,-1.0 1,-0.2 -1,-0.2 0.942 94.3 40.6 -65.6 -48.9 -12.5 5.7 7.7 66 66 A Y T 34 S+ 0 0 142 -12,-0.4 5,-0.5 1,-0.2 3,-0.2 0.473 110.7 62.3 -78.6 -1.7 -11.6 9.0 6.0 67 67 A H T 34 S+ 0 0 31 -3,-0.2 3,-0.3 -13,-0.2 -1,-0.2 0.535 99.0 53.3 -97.2 -11.6 -8.6 9.2 8.2 68 68 A V S << S+ 0 0 36 -3,-1.0 -1,-0.2 -4,-0.6 -2,-0.2 0.138 116.1 39.3-106.2 15.7 -7.1 6.0 6.7 69 69 A M S S+ 0 0 25 -3,-0.2 -1,-0.2 9,-0.1 -2,-0.1 0.019 127.8 22.6-152.5 29.3 -7.4 7.4 3.2 70 70 A H S S+ 0 0 33 1,-0.4 11,-0.2 -3,-0.3 8,-0.2 0.150 93.5 83.8-155.3 -73.3 -6.4 11.1 3.6 71 71 A D - 0 0 67 -5,-0.5 -1,-0.4 1,-0.1 10,-0.3 -0.031 51.9-161.9 -44.8 149.8 -4.3 11.9 6.7 72 72 A K S S+ 0 0 146 1,-0.1 2,-0.9 9,-0.1 -1,-0.1 0.506 77.3 81.0-112.4 -14.5 -0.6 11.4 6.2 73 73 A N S S+ 0 0 133 4,-0.0 2,-0.3 2,-0.0 -1,-0.1 -0.256 75.4 112.6 -87.6 46.5 0.3 11.3 9.8 74 74 A T S S- 0 0 34 -2,-0.9 4,-0.1 2,-0.2 -6,-0.0 -0.741 82.3-112.2-116.6 165.2 -0.8 7.7 10.1 75 75 A K S S+ 0 0 186 -2,-0.3 2,-0.3 2,-0.1 -1,-0.1 0.884 105.7 39.2 -61.1 -40.1 0.9 4.4 10.7 76 76 A F S S- 0 0 92 1,-0.1 -2,-0.2 -43,-0.0 -44,-0.1 -0.775 97.6 -96.7-112.3 157.2 0.2 3.4 7.1 77 77 A K - 0 0 142 -2,-0.3 2,-0.1 -45,-0.2 -1,-0.1 -0.247 38.8-159.0 -66.7 157.9 0.1 5.4 3.9 78 78 A S - 0 0 10 -8,-0.2 4,-0.3 -9,-0.1 -9,-0.1 -0.137 31.0 -96.9-115.5-149.0 -3.1 6.8 2.6 79 79 A C S > S+ 0 0 56 -8,-0.1 4,-1.0 2,-0.1 -9,-0.2 0.744 121.5 38.1-105.7 -40.1 -4.4 8.0 -0.7 80 80 A V H > S+ 0 0 39 2,-0.2 4,-2.1 3,-0.1 5,-0.1 0.795 112.9 61.1 -80.6 -31.4 -3.8 11.7 -0.3 81 81 A G H >> S+ 0 0 11 -10,-0.3 4,-2.7 2,-0.2 3,-1.3 0.991 106.5 40.1 -57.0 -71.2 -0.5 11.1 1.5 82 82 A C H 34 S+ 0 0 51 -4,-0.3 4,-0.4 1,-0.3 -1,-0.2 0.891 117.3 53.0 -44.2 -46.4 1.3 9.3 -1.2 83 83 A H H 3X S+ 0 0 39 -4,-1.0 4,-4.7 1,-0.2 3,-0.4 0.836 108.5 50.1 -58.7 -35.9 -0.2 11.8 -3.6 84 84 A V H << S+ 0 0 63 -4,-2.1 -2,-0.2 -3,-1.3 -1,-0.2 0.899 109.0 49.7 -70.0 -42.3 1.1 14.6 -1.3 85 85 A E T < S+ 0 0 168 -4,-2.7 -1,-0.2 1,-0.1 -2,-0.2 0.491 124.2 34.3 -74.1 -2.9 4.6 13.0 -1.4 86 86 A V T 4 S+ 0 0 93 -3,-0.4 2,-2.5 -4,-0.4 3,-0.3 0.743 112.1 53.8-113.0 -58.8 4.2 12.9 -5.1 87 87 A A S < S+ 0 0 13 -4,-4.7 11,-0.1 1,-0.2 -2,-0.1 -0.317 83.0 99.9 -78.0 56.0 2.2 16.0 -6.1 88 88 A G + 0 0 69 -2,-2.5 -1,-0.2 -3,-0.1 3,-0.1 0.010 64.9 66.9-129.1 25.0 4.6 18.2 -4.3 89 89 A A S S+ 0 0 103 -3,-0.3 2,-0.3 1,-0.3 -2,-0.1 0.636 103.6 35.8-114.1 -30.3 6.7 19.3 -7.3 90 90 A D - 0 0 106 1,-0.0 4,-0.5 0, 0.0 -1,-0.3 -0.929 64.9-141.3-127.6 151.3 4.1 21.4 -9.0 91 91 A A S S+ 0 0 86 -2,-0.3 -4,-0.0 2,-0.1 -3,-0.0 -0.047 96.9 61.9 -98.4 29.2 1.3 23.6 -7.8 92 92 A A S > S+ 0 0 53 2,-0.1 3,-2.1 3,-0.0 -1,-0.1 0.725 101.9 39.9-114.7 -61.7 -1.0 22.5 -10.5 93 93 A K G >>>S+ 0 0 108 1,-0.3 3,-3.7 2,-0.2 4,-3.3 0.751 99.4 79.9 -62.6 -23.8 -1.5 18.7 -10.2 94 94 A K G 345S+ 0 0 91 -4,-0.5 4,-0.3 1,-0.3 -1,-0.3 0.689 91.1 53.5 -56.5 -17.1 -1.7 19.4 -6.4 95 95 A K G <45S+ 0 0 125 -3,-2.1 -1,-0.3 3,-0.2 -2,-0.2 0.141 116.4 37.5-102.8 16.0 -5.2 20.4 -7.3 96 96 A D T <45S+ 0 0 47 -3,-3.7 8,-1.5 7,-0.1 9,-0.5 0.569 122.5 36.2-130.0 -43.6 -5.8 17.1 -9.0 97 97 A L T <5S+ 0 0 29 -4,-3.3 -3,-0.2 6,-0.2 8,-0.1 0.906 141.4 16.1 -80.3 -46.5 -4.0 14.6 -6.9 98 98 A T S S+ 0 0 136 -8,-1.5 3,-0.7 2,-0.2 -85,-0.3 0.892 119.8 42.0 -60.7 -41.3 -9.5 12.5 -9.9 105 105 A C T 3 S+ 0 0 32 -9,-0.5 2,-0.8 1,-0.3 -86,-0.3 0.984 129.3 28.0 -67.8 -60.2 -10.7 11.1 -6.7 106 106 A H T 3 0 0 63 -7,-0.3 -4,-1.3 -10,-0.2 -3,-0.8 -0.542 360.0 360.0-101.6 62.7 -13.4 13.7 -6.1 107 107 A E < 0 0 161 -2,-0.8 -5,-0.3 -3,-0.7 -1,-0.1 0.869 360.0 360.0 -95.7 360.0 -14.1 14.5 -9.7