==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN/TRANSCRIPTION 18-JAN-08 3BZQ . COMPND 2 MOLECULE: NITROGEN REGULATORY PROTEIN P-II; . SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; . AUTHOR M.C.REDDY,S.K.PALANINATHAN,N.D.SHETTY,J.L.OWEN,J.C.SACCHETTI . 99 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6436.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 62.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 28.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 20.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -1 A G 0 0 84 0, 0.0 85,-0.1 0, 0.0 84,-0.1 0.000 360.0 360.0 360.0 -72.8 -4.7 -7.8 -17.1 2 0 A H + 0 0 38 83,-0.1 53,-2.3 81,-0.1 2,-0.3 0.334 360.0 111.3 -97.9 3.3 -8.3 -7.2 -16.2 3 1 A M E -AB 54 84A 15 81,-0.5 81,-2.3 51,-0.2 2,-0.4 -0.592 45.2-173.9 -88.1 140.0 -7.5 -7.1 -12.5 4 2 A K E -AB 53 83A 56 49,-2.9 49,-2.6 -2,-0.3 2,-0.5 -0.979 19.9-140.7-133.4 143.7 -7.7 -4.0 -10.4 5 3 A L E -AB 52 82A 40 77,-3.1 77,-2.2 -2,-0.4 2,-0.5 -0.892 15.7-157.7 -96.3 129.8 -6.8 -3.0 -6.9 6 4 A I E -AB 51 81A 0 45,-3.0 45,-1.8 -2,-0.5 2,-0.5 -0.960 8.2-170.1-105.2 124.6 -9.2 -0.6 -5.1 7 5 A T E -AB 50 80A 1 73,-2.7 73,-2.7 -2,-0.5 2,-0.5 -0.980 2.1-172.6-115.3 122.7 -7.7 1.4 -2.3 8 6 A A E -AB 49 79A 0 41,-2.9 41,-3.0 -2,-0.5 2,-0.7 -0.971 11.4-165.4-118.4 123.3 -10.1 3.3 -0.0 9 7 A I E +AB 48 78A 12 69,-3.2 69,-1.4 -2,-0.5 2,-0.3 -0.946 34.8 151.6-104.8 110.5 -8.8 5.7 2.6 10 8 A V E -A 47 0A 2 37,-2.2 37,-2.8 -2,-0.7 67,-0.2 -0.853 51.0 -74.4-139.6 167.1 -11.9 6.4 4.8 11 9 A K > - 0 0 25 65,-0.4 3,-2.0 58,-0.3 4,-0.3 -0.391 44.5-122.1 -67.1 141.5 -13.0 7.3 8.3 12 10 A P G > S+ 0 0 54 0, 0.0 3,-1.5 0, 0.0 4,-0.3 0.821 107.9 61.2 -59.1 -33.1 -12.6 4.4 10.8 13 11 A F G 3 S+ 0 0 146 1,-0.3 4,-0.3 2,-0.1 3,-0.2 0.561 95.6 63.0 -71.9 -6.8 -16.3 4.4 11.8 14 12 A T G <> S+ 0 0 4 -3,-2.0 4,-2.5 1,-0.2 -1,-0.3 0.506 75.4 96.0 -91.7 -4.8 -17.3 3.7 8.2 15 13 A L H <> S+ 0 0 43 -3,-1.5 4,-3.0 -4,-0.3 5,-0.2 0.891 82.3 47.8 -54.4 -51.0 -15.6 0.3 8.1 16 14 A D H > S+ 0 0 116 -4,-0.3 4,-2.7 1,-0.2 -1,-0.2 0.903 113.3 49.2 -58.7 -43.3 -18.6 -1.8 9.0 17 15 