==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/PEPTIDE 17-JUN-05 2BUO . COMPND 2 MOLECULE: HIV-1 CAPSID PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR F.TERNOIS,J.STICHT,S.DUQUERROY,H.-G.KRAUSSLICH,F.A.REY . 96 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6319.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 63.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 43.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 147 A P 0 0 84 0, 0.0 6,-0.1 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0-123.1 15.3 15.3 15.1 2 148 A T + 0 0 143 4,-0.0 2,-0.4 2,-0.0 3,-0.0 0.435 360.0 60.4 -76.4 3.4 17.7 16.9 12.7 3 149 A S S > S- 0 0 25 1,-0.1 3,-1.9 26,-0.1 4,-0.2 -0.992 77.9-137.0-133.5 139.7 16.0 14.9 10.0 4 150 A I G > S+ 0 0 0 -2,-0.4 3,-1.4 1,-0.3 22,-0.1 0.783 105.7 67.4 -61.6 -26.6 12.4 14.8 8.8 5 151 A L G 3 S+ 0 0 113 1,-0.3 -1,-0.3 -3,-0.0 -3,-0.0 0.694 94.3 59.0 -67.7 -17.1 12.8 11.0 8.7 6 152 A D G < S+ 0 0 85 -3,-1.9 2,-0.7 -5,-0.0 -1,-0.3 0.484 81.7 99.4 -91.0 -2.9 13.1 11.1 12.5 7 153 A I < + 0 0 6 -3,-1.4 2,-0.4 -4,-0.2 40,-0.1 -0.756 44.3 155.1 -91.2 114.6 9.7 12.7 13.1 8 154 A R - 0 0 142 -2,-0.7 40,-0.2 38,-0.0 2,-0.1 -0.994 46.0 -98.6-138.5 145.9 7.0 10.3 14.1 9 155 A Q - 0 0 8 38,-2.5 6,-0.1 -2,-0.4 -2,-0.0 -0.381 39.6-115.3 -65.7 133.1 3.8 10.8 16.1 10 156 A G > - 0 0 21 4,-0.2 3,-0.6 -2,-0.1 39,-0.2 -0.238 30.8-106.7 -61.5 155.3 3.8 9.8 19.7 11 157 A P T 3 S+ 0 0 110 0, 0.0 40,-0.2 0, 0.0 -1,-0.1 0.851 120.2 15.2 -54.1 -34.8 1.6 6.9 20.7 12 158 A K T 3 S+ 0 0 142 2,-0.1 -2,-0.1 37,-0.0 3,-0.1 0.188 96.4 132.3-123.8 15.4 -0.8 9.3 22.4 13 159 A E < - 0 0 32 -3,-0.6 36,-0.2 1,-0.1 64,-0.1 -0.497 65.4-107.9 -73.6 132.2 0.5 12.6 20.9 14 160 A P >> - 0 0 47 0, 0.0 4,-1.9 0, 0.0 3,-0.9 -0.320 22.5-128.4 -57.6 137.0 -2.2 14.9 19.6 15 161 A F H 3> S+ 0 0 5 57,-0.4 4,-2.6 60,-0.3 5,-0.2 0.873 108.9 59.4 -55.1 -39.1 -2.1 14.9 15.8 16 162 A R H 3> S+ 0 0 158 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.841 105.7 48.0 -60.8 -33.2 -2.0 18.7 15.8 17 163 A D H <> S+ 0 0 65 -3,-0.9 4,-2.3 2,-0.2 -1,-0.2 0.919 111.1 50.7 -71.5 -45.5 1.2 18.6 17.8 18 164 A Y H X S+ 0 0 0 -4,-1.9 4,-2.7 1,-0.2 5,-0.2 0.921 108.5 50.6 -58.4 -47.7 2.8 16.0 15.5 19 165 A V H X S+ 0 0 0 -4,-2.6 4,-2.9 1,-0.2 -1,-0.2 0.907 109.7 51.8 -60.0 -40.4 2.0 18.0 12.4 20 166 A D H X S+ 0 0 46 -4,-1.4 4,-2.8 -5,-0.2 -1,-0.2 0.938 111.8 45.6 -61.7 -46.2 3.6 21.1 13.9 21 167 A R H X S+ 0 0 88 -4,-2.3 4,-2.2 2,-0.2 -1,-0.2 0.897 112.8 51.2 -63.1 -40.4 6.8 19.2 14.8 22 168 A F H X S+ 0 0 0 -4,-2.7 4,-2.7 2,-0.2 -2,-0.2 0.937 111.8 47.8 -61.5 -47.5 6.8 17.7 11.3 23 169 A Y H X S+ 0 0 16 -4,-2.9 4,-2.3 2,-0.2 -2,-0.2 0.953 110.4 50.0 -59.6 -52.9 6.5 21.1 9.7 24 170 A K H X S+ 0 0 131 -4,-2.8 4,-1.1 1,-0.2 -1,-0.2 0.906 115.0 44.7 -54.9 -43.2 9.2 22.8 11.9 25 171 A T H X S+ 0 0 24 -4,-2.2 4,-1.1 1,-0.2 3,-0.3 0.900 110.6 53.1 -69.2 -40.7 11.6 20.0 11.0 26 172 A L H < S+ 0 0 0 -4,-2.7 3,-0.3 1,-0.2 -1,-0.2 0.858 102.4 59.3 -64.6 -33.7 10.7 19.9 7.3 27 173 A R H < S+ 0 0 153 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.897 109.7 43.4 -60.2 -39.9 11.4 23.7 7.0 28 174 A A H < S+ 0 0 83 -4,-1.1 -1,-0.2 -3,-0.3 -2,-0.2 0.650 90.3 110.9 -79.8 -18.3 15.0 23.1 8.2 29 175 A E S < S- 0 0 42 -4,-1.1 2,-1.2 -3,-0.3 -26,-0.1 -0.327 72.2-126.8 -61.1 134.5 15.4 20.0 6.0 30 176 A Q + 0 0 190 -2,-0.0 2,-0.3 6,-0.0 -1,-0.1 -0.708 65.8 105.7 -88.3 94.5 17.9 20.5 3.1 31 177 A A S S- 0 0 41 -2,-1.2 5,-0.0 -5,-0.1 0, 0.0 -0.974 73.0 -81.3-160.8 163.7 15.9 19.5 0.0 32 178 A S > - 0 0 52 -2,-0.3 4,-2.5 1,-0.1 5,-0.2 -0.257 41.6-114.0 -68.1 159.7 14.1 20.9 -3.0 33 179 A Q H > S+ 0 0 110 1,-0.2 4,-2.2 2,-0.2 55,-0.2 0.905 118.5 52.2 -62.4 -41.1 10.6 22.3 -2.6 34 180 A E H > S+ 0 0 152 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.867 110.5 48.8 -64.3 -34.0 9.2 19.6 -4.8 35 181 A V H > S+ 0 0 49 2,-0.2 4,-2.8 1,-0.2 -1,-0.2 0.900 108.3 53.1 -71.6 -38.7 10.9 17.0 -2.6 36 182 A K H X S+ 0 0 24 -4,-2.5 4,-2.0 1,-0.2 -2,-0.2 0.882 108.5 51.0 -63.4 -33.9 9.6 18.6 0.5 37 183 A N H X S+ 0 0 17 -4,-2.2 4,-2.5 2,-0.2 -1,-0.2 0.936 109.5 50.0 -66.7 -43.1 6.1 18.3 -1.0 38 184 A W H X S+ 0 0 158 -4,-2.0 4,-1.1 1,-0.2 5,-0.3 0.909 109.3 51.9 -59.9 -42.5 6.8 14.6 -1.7 39 185 A M H X>S+ 0 0 23 -4,-2.8 4,-1.5 1,-0.2 5,-0.9 0.890 111.5 46.3 -61.6 -40.0 7.9 14.2 1.9 40 186 A T H <5S+ 0 0 2 -4,-2.0 4,-0.4 1,-0.2 5,-0.4 0.874 109.1 55.4 -70.1 -36.5 4.7 15.8 3.2 41 187 A E H <5S+ 0 0 106 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 0.687 127.7 16.0 -69.5 -19.4 2.6 13.7 0.8 42 188 A T H X5S+ 0 0 52 -4,-1.1 4,-2.3 -3,-0.3 3,-0.2 0.746 123.4 47.7-119.1 -60.2 4.1 10.5 2.1 43 189 A L H X5S+ 0 0 20 -4,-1.5 4,-2.9 -5,-0.3 -3,-0.2 0.818 103.7 61.7 -56.3 -37.2 5.9 10.8 5.4 44 190 A L H 44 S+ 0 0 27 -5,-0.4 3,-1.2 1,-0.2 -1,-0.2 0.891 119.9 56.9 -71.5 -39.2 0.5 10.1 7.0 46 192 A Q H 3< S+ 0 0 99 -4,-2.3 -2,-0.2 1,-0.3 -1,-0.2 0.869 110.3 41.8 -60.4 -41.6 3.0 7.3 7.1 47 193 A N T 3< S+ 0 0 19 -4,-2.9 -38,-2.5 -5,-0.2 -1,-0.3 0.278 