==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MOTOR PROTEIN 21-DEC-07 3BRI . COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 1, CYTOPLASMIC; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR G.BENISON,P.A.KARPLUS,E.BARBAR,M.CHIODO . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5605.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 27.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A D 0 0 218 0, 0.0 2,-0.1 0, 0.0 76,-0.0 0.000 360.0 360.0 360.0 162.4 -4.3 10.8 2.8 2 4 A R - 0 0 135 1,-0.1 2,-0.5 74,-0.1 22,-0.0 -0.387 360.0-127.7 -97.9 146.8 -5.0 12.3 -0.6 3 5 A K - 0 0 161 -2,-0.1 74,-2.5 2,-0.0 2,-0.5 -0.743 23.6-140.9 -87.4 125.9 -4.1 15.6 -2.2 4 6 A A E +A 76 0A 49 -2,-0.5 2,-0.4 72,-0.2 72,-0.2 -0.759 21.2 179.0 -87.9 127.7 -7.1 17.6 -3.6 5 7 A V E -A 75 0A 53 70,-2.5 70,-2.9 -2,-0.5 2,-0.6 -0.960 16.4-151.6-130.2 113.1 -6.5 19.4 -7.0 6 8 A I E +A 74 0A 72 -2,-0.4 68,-0.2 68,-0.2 3,-0.1 -0.755 15.8 177.9 -88.2 121.9 -9.4 21.3 -8.5 7 9 A K E - 0 0 126 66,-2.2 2,-0.3 -2,-0.6 67,-0.2 0.879 68.4 -2.3 -90.7 -47.3 -9.1 21.4 -12.3 8 10 A N E +A 73 0A 96 65,-1.9 65,-2.8 2,-0.0 -1,-0.4 -0.989 68.9 173.6-147.3 137.6 -12.2 23.3 -13.2 9 11 A A E +A 72 0A 37 -2,-0.3 2,-0.3 63,-0.2 63,-0.2 -0.995 26.1 176.7-148.8 140.7 -15.0 24.6 -11.1 10 12 A D E +A 71 0A 51 61,-2.8 61,-1.8 -2,-0.3 2,-0.3 -0.791 61.3 99.1-134.2 86.9 -18.1 26.7 -11.5 11 13 A M S S- 0 0 5 -2,-0.3 59,-0.1 59,-0.2 58,-0.1 -0.953 78.8 -85.9-172.7 143.4 -19.3 26.4 -7.9 12 14 A S > - 0 0 30 57,-0.5 4,-2.3 -2,-0.3 5,-0.2 -0.216 41.2-116.4 -58.6 152.3 -19.3 28.3 -4.5 13 15 A E H > S+ 0 0 146 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.892 115.7 52.1 -59.5 -38.4 -16.2 27.8 -2.3 14 16 A E H > S+ 0 0 143 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.909 110.1 48.0 -66.2 -40.8 -18.2 26.2 0.4 15 17 A M H > S+ 0 0 19 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.870 107.9 54.8 -68.9 -36.0 -19.8 23.7 -2.1 16 18 A Q H X S+ 0 0 17 -4,-2.3 4,-2.2 2,-0.2 -1,-0.2 0.921 108.3 50.0 -61.3 -41.7 -16.4 22.8 -3.5 17 19 A Q H X S+ 0 0 105 -4,-2.0 4,-2.6 1,-0.2 -2,-0.2 0.899 109.8 50.0 -64.0 -40.4 -15.2 22.0 0.0 18 20 A D H X S+ 0 0 42 -4,-2.0 4,-2.9 2,-0.2 -1,-0.2 0.862 108.4 53.7 -63.9 -37.7 -18.3 19.8 0.5 19 21 A A H X S+ 0 0 0 -4,-2.3 4,-2.4 2,-0.2 -2,-0.2 0.936 110.9 45.4 -61.9 -46.9 -17.6 18.0 -2.8 20 22 A V H X S+ 0 0 17 -4,-2.2 4,-2.3 2,-0.2 -2,-0.2 0.927 114.9 48.6 -62.5 -43.3 -14.0 17.3 -1.6 21 23 A D H X S+ 0 0 77 -4,-2.6 4,-2.4 2,-0.2 -2,-0.2 0.917 111.8 48.7 -60.5 -45.5 -15.3 16.1 1.8 22 24 A C H X S+ 0 0 3 -4,-2.9 4,-2.4 2,-0.2 -2,-0.2 0.908 112.6 47.5 -60.4 -46.0 -18.0 13.9 0.2 23 25 A A H X S+ 0 0 0 -4,-2.4 4,-2.6 2,-0.2 -1,-0.2 0.870 109.9 53.5 -66.0 -37.9 -15.5 12.3 -2.2 24 26 A T H X S+ 0 0 51 -4,-2.3 4,-1.6 -5,-0.2 -2,-0.2 0.942 111.1 46.0 -60.4 -46.5 -13.0 11.8 0.7 25 27 A Q H X S+ 0 0 91 -4,-2.4 4,-1.7 2,-0.2 -2,-0.2 0.894 111.7 52.7 -59.7 -44.3 -15.8 10.0 2.7 26 28 A A H X S+ 0 0 0 -4,-2.4 4,-2.8 1,-0.2 -2,-0.2 0.916 108.8 48.5 -60.5 -46.5 -16.7 7.9 -0.4 27 29 A L H < S+ 0 0 16 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.795 108.9 54.1 -66.9 -29.4 -13.1 6.8 -1.0 28 30 A E H < S+ 0 0 159 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.877 118.2 35.8 -65.6 -36.8 -12.8 5.8 2.7 29 31 A K H < S+ 0 0 135 -4,-1.7 2,-0.3 -5,-0.1 -2,-0.2 0.860 120.2 36.6 -84.7 -39.4 -16.0 3.6 2.4 30 32 A Y < - 0 0 75 -4,-2.8 -1,-0.1 -5,-0.2 3,-0.0 -0.872 42.3-171.5-128.2 151.0 -15.7 2.2 -1.1 31 33 A N + 0 0 144 -2,-0.3 2,-0.4 -3,-0.1 -1,-0.1 0.583 66.9 85.2-110.7 -19.9 -13.1 0.9 -3.6 32 34 A I S >> S- 0 0 89 1,-0.1 4,-2.2 2,-0.0 3,-0.9 -0.769 75.3-132.6 -94.4 132.6 -15.2 0.4 -6.8 33 35 A E H 3> S+ 0 0 94 -2,-0.4 4,-2.7 1,-0.3 5,-0.2 0.857 103.5 50.2 -52.5 -47.5 -15.6 3.5 -9.1 34 36 A K H 3> S+ 0 0 163 1,-0.2 4,-2.0 2,-0.2 -1,-0.3 0.841 111.6 49.6 -65.2 -30.5 -19.4 3.2 -9.6 35 37 A D H <> S+ 0 0 63 -3,-0.9 4,-2.0 2,-0.2 -1,-0.2 0.875 110.9 49.3 -72.2 -39.8 -20.0 2.8 -5.8 36 38 A I H X S+ 0 0 7 -4,-2.2 4,-2.1 2,-0.2 5,-0.2 0.951 112.4 48.7 -60.5 -48.9 -17.8 5.9 -5.1 37 39 A A H X S+ 0 0 12 -4,-2.7 4,-2.6 1,-0.2 -2,-0.2 0.902 109.8 51.8 -60.2 -42.4 -19.7 7.9 -7.7 38 40 A A H X S+ 0 0 34 -4,-2.0 4,-2.7 1,-0.2 -1,-0.2 0.901 107.9 51.6 -64.5 -39.0 -23.1 6.8 -6.3 39 41 A Y H X S+ 0 0 42 -4,-2.0 4,-2.3 2,-0.2 -1,-0.2 0.931 113.3 44.0 -61.6 -47.8 -22.2 7.9 -2.8 40 42 A I H X S+ 0 0 0 -4,-2.1 4,-2.5 2,-0.2 5,-0.2 0.935 114.1 49.7 -64.2 -46.3 -21.2 11.3 -3.9 41 43 A K H X S+ 0 0 55 -4,-2.6 4,-2.4 1,-0.2 11,-0.3 0.938 113.0 46.6 -58.8 -49.3 -24.2 11.8 -6.2 42 44 A K H X S+ 0 0 136 -4,-2.7 4,-1.7 1,-0.2 -1,-0.2 0.889 111.5 50.8 -62.0 -40.9 -26.6 10.7 -3.4 43 45 A E H X S+ 0 0 35 -4,-2.3 4,-2.7 -5,-0.2 5,-0.3 0.907 111.5 48.0 -64.4 -41.7 -25.0 12.9 -0.8 44 46 A F H X S+ 0 0 0 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.877 106.9 55.5 -69.9 -35.0 -25.2 16.0 -3.1 45 47 A D H X S+ 0 0 35 -4,-2.4 4,-0.7 -5,-0.2 -1,-0.2 0.907 114.3 43.1 -57.0 -40.3 -28.8 15.3 -4.0 46 48 A K H < S+ 0 0 162 -4,-1.7 -2,-0.2 -5,-0.2 -1,-0.2 0.924 124.1 32.1 -69.6 -47.5 -29.4 15.4 -0.2 47 49 A K H < S+ 0 0 111 -4,-2.7 -3,-0.2 1,-0.2 -2,-0.2 0.840 134.8 23.3 -83.1 -36.4 -27.3 18.4 0.7 48 50 A Y H < S- 0 0 51 -4,-2.7 -1,-0.2 -5,-0.3 -3,-0.2 0.065 111.4-104.4-127.1 21.8 -27.6 20.5 -2.5 49 51 A N < - 0 0 114 -4,-0.7 -3,-0.2 -3,-0.1 -1,-0.1 0.485 55.1 -33.8 71.6 149.2 -30.9 19.3 -4.0 50 52 A P S S+ 0 0 79 0, 0.0 35,-0.1 0, 0.0 -8,-0.0 -0.342 92.4 49.4 -64.8 158.2 -31.5 17.0 -7.0 51 53 A T + 0 0 81 33,-0.1 35,-0.6 1,-0.1 2,-0.2 0.309 56.7 150.2-125.6 118.5 -30.4 16.3 -9.6 52 54 A W E -B 85 0A 1 -11,-0.3 2,-0.3 33,-0.2 33,-0.2 -0.613 23.4-158.6 -97.1 161.4 -26.6 15.6 -9.6 53 55 A H E -B 84 0A 74 31,-2.0 31,-2.0 -2,-0.2 2,-0.4 -0.992 10.4-165.0-136.7 140.4 -24.5 13.2 -11.8 54 56 A C E -B 83 0A 18 -2,-0.3 2,-0.4 29,-0.2 29,-0.2 -0.995 10.9-171.9-138.9 133.4 -21.1 11.9 -10.8 55 57 A I E -B 82 0A 76 27,-2.3 27,-2.5 -2,-0.4 2,-0.4 -0.973 9.0-171.9-119.1 135.1 -18.3 10.2 -12.7 56 58 A V E +B 81 0A 16 -2,-0.4 25,-0.2 25,-0.2 2,-0.2 -0.997 32.7 97.1-130.2 130.2 -15.3 8.7 -10.9 57 59 A G E -B 80 0A 13 23,-2.6 23,-1.7 -2,-0.4 -2,-0.0 -0.666 65.1-100.4-168.9-129.8 -12.1 7.4 -12.6 58 60 A R S S+ 0 0 145 21,-0.3 -1,-0.1 -2,-0.2 23,-0.1 0.471 100.0 12.7-144.7 -59.2 -8.6 8.4 -13.4 59 61 A N S S+ 0 0 148 21,-0.1 20,-0.0 2,-0.1 19,-0.0 0.355 82.6 133.0-117.6 1.9 -8.1 9.5 -17.0 60 62 A F - 0 0 53 20,-0.1 2,-0.3 1,-0.1 -3,-0.1 -0.067 40.6-146.9 -56.9 158.6 -11.6 9.9 -18.5 61 63 A G - 0 0 70 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.863 17.9-169.4-119.7 160.3 -12.5 13.0 -20.6 62 64 A S - 0 0 63 -2,-0.3 2,-0.3 2,-0.1 0, 0.0 -0.984 25.8-165.5-148.7 158.2 -16.0 14.6 -20.7 63 65 A Y + 0 0 224 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.858 32.0 156.3-145.5 107.7 -18.2 17.1 -22.4 64 66 A V - 0 0 46 -2,-0.3 2,-0.7 22,-0.0 -2,-0.1 -0.867 42.9-123.7-130.7 159.2 -21.3 18.0 -20.5 65 67 A T - 0 0 96 -2,-0.3 22,-2.1 22,-0.1 2,-0.3 -0.934 