==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 05-JUL-05 2BVZ . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S6; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR D.E.OTZEN . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6272.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 78 80.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 34 35.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 24.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 121 0, 0.0 2,-0.3 0, 0.0 65,-0.0 0.000 360.0 360.0 360.0 161.0 5.0 8.6 20.4 2 2 A R E -A 67 0A 112 65,-2.6 65,-2.7 90,-0.0 2,-0.5 -0.920 360.0-118.3-131.5 157.0 4.4 6.6 17.2 3 3 A R E +A 66 0A 83 -2,-0.3 90,-2.3 63,-0.2 2,-0.3 -0.836 37.9 174.7-100.3 126.5 6.6 5.1 14.5 4 4 A Y E -AB 65 92A 24 61,-3.3 61,-2.9 -2,-0.5 2,-0.5 -0.850 29.1-132.4-129.0 164.5 6.1 6.4 11.0 5 5 A E E -AB 64 91A 37 86,-2.8 86,-2.1 -2,-0.3 2,-0.6 -0.979 19.6-156.9-117.5 124.9 7.6 6.1 7.5 6 6 A V E -AB 63 90A 3 57,-2.8 57,-2.0 -2,-0.5 2,-0.6 -0.924 4.4-164.7-108.7 118.6 8.2 9.3 5.6 7 7 A N E -AB 62 89A 43 82,-2.7 82,-1.9 -2,-0.6 2,-0.4 -0.905 11.1-176.5-105.0 115.5 8.4 9.0 1.8 8 8 A I E -AB 61 88A 2 53,-2.9 53,-2.8 -2,-0.6 2,-0.5 -0.932 14.3-160.9-118.5 136.4 9.9 12.0 0.1 9 9 A V E -AB 60 87A 1 78,-2.3 77,-2.7 -2,-0.4 78,-1.4 -0.964 17.2-165.1-113.7 126.4 10.4 12.7 -3.6 10 10 A L E -AB 59 85A 0 49,-2.9 49,-2.6 -2,-0.5 75,-0.2 -0.754 36.9 -78.5-112.4 160.1 12.9 15.3 -4.6 11 11 A N > - 0 0 26 73,-2.2 3,-0.8 -2,-0.3 47,-0.1 -0.294 42.4-142.0 -48.9 127.6 13.7 17.3 -7.8 12 12 A P T 3 S+ 0 0 18 0, 0.0 -1,-0.2 0, 0.0 46,-0.1 0.608 89.1 66.8 -75.6 -10.3 15.6 14.7 -9.9 13 13 A N T 3 + 0 0 111 46,-0.0 2,-0.3 2,-0.0 -2,-0.1 0.112 69.7 118.6-100.2 22.6 18.0 17.3 -11.3 14 14 A L < - 0 0 28 -3,-0.8 2,-0.2 70,-0.1 -4,-0.0 -0.641 60.7-128.4 -87.3 145.5 20.0 18.2 -8.2 15 15 A D >> - 0 0 88 -2,-0.3 4,-2.4 1,-0.1 3,-0.7 -0.525 36.8 -95.0 -86.2 161.5 23.7 17.5 -8.0 16 16 A Q H 3> S+ 0 0 175 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.753 124.4 57.8 -47.9 -28.8 25.1 15.6 -5.0 17 17 A S H 3> S+ 0 0 89 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.939 110.4 39.3 -68.9 -48.7 25.9 18.9 -3.3 18 18 A Q H <> S+ 0 0 82 -3,-0.7 4,-2.3 1,-0.2 -2,-0.2 0.862 114.2 56.8 -68.3 -36.8 22.3 20.3 -3.4 19 19 A L H X S+ 0 0 17 -4,-2.4 4,-2.1 1,-0.2 -2,-0.2 0.927 104.8 50.5 -60.3 -47.6 20.9 16.8 -2.6 20 20 A A H X S+ 0 0 47 -4,-2.0 4,-1.8 -5,-0.2 -1,-0.2 0.864 110.0 51.7 -59.7 -38.2 23.0 16.6 0.6 21 21 A L H X S+ 0 0 90 -4,-1.4 4,-2.4 2,-0.2 -1,-0.2 0.927 106.9 51.0 -65.6 -47.4 21.8 20.0 1.7 22 22 A E H X S+ 0 0 5 -4,-2.3 4,-2.4 1,-0.2 -1,-0.2 0.893 109.1 53.8 -57.5 -39.8 18.1 19.1 1.2 23 23 A K H X S+ 0 0 51 -4,-2.1 4,-2.4 2,-0.2 -1,-0.2 0.898 107.8 48.4 -62.7 -42.2 18.7 16.0 3.3 24 24 A E H X S+ 0 0 141 -4,-1.8 4,-2.7 1,-0.2 -1,-0.2 0.910 111.5 50.6 -65.4 -39.8 20.1 18.0 6.2 25 25 A I H X S+ 0 0 36 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.911 110.7 48.7 -63.7 -42.3 17.2 20.4 6.0 26 26 A I H X S+ 0 0 2 -4,-2.4 4,-2.5 2,-0.2 5,-0.2 0.939 112.7 48.4 -61.9 -47.8 14.7 17.5 6.1 27 27 A Q H X S+ 0 0 66 -4,-2.4 4,-2.4 1,-0.2 5,-0.2 0.926 111.7 49.1 -58.3 -48.4 16.5 15.9 9.1 28 28 A R H X S+ 0 0 162 -4,-2.7 4,-2.2 1,-0.2 -1,-0.2 0.899 111.5 49.2 -60.5 -42.2 16.6 19.2 11.0 29 29 A A H X S+ 0 0 10 -4,-2.3 4,-0.8 2,-0.2 -1,-0.2 0.925 111.3 48.6 -64.6 -45.0 12.9 19.8 10.4 30 30 A L H ><>S+ 0 0 3 -4,-2.5 5,-2.2 1,-0.2 3,-0.8 0.921 114.1 46.6 -61.2 -43.8 11.9 16.3 11.5 31 31 A E H ><5S+ 0 0 102 -4,-2.4 3,-1.7 1,-0.2 -1,-0.2 0.844 105.6 59.2 -68.0 -33.5 14.0 16.7 14.7 32 32 A N H 3<5S+ 0 0 109 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.698 105.0 51.9 -68.5 -17.0 12.7 20.1 15.4 33 33 A Y T <<5S- 0 0 43 -4,-0.8 -1,-0.3 -3,-0.8 -2,-0.2 0.224 130.8 -91.6-102.6 14.6 9.2 18.6 15.5 34 34 A G T < 5S+ 0 0 35 -3,-1.7 2,-0.3 1,-0.2 -3,-0.2 0.576 73.7 151.4 91.4 12.8 10.3 15.9 18.0 35 35 A A < - 0 0 10 -5,-2.2 2,-0.7 -6,-0.2 -1,-0.2 -0.551 38.6-150.6 -85.5 141.4 11.3 13.1 15.7 36 36 A R E -C 66 0A 128 30,-2.9 30,-1.8 -2,-0.3 2,-0.9 -0.943 20.8-143.1-102.7 112.9 13.9 10.4 16.4 37 37 A V E +C 65 0A 34 -2,-0.7 28,-0.2 28,-0.2 3,-0.1 -0.708 27.4 171.2 -82.5 108.2 15.3 9.5 13.0 38 38 A E E + 0 0 64 26,-2.0 2,-0.3 -2,-0.9 27,-0.2 0.820 62.0 6.4 -86.9 -34.0 15.9 5.7 13.2 39 39 A K E -C 64 0A 61 25,-1.5 25,-2.4 2,-0.0 2,-0.4 -0.989 55.8-166.1-154.5 142.3 16.7 4.9 9.6 40 40 A V E -C 63 0A 55 -2,-0.3 2,-0.4 23,-0.2 23,-0.2 -0.997 9.2-174.1-133.1 128.5 17.4 6.8 6.4 41 41 A E E -C 62 0A 78 21,-2.8 21,-2.5 -2,-0.4 2,-0.8 -0.978 18.4-150.5-127.5 134.6 17.5 5.3 2.9 42 42 A E E +C 61 0A 82 -2,-0.4 19,-0.2 19,-0.2 -2,-0.0 -0.900 19.5 174.4-100.7 108.1 18.3 6.8 -0.5 43 43 A L E - 0 0 83 17,-1.6 2,-0.2 -2,-0.8 18,-0.2 0.805 27.4-154.7 -84.5 -31.9 16.3 4.9 -3.0 44 44 A G E +C 60 0A 11 16,-1.6 16,-3.1 2,-0.0 2,-0.3 -0.577 41.1 3.4 97.0-158.7 17.2 7.0 -6.0 45 45 A L E +C 59 0A 101 14,-0.2 2,-0.3 -2,-0.2 14,-0.2 -0.511 60.1 165.7 -78.0 130.3 15.5 7.7 -9.3 46 46 A R E -C 58 0A 139 12,-1.9 12,-1.9 -2,-0.3 2,-0.6 -0.953 