A D H > S+ 0 0 97 -4,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.898 113.8 45.0 -63.7 -42.5 -20.7 -0.0 6.4 18 16 A V H X S+ 0 0 0 -4,-2.5 4,-2.3 2,-0.2 -2,-0.2 0.933 114.0 49.7 -66.1 -46.1 -18.1 -0.5 3.7 19 17 A K H X S+ 0 0 82 -4,-3.0 4,-2.9 -5,-0.2 5,-0.2 0.911 111.7 48.7 -57.6 -46.9 -17.5 -4.2 4.7 20 18 A T H X S+ 0 0 68 -4,-2.7 4,-2.7 -5,-0.2 5,-0.2 0.922 111.0 50.3 -60.0 -46.6 -21.3 -4.8 4.5 21 19 A S H X S+ 0 0 37 -4,-2.2 4,-0.9 2,-0.2 -2,-0.2 0.869 114.1 44.9 -60.0 -40.4 -21.6 -3.1 1.1 22 20 A L H <>S+ 0 0 1 -4,-2.3 5,-3.0 2,-0.2 3,-0.4 0.944 115.2 46.0 -68.5 -49.8 -18.7 -5.2 -0.2 23 21 A E H ><5S+ 0 0 93 -4,-2.9 3,-1.5 1,-0.2 -2,-0.2 0.863 109.1 55.0 -64.0 -38.7 -19.9 -8.5 1.2 24 22 A D H 3<5S+ 0 0 132 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.798 109.5 48.6 -62.5 -30.5 -23.5 -7.9 0.1 25 23 A A T 3<5S- 0 0 66 -4,-0.9 -1,-0.3 -3,-0.4 -2,-0.2 0.228 120.6-110.4 -93.7 11.4 -22.2 -7.5 -3.5 26 24 A G T < 5 + 0 0 57 -3,-1.5 2,-0.9 1,-0.2 -3,-0.2 0.739 67.7 148.6 65.6 25.2 -20.1 -10.7 -3.2 27 25 A V < - 0 0 7 -5,-3.0 3,-0.3 -6,-0.1 -1,-0.2 -0.824 27.0-176.5 -92.5 104.7 -16.8 -8.8 -3.1 28 26 A L + 0 0 116 -2,-0.9 24,-0.3 1,-0.2 -5,-0.0 -0.472 44.5 47.8-101.3 166.6 -14.6 -10.9 -1.0 29 27 A G + 0 0 63 1,-0.2 -1,-0.2 -2,-0.2 21,-0.1 0.592 62.9 168.7 86.6 15.5 -11.0 -10.7 0.4 30 28 A M - 0 0 38 -3,-0.3 2,-0.3 21,-0.1 -1,-0.2 -0.235 14.5-162.8 -61.3 144.5 -11.0 -7.2 1.8 31 29 A T E -C 50 0A 71 19,-1.9 19,-1.9 2,-0.0 2,-0.4 -0.902 2.7-153.2-121.9 158.9 -8.1 -6.1 4.0 32 30 A V E +C 49 0A 64 -2,-0.3 2,-0.3 17,-0.2 17,-0.2 -1.000 12.8 177.3-135.0 136.8 -7.9 -3.2 6.4 33 31 A S E -C 48 0A 51 15,-1.8 15,-3.0 -2,-0.4 2,-0.2 -0.937 33.1-105.8-132.7 155.2 -4.8 -1.3 7.6 34 32 A E E +C 47 0A 167 -2,-0.3 2,-0.3 13,-0.2 13,-0.2 -0.573 45.2 164.9 -79.0 145.5 -4.3 1.8 9.9 35 33 A I E -C 46 0A 47 11,-1.8 11,-3.2 -2,-0.2 2,-0.4 -0.977 29.8-133.3-156.6 157.2 -3.4 5.1 8.3 36 34 A Q E +C 45 0A 146 -2,-0.3 2,-0.3 9,-0.2 7,-0.0 -0.978 31.7 160.3-119.6 133.7 -3.3 8.8 9.0 37 35 A G E -C 44 0A 13 7,-2.2 7,-3.1 -2,-0.4 2,-0.1 -0.894 45.6 -64.1-142.8 173.5 -4.7 11.5 6.7 38 36 A Y E +C 