==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION REGULATION 27-OCT-98 1BY9 . COMPND 2 MOLECULE: REGULATORY PROTEIN E2; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS TYPE 16; . AUTHOR R.S.HEGDE,E.J.ANDROPHY . 72 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4818.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 68.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 26.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 23.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 283 A T 0 0 106 0, 0.0 72,-0.2 0, 0.0 70,-0.0 0.000 360.0 360.0 360.0 -86.1 34.4 12.8 20.4 2 284 A T E -A 72 0A 51 70,-2.4 70,-2.7 46,-0.1 45,-0.1 -0.901 360.0-136.4-108.5 115.1 31.2 14.9 20.1 3 285 A P E -A 71 0A 2 0, 0.0 43,-1.7 0, 0.0 2,-0.3 -0.373 25.0-177.6 -68.1 140.4 29.0 14.3 17.0 4 286 A I E -AB 70 45A 20 66,-2.3 66,-1.7 41,-0.2 2,-0.4 -0.922 13.4-151.6-135.4 162.1 27.5 17.2 15.1 5 287 A V E -AB 69 44A 0 39,-2.2 39,-2.3 -2,-0.3 2,-0.5 -0.988 3.7-152.8-135.4 143.6 25.2 17.7 12.1 6 288 A H E -AB 68 43A 57 62,-2.9 62,-2.6 -2,-0.4 2,-0.6 -0.971 5.6-164.3-116.6 131.8 25.0 20.5 9.6 7 289 A L E -AB 67 42A 1 35,-2.4 35,-2.1 -2,-0.5 2,-0.4 -0.980 14.4-170.3-115.6 117.7 21.7 21.2 7.9 8 290 A K E +AB 66 41A 107 58,-2.8 58,-2.5 -2,-0.6 2,-0.3 -0.924 33.0 63.1-116.5 135.0 22.1 23.3 4.8 9 291 A G S S+ 0 0 24 31,-2.4 2,-0.2 -2,-0.4 56,-0.1 -0.982 79.3 9.5 162.7-149.1 19.4 25.0 2.7 10 292 A D > - 0 0 84 -2,-0.3 4,-2.4 54,-0.2 5,-0.2 -0.447 55.4-137.9 -67.1 132.1 16.7 27.6 2.7 11 293 A A H > S+ 0 0 45 1,-0.2 4,-1.8 2,-0.2 -1,-0.1 0.826 103.8 51.8 -60.2 -35.3 16.5 29.7 5.9 12 294 A N H > S+ 0 0 116 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.890 110.3 47.8 -69.6 -40.4 12.7 29.5 6.0 13 295 A T H > S+ 0 0 40 1,-0.2 4,-2.2 2,-0.2 -2,-0.2 0.891 112.3 50.5 -65.1 -40.3 12.8 25.7 5.7 14 296 A L H X S+ 0 0 2 -4,-2.4 4,-2.4 2,-0.2 -2,-0.2 0.852 107.7 53.0 -66.7 -35.1 15.5 25.6 8.4 15 297 A K H X S+ 0 0 129 -4,-1.8 4,-1.7 2,-0.2 -1,-0.2 0.894 109.6 48.8 -67.2 -38.9 13.3 27.9 10.7 16 298 A C H X S+ 0 0 67 -4,-1.9 4,-2.5 2,-0.2 -2,-0.2 0.908 111.1 50.1 -66.6 -42.2 10.4 25.4 10.3 17 299 A L H X S+ 0 0 6 -4,-2.2 4,-2.7 2,-0.2 -2,-0.2 0.933 108.1 52.0 -61.9 -46.4 12.7 22.4 11.1 18 300 A R H X S+ 0 0 51 -4,-2.4 4,-1.0 1,-0.2 -1,-0.2 0.890 109.4 51.9 -57.3 -38.7 14.0 24.1 14.2 19 301 A Y H >< S+ 0 0 144 -4,-1.7 3,-0.8 1,-0.2 4,-0.3 0.961 112.9 43.2 -61.1 -52.2 10.4 24.7 15.2 20 302 A R H >< S+ 0 0 100 -4,-2.5 3,-1.4 1,-0.2 4,-0.2 0.787 104.5 65.2 -65.3 -29.1 9.6 21.0 14.7 21 303 A F H >< S+ 0 0 6 -4,-2.7 3,-2.3 1,-0.3 -1,-0.2 0.794 86.0 72.1 -63.8 -29.8 12.8 19.9 16.4 22 304 