41.5-107.8-138.9 156.1 12.1 6.3 -10.1 47 47 A R E -C 57 0A 199 -2,-0.3 10,-0.2 10,-0.2 2,-0.1 -0.765 44.6-127.3 -84.7 122.4 9.4 6.9 -12.7 48 48 A L E - 0 0 15 8,-2.4 -1,-0.0 -2,-0.6 0, 0.0 -0.355 12.0-119.9 -73.5 152.2 6.5 8.7 -11.0 49 49 A A E S- 0 0 92 1,-0.3 -1,-0.1 -2,-0.1 8,-0.0 0.779 102.6 -1.0 -58.6 -27.9 2.9 7.5 -11.1 50 50 A Y E S- 0 0 137 5,-0.1 -1,-0.3 6,-0.0 5,-0.1 -0.937 93.3 -90.4-162.2 141.1 2.2 10.9 -12.6 51 51 A P E - 0 0 80 0, 0.0 2,-0.4 0, 0.0 3,-0.1 -0.190 34.5-163.3 -58.1 144.1 4.4 13.9 -13.5 52 52 A I E > S+C 55 0A 33 3,-2.1 3,-2.3 5,-0.2 5,-0.1 -0.998 76.5 2.1-130.2 133.5 5.0 16.7 -10.9 53 53 A A T 3 S- 0 0 66 -2,-0.4 -1,-0.1 1,-0.3 33,-0.0 0.842 130.8 -65.4 58.2 30.5 6.4 20.1 -11.8 54 54 A K T 3 S+ 0 0 187 1,-0.2 -1,-0.3 -3,-0.1 0, 0.0 0.462 111.6 122.6 72.2 0.2 6.4 18.7 -15.4 55 55 A D E < - C 0 52A 43 -3,-2.3 -3,-2.1 1,-0.1 -1,-0.2 -0.844 50.9-158.8 -98.4 127.6 9.0 16.1 -14.4 56 56 A P E S+ 0 0 64 0, 0.0 -8,-2.4 0, 0.0 2,-0.3 0.532 75.2 45.8 -79.6 -7.0 8.1 12.4 -15.0 57 57 A Q E - C 0 47A 70 -10,-0.2 2,-0.3 -5,-0.1 -10,-0.2 -0.895 62.7-170.9-133.5 164.4 10.7 11.2 -12.5 58 58 A G E - C 0 46A 0 -12,-1.9 -12,-1.9 -2,-0.3 2,-0.7 -0.962 29.9-108.8-149.6 165.2 11.9 12.0 -9.0 59 59 A Y E -AC 10 45A 54 -49,-2.6 -49,-2.9 -2,-0.3 2,-0.3 -0.888 40.1-142.9-100.8 116.3 14.7 11.2 -6.5 60 60 A F E -AC 9 44A 16 -16,-3.1 -17,-1.6 -2,-0.7 -16,-1.6 -0.610 20.0-179.1 -89.4 138.1 13.2 9.1 -3.6 61 61 A L E -AC 8 42A 2 -53,-2.8 -53,-2.9 -2,-0.3 2,-0.4 -0.980 7.9-163.0-129.4 141.0 14.2 9.3 0.1 62 62 A W E -AC 7 41A 24 -21,-2.5 -21,-2.8 -2,-0.4 2,-0.4 -0.985 6.0-174.7-129.6 136.8 12.7 7.1 2.8 63 63 A Y E -AC 6 40A 1 -57,-2.0 -57,-2.8 -2,-0.4 2,-0.6 -0.991 16.3-155.8-133.0 140.6 12.8 7.7 6.6 64 64 A Q E +AC 5 39A 3 -25,-2.4 -26,-2.0 -2,-0.4 -25,-1.5 -0.971 32.6 168.4-110.8 123.3 11.7 5.6 9.5 65 65 A V E -AC 4 37A 0 -61,-2.9 -61,-3.3 -2,-0.6 2,-0.5 -0.944 35.1-145.5-137.3 158.7 11.0 7.8 12.5 66 66 A E E +AC 3 36A 47 -30,-1.8 -30,-2.9 -2,-0.3 -63,-0.2 -0.995 42.6 142.3-120.6 122.0 9.4 7.8 15.9 67 67 A M E -A 2 0A 5 -65,-2.7 -65,-2.6 -2,-0.5 2,-0.2 -0.967 56.4 -70.5-154.3 169.2 7.7 11.1 16.8 68 68 A P >> - 0 0 31 0, 0.0 3,-1.8 0, 0.0 4,-0.7 -0.486 37.3-140.6 -66.6 129.0 4.6 12.7 18.5 69 69 A E G >4 S+ 0 0 118 1,-0.3 3,-0.6 -2,-0.2 4,-0.5 0.797 99.8 63.3 -60.8 -27.5 1.5 11.9 16.5 70 70 A D G 34 S+ 0 0 114 1,-0.2 -1,-0.3 2,-0.1 4,-0.2 0.579 105.5 45.7 -73.4 -9.9 0.2 15.5 17.2 71 71 A R G <> S+ 0 0 91 -3,-1.8 4,-2.3 2,-0.1 -1,-0.2 0.509 85.0 91.9-110.0 -9.4 3.2 17.0 15.3 