43 0A 173 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.335 69.9 122.9 -63.6 135.9 -5.9 15.1 6.8 39 37 A G 0 0 19 3,-1.8 36,-0.1 1,-0.1 35,-0.0 -0.978 360.0 360.0-174.2 180.0 -8.9 15.9 8.9 40 38 A R 0 0 116 34,-0.4 -1,-0.1 -2,-0.3 35,-0.1 0.860 360.0 360.0 -99.8 360.0 -10.5 17.9 11.7 41 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 42 54 A D 0 0 154 0, 0.0 -3,-1.8 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 138.9 -3.1 18.0 10.8 43 55 A F E - C 0 38A 108 -5,-0.2 -5,-0.2 -7,-0.0 -7,-0.0 -0.606 360.0-169.7-101.0 151.0 -3.8 14.3 10.7 44 56 A V E - C 0 37A 31 -7,-3.1 -7,-2.2 -2,-0.2 2,-0.1 -0.927 39.2 -91.1-126.3 154.9 -6.7 12.1 12.0 45 57 A P E + C 0 36A 92 0, 0.0 2,-0.3 0, 0.0 -9,-0.2 -0.449 52.5 165.6 -63.8 136.3 -6.9 8.3 12.1 46 58 A K E - C 0 35A 12 -11,-3.2 -11,-1.8 -35,-0.2 2,-0.4 -0.819 29.7-118.1-135.5 178.4 -8.3 6.7 9.0 47 59 A V E -AC 10 34A 8 -37,-2.8 -37,-2.2 -2,-0.3 2,-0.6 -0.954 10.5-141.1-123.5 148.2 -8.4 3.2 7.6 48 60 A R E -AC 9 33A 70 -15,-3.0 -15,-1.8 -2,-0.4 2,-0.5 -0.940 21.0-170.0-107.1 110.2 -7.0 1.8 4.4 49 61 A I E -AC 8 32A 1 -41,-3.0 -41,-2.9 -2,-0.6 2,-0.4 -0.884 5.4-173.9-105.0 129.1 -9.4 -0.7 2.8 50 62 A E E +AC 7 31A 43 -19,-1.9 -19,-1.9 -2,-0.5 2,-0.3 -0.980 10.5 168.2-128.2 135.5 -8.2 -2.8 -0.1 51 63 A V E -A 6 0A 3 -45,-1.8 -45,-3.0 -2,-0.4 2,-0.5 -0.987 25.1-140.5-137.3 148.7 -9.9 -5.3 -2.5 52 64 A V E +A 5 0A 32 -24,-0.3 2,-0.3 -2,-0.3 -47,-0.2 -0.947 34.4 165.8-106.7 126.1 -8.8 -6.9 -5.7 53 65 A V E -A 4 0A 6 -49,-2.6 -49,-2.9 -2,-0.5 2,-0.2 -0.911 41.5 -97.5-135.8 160.5 -11.6 -7.1 -8.3 54 66 A D E >> -A 3 0A 49 -2,-0.3 3,-1.7 -51,-0.2 4,-0.6 -0.524 41.5-115.0 -70.7 148.0 -12.1 -7.8 -12.0 55 67 A D T 34 S+ 0 0 79 -53,-2.3 4,-0.5 1,-0.3 3,-0.2 0.671 108.3 77.8 -64.9 -13.9 -12.5 -4.6 -14.0 56 68 A S T 34 S+ 0 0 78 1,-0.2 -1,-0.3 -54,-0.1 4,-0.2 0.809 109.0 26.0 -60.3 -31.7 -16.1 -5.6 -14.8 57 69 A I T <> S+ 0 0 47 -3,-1.7 4,-2.6 2,-0.1 5,-0.3 0.431 91.6 102.1-112.7 -0.7 -17.2 -4.5 -11.3 58 70 A V H X S+ 0 0 14 -4,-0.6 4,-2.6 1,-0.2 5,-0.2 0.889 82.6 49.5 -56.5 -45.0 -14.5 -1.9 -10.5 59 71 A D H > S+ 0 0 124 -4,-0.5 4,-2.3 