39.6-167.8-107.0 109.6 -23.8 20.9 -20.3 66 68 A H E - C 0 86A 61 -2,-0.7 20,-0.3 20,-0.3 2,-0.2 -0.683 24.4-109.2-107.3 153.2 -23.9 22.1 -16.7 67 69 A E E > - 0 0 75 18,-2.6 3,-2.0 3,-0.4 18,-0.3 -0.558 53.3 -90.0 -69.8 137.4 -26.1 24.4 -14.7 68 70 A T E 3 S+ 0 0 106 1,-0.3 -1,-0.1 -2,-0.2 -57,-0.0 -0.217 111.9 9.2 -49.5 134.0 -24.4 27.7 -13.7 69 71 A R E 3 S+ 0 0 134 1,-0.1 -57,-0.5 -3,-0.1 -1,-0.3 0.587 109.1 92.9 69.9 15.2 -22.6 27.3 -10.4 70 72 A H E < + 0 0 37 -3,-2.0 15,-2.0 15,-0.2 -3,-0.4 -0.393 61.1 94.1-134.0 56.7 -23.2 23.6 -10.2 71 73 A F E +AC 10 84A 18 -61,-1.8 -61,-2.8 13,-0.2 2,-0.3 -0.979 35.5 164.0-150.2 133.0 -20.0 22.0 -11.7 72 74 A I E -AC 9 83A 0 11,-2.0 11,-2.6 -2,-0.3 2,-0.4 -0.975 12.0-174.7-148.8 140.9 -16.7 20.7 -10.4 73 75 A Y E +AC 8 82A 51 -65,-2.8 -66,-2.2 -2,-0.3 -65,-1.9 -0.988 31.0 145.9-130.6 119.5 -14.0 18.5 -11.9 74 76 A F E -AC 6 81A 0 7,-2.6 7,-3.0 -2,-0.4 2,-0.4 -0.948 39.1-124.2-150.2 164.5 -11.2 17.6 -9.5 75 77 A Y E -AC 5 80A 40 -70,-2.9 -70,-2.5 -2,-0.3 2,-0.5 -0.919 5.5-165.4-113.6 145.0 -8.7 15.0 -8.4 76 78 A L E > S-AC 4 79A 4 3,-2.5 3,-2.1 -2,-0.4 -72,-0.2 -0.970 79.7 -45.7-121.1 109.9 -8.2 13.4 -5.0 77 79 A G T 3 S- 0 0 30 -74,-2.5 -72,-0.1 -2,-0.5 -75,-0.0 -0.496 124.1 -26.8 59.0-128.2 -4.8 11.7 -5.4 78 80 A Q T 3 S+ 0 0 147 -2,-0.2 2,-0.6 -3,-0.1 -1,-0.3 0.419 116.6 104.8 -93.7 1.4 -4.9 10.0 -8.8 79 81 A V E < - C 0 76A 20 -3,-2.1 -3,-2.5 -20,-0.0 2,-0.3 -0.749 59.9-151.3 -89.4 122.8 -8.8 9.6 -8.7 80 82 A A E -BC 57 75A 0 -23,-1.7 -23,-2.6 -2,-0.6 2,-0.4 -0.728 11.8-169.7 -95.1 139.9 -10.7 12.1 -10.9 81 83 A I E -BC 56 74A 0 -7,-3.0 -7,-2.6 -2,-0.3 2,-0.4 -0.997 9.4-170.3-133.5 127.3 -14.2 13.1 -10.0 82 84 A L E +BC 55 73A 1 -27,-2.5 -27,-2.3 -2,-0.4 2,-0.4 -0.982 12.7 174.6-115.9 130.2 -16.7 15.0 -12.1 83 85 A L E +BC 54 72A 0 -11,-2.6 -11,-2.0 -2,-0.4 2,-0.3 -0.987 13.9 138.7-141.6 123.2 -19.8 16.2 -10.3 84 86 A F E -BC 53 71A 21 -31,-2.0 -31,-2.0 -2,-0.4 2,-0.4 -0.986 44.7-123.3-156.8 161.5 -22.5 18.4 -11.9 85 87 A K E -B 52 0A 21 -15,-2.0 -18,-2.6 -2,-0.3 -33,-0.2 -0.912 43.3-109.6-104.7 145.4 -26.1 19.3 -12.4 86 88 A S E C 0 66A 67 -35,-0.6 -20,-0.3 -2,-0.4 -15,-0.0 -0.442 360.0 360.0 -75.1 144.9 -27.4 19.5 -16.0 87 89 A G 0 0 93 -22,-2.1 -20,-0.2 -2,-0.1 -22,-0.1 -0.147 360.0 360.0 -94.2 360.0 -28.4 22.7 -17.7