A K G X< S+ 0 0 112 -4,-1.0 3,-0.9 -3,-0.8 -1,-0.3 0.753 88.5 62.9 -57.7 -24.2 11.5 21.4 19.7 23 305 A K G < S+ 0 0 129 -3,-1.4 -1,-0.3 -4,-0.3 -2,-0.2 0.654 108.9 40.5 -75.1 -16.7 9.1 18.4 19.8 24 306 A H G X S+ 0 0 60 -3,-2.3 3,-2.2 -4,-0.2 -1,-0.3 -0.317 72.0 148.0-125.3 47.9 12.1 16.1 20.0 25 307 A C G X + 0 0 81 -3,-0.9 3,-0.6 1,-0.3 -1,-0.1 0.647 68.4 59.4 -58.4 -18.5 14.2 18.2 22.4 26 308 A T G 3 S+ 0 0 111 1,-0.2 -1,-0.3 -3,-0.1 29,-0.1 0.520 90.7 71.5 -89.9 -3.7 15.7 15.0 24.0 27 309 A L G < S+ 0 0 9 -3,-2.2 28,-0.3 -6,-0.2 2,-0.3 0.397 103.2 33.0 -92.2 2.5 17.1 13.9 20.7 28 310 A Y < - 0 0 23 -3,-0.6 18,-0.2 -4,-0.2 3,-0.1 -0.985 63.6-140.6-153.1 156.0 19.9 16.5 20.5 29 311 A T S S- 0 0 71 16,-2.3 2,-0.3 1,-0.3 17,-0.2 0.889 81.7 -9.5 -85.2 -45.7 22.1 18.5 22.9 30 312 A A E -C 45 0A 48 15,-1.1 15,-1.8 2,-0.0 2,-0.4 -0.993 52.3-153.4-154.2 155.7 22.0 21.9 21.2 31 313 A V E -C 44 0A 35 -2,-0.3 13,-0.2 13,-0.2 2,-0.1 -0.998 22.0-134.5-133.4 135.7 20.9 23.7 18.1 32 314 A S - 0 0 33 11,-2.5 2,-0.1 -2,-0.4 3,-0.0 -0.282 21.8-101.8 -85.9 172.2 22.5 26.8 16.6 33 315 A S - 0 0 92 1,-0.1 2,-0.5 9,-0.1 10,-0.4 -0.329 58.7 -80.0 -79.1 172.5 21.1 30.0 15.2 34 316 A T + 0 0 50 8,-0.1 2,-0.2 -2,-0.1 8,-0.2 -0.665 61.0 170.6 -83.2 125.3 21.1 30.2 11.5 35 317 A W B -D 41 0A 64 6,-2.7 6,-2.5 -2,-0.5 2,-0.3 -0.691 14.6-160.5-124.7 179.4 24.4 31.2 10.0 36 318 A H - 0 0 135 -2,-0.2 2,-0.7 4,-0.2 0, 0.0 -0.942 36.4 -80.9-152.4 171.1 26.1 31.4 6.6 37 319 A W 0 0 199 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.722 360.0 360.0 -82.6 114.4 29.5 31.6 4.9 38 320 A T 0 0 137 -2,-0.7 -1,-0.1 0, 0.0 -3,-0.0 -0.418 360.0 360.0 -81.9 360.0 30.7 35.2 5.1 39 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 40 329 A A 0 0 45 0, 0.0 -31,-2.4 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 140.2 21.9 29.1 5.3 41 330 A I E -BD 8 35A 9 -6,-2.5 -6,-2.7 -33,-0.2 2,-0.4 -0.996 360.0-164.5-141.8 142.8 23.1 26.6 7.8 42 331 A V E -B 7 0A 4 -35,-2.1 -35,-2.4 -2,-0.4 2,-0.4 -0.965 13.9-150.0-123.2 141.5 22.2 25.2 11.2 43 332 A T E -B 6 0A 28 -10,-0.4 -11,-2.5 -2,-0.4 2,-0.4 -0.920 11.2-172.5-114.5 138.6 24.5 23.2 13.5 44 333 A L E -BC 5 31A 0 -39,-2.3 -39,-2.2 -2,-0.4 2,-0.3 -0.973 5.3-160.3-129.5 143.9 23.4 20.5 16.0 45 334 A T E -BC 4 30A 41 -15,-1.8 -16,-2.3 -2,-0.4 -15,-1.1 -0.829 8.3-166.2-117.1 160.2 25.5 18.6 18.6 46 335 A Y - 0 0 2 -43,-1.7 -18,-0.1 -2,-0.3 3,-0.1 -0.908 31.5-122.4-140.0 165.8 24.6 15.3 20.3 47 336 A D S S- 0 0 127 -2,-0.3 2,-0.3 1,-0.2 3,-0.1 0.695 91.8 -8.6 -83.1 -20.2 25.8 13.3 23.3 48 337 A S S > S- 0 0 49 1,-0.1 4,-1.9 -45,-0.1 -1,-0.2 -0.976 70.5 -98.5-164.5 172.1 26.6 10.3 21.2 49 338 A E H > S+ 0 0 101 -2,-0.3 4,-2.6 1,-0.2 5,-0.2 0.852 121.3 57.8 -67.8 -34.2 26.3 8.7 17.7 50 339 A W H > S+ 0 0 178 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.923 106.7 46.1 -62.0 -45.5 23.3 6.8 19.1 51 340 A Q H > S+ 0 0 20 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.907 111.2 53.6 -64.6 -40.3 21.5 10.0 20.0 52 341 A R H X S+ 0 0 26 -4,-1.9 4,-2.5 1,-0.2 -2,-0.2 0.925 111.2 45.5 -59.0 -45.8 22.3 11.4 16.6 53 342 A D H X S+ 0 0 73 -4,-2.6 4,-1.9 2,-0.2 -1,-0.2 0.842 109.0 54.9 -68.2 -33.8 20.9 8.4 14.8 54 343 A Q H X S+ 0 0 72 -4,-2.2 4,-1.4 2,-0.2 -1,-0.2 0.948 110.4 48.6 -61.2 -46.4 17.8 8.5 17.1 55 344 A F H >X S+ 0 0 0 -4,-2.5 4,-2.4 -28,-0.3 3,-0.6 0.942 112.5 45.8 -56.0 -54.2 17.3 12.1 15.9 56 345 A L H 3< S+ 0 0 61 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.769 113.3 50.5 -64.0 -26.8 17.8 11.3 12.2 57 346 A S H 3< S+ 0 0 92 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.725 116.0 42.5 -83.3 -20.0 15.4 8.3 12.5 58 347 A Q H << S+ 0 0 109 -4,-1.4 2,-0.5 -3,-0.6 -2,-0.2 0.759 103.8 65.1 -96.3 -31.6 12.7 10.4 14.2 59 348 A V S < S- 0 0 18 -4,-2.4 2,-0.7 -5,-0.2 -1,-0.1 -0.833 73.3-136.9-102.1 132.5 12.7 13.6 12.3 60 349 A K - 0 0 153 -2,-0.5 -3,-0.1 -43,-0.0 -4,-0.0 -0.753 21.8-163.4 -86.9 113.8 11.7 13.9 8.6 61 350 A I - 0 0 43 -2,-0.7 6,-0.1 -5,-0.2 4,-0.1 -0.873 23.7-111.1-103.3 125.3 14.1 16.1 6.8 62 351 A P > - 0 0 52 0, 0.0 3,-2.3 0, 0.0 -1,-0.0 -0.136 19.8-123.9 -52.0 141.6 13.1 17.5 3.4 63 352 A K T 3 S+ 0 0 210 1,-0.3 -2,-0.0 3,-0.0 0, 0.0 0.693 110.3 65.7 -61.4 -18.0 15.0 16.2 0.4 64 353 A T T 3 S+ 0 0 101 2,-0.1 2,-0.5 -54,-0.0 -1,-0.3 0.442 87.4 83.3 -84.6 -0.5 15.9 19.8 -0.5 65 354 A I S < S- 0 0 10 -3,-2.3 2,-0.5 -56,-0.1 -56,-0.2 -0.912 76.7-137.6-107.2 128.6 17.9 20.1 2.7 66 355 A T E -A 8 0A 67 -58,-2.5 -58,-2.8 -2,-0.5 2,-0.5 -0.723 16.7-157.2 -86.5 129.2 21.5 18.8 2.7 67 356 A V E +A 7 0A 61 -2,-0.5 2,-0.4 -60,-0.2 -60,-0.2 -0.926 12.7 179.8-110.8 124.7 22.5 16.9 5.7 68 357 A S E -A 6 0A 61 -62,-2.6 -62,-2.9 -2,-0.5 2,-0.3 -0.961 9.8-155.8-126.2 144.1 26.2 16.5 6.7 69 358 A T E +A 5 0A 87 -2,-0.4 2,-0.3 -64,-0.2 -64,-0.2 -0.786 24.1 139.9-115.4 159.0 27.7 14.7 9.7 70 359 A G E -A 4 0A 22 -66,-1.7 -66,-2.3 -2,-0.3 2,-0.3 -0.953 37.2-110.5-173.8-173.8 31.0 15.2 11.5 71 360 A F E -A 3 0A 102 -2,-0.3 2,-0.5 -68,-0.3 -26,-0.0 -0.989 12.4-143.1-140.4 146.2 32.7 15.2 14.9 72 361 A M E A 2 0A 110 -70,-2.7 -70,-2.4 -2,-0.3 -2,-0.0 -0.933 360.0 360.0-109.8 133.1 34.3 17.9 17.0 73 362 A S 0 0 137 -2,-0.5 -1,-0.2 -72,-0.2 0, 0.0 0.944 360.0 360.0 -87.3 360.0 37.4 17.0 19.0