1,-0.2 -1,-0.2 0.921 115.0 42.0 -60.3 -48.7 -16.7 1.2 -11.2 60 72 A K H > S+ 0 0 125 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.843 113.4 52.7 -72.0 -32.3 -19.7 -0.0 -9.1 61 73 A V H X S+ 0 0 4 -4,-2.6 4,-2.5 2,-0.2 -2,-0.2 0.941 110.4 48.2 -65.6 -45.4 -17.5 -1.3 -6.3 62 74 A V H X S+ 0 0 25 -4,-2.6 4,-2.8 -5,-0.3 -2,-0.2 0.950 113.1 48.2 -56.7 -49.6 -15.8 2.2 -6.1 63 75 A D H X S+ 0 0 90 -4,-2.3 4,-2.5 1,-0.2 -1,-0.2 0.874 110.3 51.6 -60.2 -38.6 -19.2 3.9 -6.1 64 76 A S H X S+ 0 0 14 -4,-2.3 4,-2.0 2,-0.2 -1,-0.2 0.902 111.6 46.6 -66.3 -41.3 -20.5 1.5 -3.4 65 77 A I H X S+ 0 0 1 -4,-2.5 4,-2.0 2,-0.2 -2,-0.2 0.950 112.7 49.9 -63.3 -48.7 -17.5 2.3 -1.2 66 78 A V H X S+ 0 0 44 -4,-2.8 4,-1.5 1,-0.2 -2,-0.2 0.920 112.2 47.5 -55.9 -48.3 -17.8 6.0 -1.8 67 79 A R H < S+ 0 0 167 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.876 114.5 46.4 -61.4 -40.2 -21.6 6.0 -0.9 68 80 A A H < S+ 0 0 19 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.762 117.3 42.6 -74.2 -27.2 -21.0 3.9 2.2 69 81 A A H < S+ 0 0 4 -4,-2.0 -58,-0.3 -3,-0.2 -2,-0.2 0.588 87.9 109.8 -97.3 -13.8 -18.0 6.1 3.5 70 82 A R < + 0 0 159 -4,-1.5 -60,-0.0 -5,-0.2 7,-0.0 -0.388 24.4 159.3 -68.4 136.8 -19.4 9.5 2.7 71 83 A T - 0 0 59 2,-0.3 -1,-0.2 -2,-0.1 3,-0.1 0.426 54.8-119.2-122.9 -16.3 -20.5 11.8 5.6 72 84 A G S S+ 0 0 69 1,-0.3 2,-0.2 0, 0.0 -2,-0.1 0.380 78.3 113.7 88.5 -1.2 -20.3 15.1 3.7 73 85 A K S > S- 0 0 156 1,-0.1 3,-1.1 2,-0.0 -1,-0.3 -0.648 78.0 -85.2-103.1 157.7 -17.7 16.4 6.1 74 86 A I T 3 S+ 0 0 137 1,-0.2 -34,-0.4 -2,-0.2 -1,-0.1 -0.261 111.4 35.9 -55.9 141.0 -14.0 17.3 5.6 75 87 A G T 3 + 0 0 11 -36,-0.1 -1,-0.2 2,-0.1 3,-0.1 0.496 67.5 136.8 92.4 5.2 -11.6 14.3 5.8 76 88 A D < - 0 0 32 -3,-1.1 -65,-0.4 1,-0.2 2,-0.2 0.699 57.2-142.7 -57.3 -23.7 -14.0 11.7 4.2 77 89 A G - 0 0 43 -67,-0.2 2,-0.3 -39,-0.1 -67,-0.2 -0.533 9.5 -75.3 102.1-159.0 -11.0 10.4 2.2 78 90 A K E -B 9 0A 135 -69,-1.4 -69,-3.2 -2,-0.2 2,-0.4 -0.967 19.2-151.9-146.6 151.6 -10.3 9.1 -1.2 79 91 A V E +B 8 0A 37 -2,-0.3 2,-0.3 -71,-0.2 -71,-0.2 -0.996 22.4 178.3-128.7 127.1 -10.8 5.9 -3.3 80 92 A W E -B 7 0A 101 -73,-2.7 -73,-2.7 -2,-0.4 2,-0.4 -0.907 18.8-142.1-130.1 159.7 -8.4 5.1 -6.1 81 93 A V E +B 6 0A 66 -2,-0.3 -75,-0.2 -75,-0.2 -2,-0.0 -0.949 19.8 175.1-120.7 136.4 -7.9 2.3 -8.6 82 94 A S E -B 5 0A 35 -77,-2.2 -77,-3.1 -2,-0.4 2,-0.1 -0.971 34.5 -93.4-140.2 153.6 -4.6 0.8 -9.8 83 95 A P E -B 4 0A 94 0, 0.0 2,-0.5 0, 0.0 -79,-0.2 -0.378 25.4-158.5 -70.0 143.9 -3.6 -2.1 -12.1 84 96 A V E -B 3 0A 24 -81,-2.3 -81,-0.5 1,-0.1 3,-0.1 -0.988 3.1-168.9-119.0 118.5 -2.9 -5.6 -10.8 85 97 A D S S- 0 0 136 -2,-0.5 2,-0.3 1,-0.3 -1,-0.1 0.921 70.3 -9.0 -71.2 -46.8 -0.8 -7.8 -13.2 86 98 A T - 0 0 114 -85,-0.1 2,-0.3 10,-0.0 -1,-0.3 -0.983 58.2-161.7-151.4 154.1 -1.3 -11.1 -11.4 87 99 A I - 0 0 43 -2,-0.3 9,-1.6 -3,-0.1 2,-0.4 -0.997 3.8-166.5-142.9 139.6 -2.7 -12.4 -8.2 88 100 A V B -D 95 0B 67 -2,-0.3 2,-0.6 7,-0.2 7,-0.2 -0.994 20.1-135.9-127.4 130.9 -2.2 -15.8 -6.4 89 101 A R > - 0 0 88 5,-2.7 4,-2.8 -2,-0.4 5,-0.4 -0.787 20.6-147.1 -80.9 119.3 -4.2 -17.2 -3.6 90 102 A V T 4 S+ 0 0 143 -2,-0.6 -1,-0.2 1,-0.2 9,-0.0 0.899 88.7 53.6 -58.1 -48.4 -1.6 -18.6 -1.1 91 103 A R T 4 S+ 0 0 214 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.0 0.881 127.0 17.2 -55.3 -44.7 -3.5 -21.6 0.2 92 104 A T T 4 S- 0 0 60 -3,-0.3 -1,-0.2 2,-0.1 -2,-0.2 0.644 93.4-122.9-106.5 -22.5 -4.3 -23.2 -3.1 93 105 A G < + 0 0 40 -4,-2.8 -3,-0.1 1,-0.3 6,-0.1 0.546 54.5 160.1 79.7 8.0 -1.9 -21.5 -5.6 94 106 A E - 0 0 72 -5,-0.4 -5,-2.7 4,-0.2 2,-0.3 -0.338 22.5-157.0 -59.4 143.2 -5.0 -20.4 -7.6 95 107 A R B > -D 88 0B 171 -7,-0.2 3,-1.7 -3,-0.1 4,-0.2 -0.811 43.1 -9.6-123.5 162.5 -4.2 -17.6 -10.0 96 108 A G G > S+ 0 0 27 -9,-1.6 3,-1.7 -2,-0.3 4,-0.4 -0.213 130.6 0.1 57.6-131.5 -6.1 -14.8 -11.8 97 109 A H G > S+ 0 0 141 1,-0.3 3,-0.7 2,-0.2 -1,-0.3 0.749 130.9 62.0 -65.2 -23.7 -9.9 -15.1 -11.6 98 110 A D G < S+ 0 0 83 -3,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.680 102.7 51.8 -71.6 -18.8 -9.6 -18.3 -9.5 99 111 A A G < 0 0 9 -3,-1.7 -1,-0.2 -4,-0.2 -2,-0.2 0.489 360.0 360.0 -95.7 -5.9 -7.8 -16.3 -6.8 100 112 A L < 0 0 66 -3,-0.7 -71,-0.1 -4,-0.4 -47,-0.1 -0.293 360.0 360.0 -71.7 360.0 -10.4 -13.5 -6.5