88.0 111.2 -93.2 12.5 4.6 8.3 10.4 48 194 A A S < S- 0 0 3 -3,-1.2 -3,-0.0 -40,-0.2 -33,-0.0 -0.427 82.3 -91.3 -75.6 160.7 1.4 9.1 12.1 49 195 A N > - 0 0 5 -39,-0.2 4,-3.2 -36,-0.2 3,-0.3 -0.236 43.3 -95.9 -69.9 165.6 0.5 6.7 14.9 50 196 A P H > S+ 0 0 96 0, 0.0 4,-1.6 0, 0.0 5,-0.1 0.875 121.7 49.2 -47.7 -46.7 -1.6 3.6 14.2 51 197 A D H > S+ 0 0 100 2,-0.2 4,-1.2 1,-0.2 5,-0.1 0.871 118.6 36.7 -66.5 -39.7 -4.9 5.2 15.3 52 198 A C H > S+ 0 0 0 -3,-0.3 4,-2.8 2,-0.2 5,-0.2 0.851 110.0 63.2 -79.8 -35.5 -4.5 8.4 13.3 53 199 A K H X S+ 0 0 68 -4,-3.2 4,-2.1 1,-0.2 -2,-0.2 0.875 104.1 49.4 -55.2 -38.3 -2.9 6.7 10.4 54 200 A T H X S+ 0 0 98 -4,-1.6 4,-1.8 -5,-0.2 -1,-0.2 0.930 110.6 47.8 -67.4 -47.2 -6.1 4.7 9.9 55 201 A I H X S+ 0 0 48 -4,-1.2 4,-1.7 1,-0.2 -2,-0.2 0.887 112.3 50.8 -61.7 -39.8 -8.3 7.8 10.0 56 202 A L H X S+ 0 0 4 -4,-2.8 4,-1.0 2,-0.2 -1,-0.2 0.929 106.4 52.4 -65.8 -46.5 -6.0 9.6 7.5 57 203 A K H >< S+ 0 0 140 -4,-2.1 3,-0.7 1,-0.2 -1,-0.2 0.902 109.1 53.3 -55.8 -40.6 -6.0 6.8 5.0 58 204 A A H 3< S+ 0 0 83 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.888 99.5 59.6 -62.2 -43.4 -9.8 6.8 5.1 59 205 A L H 3< S- 0 0 69 -4,-1.7 3,-0.2 1,-0.1 -1,-0.2 0.746 105.4-137.6 -59.7 -24.9 -10.1 10.6 4.3 60 206 A G X< - 0 0 25 -4,-1.0 3,-1.4 -3,-0.7 -1,-0.1 -0.037 26.7 -65.4 89.5 166.8 -8.3 10.0 1.1 61 207 A P T 3 S+ 0 0 139 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.646 126.7 62.2 -65.9 -18.0 -5.6 11.8 -0.9 62 208 A G T 3 S+ 0 0 69 -3,-0.2 -2,-0.1 2,-0.0 -3,-0.0 0.495 76.1 119.9 -89.3 -3.4 -7.8 14.8 -1.4 63 209 A A < - 0 0 9 -3,-1.4 2,-0.2 -7,-0.1 -3,-0.1 -0.242 58.2-132.8 -61.8 147.5 -8.2 15.6 2.3 64 210 A T > - 0 0 65 1,-0.1 4,-2.4 22,-0.1 5,-0.2 -0.608 23.3-109.8 -97.1 163.0 -7.1 19.1 3.5 65 211 A L H > S+ 0 0 8 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.903 121.1 52.8 -58.8 -40.4 -4.9 19.6 6.5 66 212 A E H > S+ 0 0 96 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.906 108.9 49.2 -61.9 -40.5 -7.9 21.2 8.3 67 213 A E H > S+ 0 0 103 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.890 111.1 49.7 -66.2 -38.2 -10.0 18.1 7.5 68 214 A M H X S+ 0 0 7 -4,-2.4 4,-1.8 2,-0.2 -2,-0.2 0.895 110.0 51.5 -65.7 -40.8 -7.3 15.8 8.8 69 215 A M H X S+ 0 0 21 -4,-2.5 4,-0.6 1,-0.2 3,-0.5 0.966 111.3 46.7 -58.6 -54.1 -7.1 17.9 12.0 70 216 A T H >< S+ 0 0 90 -4,-2.5 3,-0.6 1,-0.2 -1,-0.2 0.866 111.9 52.0 -56.7 -40.0 -10.8 17.7 12.6 71 217 A A H 3< S+ 0 0 33 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.798 113.8 41.0 -70.1 -31.3 -10.8 13.9 11.9 72 218 A C H >< S+ 0 0 3 -4,-1.8 3,-1.9 -3,-0.5 2,-0.6 0.368 81.2 129.4 -98.1 4.3 -8.0 13.1 14.4 73 219 A Q T << S+ 0 0 166 -4,-0.6 3,-0.1 -3,-0.6 -3,-0.0 -0.458 80.0 13.5 -63.5 110.3 -9.3 15.4 17.0 74 220 A G T > S+ 0 0 55 -2,-0.6 3,-1.2 1,-0.3 2,-0.5 0.247 84.4 137.0 110.1 -13.9 -9.4 13.3 20.2 75 221 A V T < S+ 0 0 31 -3,-1.9 -1,-0.3 1,-0.3 -60,-0.3 -0.568 84.9 7.1 -71.5 118.2 -7.4 10.3 19.1 76 222 A G T 3 S+ 0 0 24 -2,-0.5 -1,-0.3 1,-0.2 3,-0.2 0.168 131.7 41.8 95.7 -16.4 -5.1 9.4 22.0 77 223 A G < + 0 0 40 -3,-1.2 -1,-0.2 1,-0.2 -2,-0.0 0.329 24.1 175.3 -87.2-142.7 -6.9 12.0 24.2 78 224 A P - 0 0 132 0, 0.0 -1,-0.2 0, 0.0 -3,-0.1 -0.987 51.4-167.1 -62.4 -18.4 -9.1 13.6 25.4 79 225 A G + 0 0 76 1,-0.3 2,-0.3 -3,-0.2 -2,-0.1 0.736 32.5 140.7 75.3 22.7 -6.0 14.8 27.3 80 226 A H - 0 0 81 1,-0.1 -1,-0.3 3,-0.0 2,-0.1 -0.693 60.4 -97.1 -96.5 151.3 -7.9 16.7 30.0 81 227 A K - 0 0 191 -2,-0.3 2,-1.0 1,-0.1 -1,-0.1 -0.441 43.8-102.1 -68.4 139.2 -6.7 16.6 33.7 82 228 A A - 0 0 83 -2,-0.1 2,-1.3 1,-0.1 -1,-0.1 -0.473 35.6-142.6 -64.7 99.5 -8.5 14.0 35.8 83 229 A R 0 0 239 -2,-1.0 -1,-0.1 1,-0.0 -3,-0.0 -0.513 360.0 360.0 -70.6 93.7 -11.0 16.2 37.7 84 230 A V 0 0 192 -2,-1.3 -3,-0.0 0, 0.0 -1,-0.0 -0.099 360.0 360.0 -70.2 360.0 -11.1 14.6 41.2 85 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 86 1 T I 0 0 27 0, 0.0 2,-0.2 0, 0.0 -42,-0.1 0.000 360.0 360.0 360.0 165.9 -1.3 17.4 1.5 87 2 T T > - 0 0 35 -47,-0.1 4,-1.4 -46,-0.1 3,-0.5 -0.611 360.0-104.7-113.1 173.1 1.9 19.2 0.4 88 3 T F H > S+ 0 0 12 1,-0.2 4,-2.5 -55,-0.2 5,-0.1 0.853 121.7 59.7 -65.5 -33.1 4.6 21.2 2.1 89 4 T E H > S+ 0 0 88 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.817 100.8 54.6 -63.9 -31.5 3.0 24.3 0.6 90 5 T D H > S+ 0 0 65 -3,-0.5 4,-2.0 2,-0.2 -1,-0.2 0.877 108.1 49.4 -68.4 -38.6 -0.2 23.5 2.4 91 6 T L H X>S+ 0 0 0 -4,-1.4 4,-2.7 2,-0.2 5,-0.7 0.925 109.9 51.5 -65.5 -42.7 1.8 23.4 5.7 92 7 T L H X5S+ 0 0 35 -4,-2.5 4,-2.0 1,-0.2 -2,-0.2 0.918 112.0 45.3 -60.2 -45.4 3.3 26.8 4.8 93 8 T D H <5S+ 0 0 118 -4,-2.3 -1,-0.2 2,-0.2 -2,-0.2 0.851 114.3 50.8 -67.4 -32.2 -0.1 28.3 4.2 94 9 T Y H <5S+ 0 0 94 -4,-2.0 -2,-0.2 -5,-0.1 -1,-0.2 0.953 131.2 13.6 -69.7 -53.2 -1.5 26.7 7.4 95 10 T Y H <5S+ 0 0 61 -4,-2.7 -3,-0.2 -5,-0.1 -2,-0.2 0.791 129.0 32.0 -91.5 -35.9 1.2 27.9 9.8 96 11 T G << 0 0 26 -4,-2.0 -3,-0.1 -5,-0.7 -4,-0.1 0.530 360.0 360.0 -61.7-146.9 2.9 30.5 7.5 97 12 T P 0 0 156 0, 0.0 -1,-0.2 0, 0.0 -5,-0.1 -0.449 360.0 360.0 34.1 360.0 3.0 32.7 5.3