==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 20-JUL-99 1C15 . COMPND 2 MOLECULE: APOPTOTIC PROTEASE ACTIVATING FACTOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR P.ZHOU,J.CHOU,R.S.OLEA,J.YUAN,G.WAGNER . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6947.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 74.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 17 17.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 52.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 2 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 242 0, 0.0 2,-0.8 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 128.6 -10.7 18.6 -0.5 2 2 A D > + 0 0 82 1,-0.2 4,-0.5 2,-0.1 3,-0.4 -0.819 360.0 171.9-106.7 99.5 -7.5 17.6 1.5 3 3 A A H >> S+ 0 0 75 -2,-0.8 4,-1.0 1,-0.2 3,-0.6 0.790 73.9 71.1 -75.5 -25.5 -4.5 17.5 -0.9 4 4 A K H >> S+ 0 0 104 1,-0.2 4,-1.8 2,-0.2 3,-0.5 0.882 87.6 64.3 -59.2 -35.7 -2.1 17.0 2.1 5 5 A A H 3> S+ 0 0 5 86,-0.4 4,-1.4 -3,-0.4 -1,-0.2 0.917 97.9 54.6 -56.1 -40.8 -3.5 13.4 2.5 6 6 A R H < S+ 0 0 4 -4,-1.4 3,-0.6 1,-0.2 -1,-0.2 0.901 116.2 51.4 -62.5 -36.9 1.2 8.3 1.7 10 10 A L H >< S+ 0 0 51 -4,-1.2 3,-0.5 1,-0.2 -1,-0.2 0.889 115.6 41.1 -67.9 -35.3 4.0 9.7 -0.6 11 11 A Q H 3< S+ 0 0 166 -4,-2.8 3,-0.4 1,-0.2 4,-0.3 0.429 97.8 80.4 -90.8 2.6 5.9 10.9 2.5 12 12 A H T S+ 0 0 125 -3,-0.5 4,-3.0 2,-0.2 5,-0.2 0.936 81.0 48.0 -69.2 -44.3 7.9 5.8 2.5 14 14 A E H > S+ 0 0 156 -3,-0.4 4,-1.1 1,-0.2 -1,-0.2 0.863 114.5 47.7 -65.5 -32.6 10.4 6.0 5.4 15 15 A A H > S+ 0 0 25 -4,-0.3 4,-1.7 2,-0.2 5,-0.3 0.918 118.5 38.5 -75.3 -42.3 7.6 4.8 7.8 16 16 A L H X S+ 0 0 5 -4,-2.3 4,-0.7 3,-0.2 -2,-0.2 0.885 107.9 64.0 -75.9 -37.4 6.5 1.9 5.6 17 17 A E H < S+ 0 0 42 -4,-3.0 -1,-0.2 -5,-0.3 -2,-0.2 0.908 114.7 32.6 -53.5 -41.4 10.1 1.0 4.5 18 18 A K H < S+ 0 0 182 -4,-1.1 -1,-0.2 -5,-0.2 -2,-0.2 0.839 132.0 33.6 -85.5 -34.3 10.9 0.1 8.1 19 19 A D H < S+ 0 0 97 -4,-1.7 2,-0.7 1,-0.3 -3,-0.2 0.955 129.3 22.8 -85.2 -65.5 7.5 -1.2 9.1 20 20 A I S < S- 0 0 11 -4,-0.7 2,-0.3 -5,-0.3 -1,-0.3 -0.875 72.2-168.9-108.4 111.1 6.0 -2.8 6.0 21 21 A K - 0 0 100 -2,-0.7 5,-0.3 -3,-0.2 4,-0.2 -0.759 53.8 -65.7 -97.1 141.7 8.7 -3.9 3.4 22 22 A T S S+ 0 0 34 -2,-0.3 2,-0.3 4,-0.1 -1,-0.1 0.149 95.9 117.2 -24.4 97.4 7.5 -5.0 -0.1 23 23 A S S >> S- 0 0 71 -3,-0.1 4,-3.0 0, 0.0 3,-1.3 -0.909 83.0 -49.9-157.4-176.8 5.6 -8.1 1.0 24 24 A Y H 3> S+ 0 0 121 1,-0.3 4,-2.4 -2,-0.3 5,-0.5 0.814 131.0 58.3 -33.5 -41.6 2.1 -9.7 1.1 25 25 A I H 3> S+ 0 0 14 -4,-0.2 4,-0.7 1,-0.2 -1,-0.3 0.965 116.2 31.9 -59.4 -50.0 0.8 -6.4 2.5 26 26 A M H <> S+ 0 0 0 -3,-1.3 4,-2.0 -5,-0.3 -2,-0.2 0.885 126.9 43.5 -75.6 -37.5 2.0 -4.4 -0.5 27 27 A D H X S+ 0 0 55 -4,-3.0 4,-2.7 2,-0.2 5,-0.4 0.983 110.9 50.8 -72.3 -57.6 1.5 -7.3 -3.0 28 28 A H H < S+ 0 0 82 -4,-2.4 4,-0.3 -5,-0.3 -1,-0.2 0.799 113.7 51.1 -51.7 -25.2 -1.9 -8.5 -1.8 29 29 A M H >X>S+ 0 0 14 -4,-0.7 3,-0.9 -5,-0.5 5,-0.8 0.970 111.9 40.8 -78.6 -57.1 -3.0 -4.8 -2.0 30 30 A I H ><>S+ 0 0 6 -4,-2.0 3,-1.5 1,-0.3 5,-1.0 0.948 117.3 49.4 -57.1 -47.3 -1.9 -4.0 -5.6 31 31 A S T 3<5S+ 0 0 35 -4,-2.7 -1,-0.3 1,-0.3 -2,-0.2 0.705 91.7 82.4 -66.3 -15.2 -3.1 -7.4 -6.8 32 32 A D T <45S- 0 0 90 -3,-0.9 -1,-0.3 -5,-0.4 -2,-0.2 0.835 126.2 -81.0 -59.7 -28.9 -6.4 -6.6 -5.0 33 33 A G T <<5S+ 0 0 57 -3,-1.5 -2,-0.1 -4,-0.6 -3,-0.1 0.182 107.0 104.3 148.3 -18.1 -7.4 -4.6 -8.1 34 34 A F T - 0 0 99 -2,-0.3 3,-1.1 1,-0.1 4,-0.3 -0.272 33.7-128.2 -60.7 147.7 -2.4 -4.7 -12.7 37 37 A I T >> S+ 0 0 102 1,-0.2 3,-1.4 2,-0.2 4,-1.0 0.726 100.8 80.3 -71.4 -17.8 -0.7 -7.8 -11.3 38 38 A S H 3> S+ 0 0 96 1,-0.3 4,-1.0 2,-0.2 -1,-0.2 0.830 83.7 62.6 -58.8 -27.9 1.8 -7.6 -14.1 39 39 A E H <> S+ 0 0 37 -3,-1.1 4,-2.8 1,-0.2 5,-0.3 0.813 93.6 63.6 -68.4 -26.5 3.6 -4.9 -12.1 40 40 A E H <> S+ 0 0 74 -3,-1.4 4,-2.0 -4,-0.3 -1,-0.2 0.960 100.4 49.2 -63.3 -49.1 4.2 -7.4 -9.3 41 41 A E H X S+ 0 0 152 -4,-1.0 4,-0.6 2,-0.2 -1,-0.2 0.829 115.4 47.4 -60.8 -28.0 6.5 -9.6 -11.5 42 42 A K H >X S+ 0 0 125 -4,-1.0 4,-2.8 2,-0.2 3,-1.5 0.974 109.4 48.1 -77.9 -58.6 8.4 -6.5 -12.5 43 43 A