72 72 A V H S+ 0 0 105 -4,-0.5 4,-2.0 1,-0.2 -1,-0.2 0.880 112.2 50.7 -60.1 -40.1 1.0 17.0 10.1 74 74 A D H > S+ 0 0 62 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.904 111.2 49.3 -64.1 -41.1 2.9 20.2 11.0 75 75 A A H X S+ 0 0 3 -4,-2.3 4,-2.3 1,-0.2 -2,-0.2 0.922 109.1 52.0 -63.5 -45.7 6.2 18.5 10.1 76 76 A A H X S+ 0 0 4 -4,-2.5 4,-2.0 1,-0.2 -1,-0.2 0.879 109.0 50.0 -59.2 -41.2 4.8 17.3 6.7 77 77 A R H X S+ 0 0 141 -4,-2.0 4,-1.0 2,-0.2 -1,-0.2 0.911 108.4 53.2 -64.0 -43.2 3.7 20.8 5.8 78 78 A E H >X S+ 0 0 76 -4,-1.9 3,-0.8 1,-0.2 4,-0.6 0.931 110.0 48.7 -56.7 -46.3 7.1 22.2 6.8 79 79 A L H >< S+ 0 0 6 -4,-2.3 3,-0.7 1,-0.2 -1,-0.2 0.870 105.5 58.3 -62.4 -39.2 8.7 19.6 4.4 80 80 A R H 3< S+ 0 0 122 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.680 92.8 67.3 -67.4 -19.8 6.3 20.5 1.5 81 81 A I H << S+ 0 0 110 -4,-1.0 -1,-0.2 -3,-0.8 -2,-0.2 0.839 74.4 100.3 -71.4 -32.9 7.3 24.2 1.4 82 82 A R S X< S- 0 0 89 -3,-0.7 3,-1.3 -4,-0.6 -60,-0.0 -0.315 74.8-137.4 -54.5 129.4 10.8 23.4 0.2 83 83 A D T 3 S+ 0 0 150 1,-0.3 -1,-0.1 -73,-0.0 -3,-0.0 0.834 101.2 53.4 -60.6 -35.4 10.9 24.0 -3.6 84 84 A N T 3 S+ 0 0 33 -74,-0.1 -73,-2.2 -73,-0.1 2,-0.8 0.553 87.3 92.6 -79.1 -6.8 12.9 20.9 -4.3 85 85 A V E < +B 10 0A 12 -3,-1.3 -75,-0.2 -75,-0.2 3,-0.1 -0.805 49.1 174.5 -90.1 112.5 10.5 18.7 -2.4 86 86 A R E + 0 0 50 -77,-2.7 2,-0.3 -2,-0.8 -76,-0.2 0.804 63.1 8.3 -88.0 -33.8 8.0 17.4 -4.9 87 87 A R E -B 9 0A 54 -78,-1.4 -78,-2.3 -35,-0.1 2,-0.4 -0.989 54.6-167.8-154.5 141.0 5.9 15.0 -2.8 88 88 A V E +B 8 0A 11 -2,-0.3 2,-0.4 -80,-0.2 -80,-0.2 -0.997 10.5 174.2-131.1 129.9 5.6 14.0 0.9 89 89 A M E -B 7 0A 92 -82,-1.9 -82,-2.7 -2,-0.4 2,-0.5 -0.962 9.2-167.2-141.2 120.3 3.7 11.0 2.1 90 90 A V E +B 6 0A 46 -2,-0.4 2,-0.3 -84,-0.2 -84,-0.2 -0.929 11.5 174.4-111.6 124.2 3.6 9.8 5.7 91 91 A V E -B 5 0A 51 -86,-2.1 -86,-2.8 -2,-0.5 2,-0.2 -0.902 38.1-101.0-124.4 154.7 2.2 6.4 6.6 92 92 A K E -B 4 0A 136 -2,-0.3 -88,-0.2 -88,-0.2 2,-0.2 -0.533 46.6-106.7 -72.5 138.8 2.1 4.5 9.9 93 93 A S + 0 0 20 -90,-2.3 -90,-0.1 -2,-0.2 -1,-0.1 -0.492 40.4 173.7 -68.9 131.3 4.9 1.9 10.2 94 94 A Q S S+ 0 0 165 -2,-0.2 -1,-0.2 1,-0.1 -90,-0.0 0.794 77.5 20.4-104.2 -44.5 3.5 -1.6 9.8 95 95 A E S S- 0 0 177 2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.690 84.7-162.1-130.9 79.0 6.8 -3.7 9.8 96 96 A P 0 0 67 0, 0.0 -91,-0.0 0, 0.0 -32,-0.0 -0.179 360.0 360.0 -63.5 149.3 9.6 -1.6 11.3 97 97 A F 0 0 167 -58,-0.0 -59,-0.0 0, 0.0 -2,-0.0 -0.625 360.0 360.0 -78.9 360.0 13.3 -2.2 11.0