V H 3< S+ 0 0 19 -4,-2.8 -2,-0.2 1,-0.3 -3,-0.2 0.849 99.3 73.3 -50.9 -33.4 8.9 -4.9 -9.1 44 44 A R H 3< S- 0 0 179 -4,-2.0 -1,-0.3 -5,-0.3 -2,-0.2 0.900 127.0 -2.9 -50.8 -42.9 10.1 -8.3 -7.9 45 45 A N H << S+ 0 0 119 -3,-1.5 -2,-0.2 -4,-0.6 -1,-0.2 0.295 114.7 88.3-134.3 8.9 13.4 -7.9 -9.8 46 46 A E S < S+ 0 0 101 -4,-2.8 -3,-0.2 -5,-0.1 -2,-0.1 0.975 85.3 53.1 -74.0 -53.6 13.0 -4.5 -11.6 47 47 A P - 0 0 16 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.209 59.3-174.5 -74.4 170.3 14.4 -2.3 -8.8 48 48 A T + 0 0 124 -2,-0.0 2,-0.1 0, 0.0 -2,-0.0 0.556 63.7 35.1-135.8 -38.2 17.8 -3.0 -7.2 49 49 A Q S > S- 0 0 153 3,-0.0 3,-2.1 1,-0.0 4,-0.2 -0.152 115.9 -57.6-104.2-157.5 18.3 -0.5 -4.3 50 50 A Q T >> S+ 0 0 104 1,-0.3 3,-1.1 2,-0.2 4,-1.0 0.754 118.6 86.7 -58.1 -19.8 15.8 1.0 -1.8 51 51 A Q H 3> S+ 0 0 107 1,-0.2 4,-2.6 2,-0.2 5,-0.4 0.791 71.4 77.1 -52.8 -23.8 13.9 2.3 -4.8 52 52 A R H <> S+ 0 0 107 -3,-2.1 4,-1.1 1,-0.3 -1,-0.2 0.959 103.3 32.7 -53.0 -53.1 12.2 -1.1 -4.8 53 53 A A H <> S+ 0 0 9 -3,-1.1 4,-0.9 -4,-0.2 -1,-0.3 0.606 115.5 62.6 -80.7 -8.7 9.9 -0.1 -1.9 54 54 A A H X S+ 0 0 17 -4,-1.0 4,-1.5 -3,-0.2 -2,-0.2 0.862 106.4 41.1 -83.8 -36.0 9.9 3.5 -3.1 55 55 A M H X S+ 0 0 83 -4,-2.6 4,-2.0 2,-0.2 -2,-0.2 0.798 110.3 58.9 -81.2 -27.4 8.2 2.8 -6.4 56 56 A L H X S+ 0 0 9 -4,-1.1 4,-0.9 -5,-0.4 -1,-0.2 0.904 109.9 42.6 -68.9 -38.2 5.7 0.3 -4.9 57 57 A I H >X S+ 0 0 2 -4,-0.9 4,-1.2 2,-0.2 3,-0.5 0.940 114.4 49.3 -74.2 -45.8 4.3 3.0 -2.5 58 58 A K H 3X S+ 0 0 112 -4,-1.5 4,-3.3 1,-0.2 5,-0.2 0.911 104.2 61.2 -60.6 -38.4 4.2 5.8 -5.1 59 59 A M H 3X S+ 0 0 44 -4,-2.0 4,-1.2 1,-0.2 -1,-0.2 0.886 97.5 59.9 -56.5 -36.1 2.4 3.4 -7.5 60 60 A I H S+ 0 0 75 -2,-0.3 4,-1.3 1,-0.2 3,-0.2 0.720 105.5 73.2 -84.2 -20.1 -6.8 7.9 -3.9 66 66 A D H > S+ 0 0 114 1,-0.2 4,-1.5 2,-0.2 3,-0.5 0.929 93.2 53.6 -60.4 -43.0 -9.4 5.1 -3.4 67 67 A S H > S+ 0 0 4 1,-0.2 4,-2.2 -7,-0.2 -1,-0.2 0.863 102.2 59.8 -61.3 -32.5 -6.6 2.5 -3.0 68 68 A Y H > S+ 0 0 7 -4,-0.5 4,-1.0 -3,-0.2 -1,-0.2 0.895 104.5 48.9 -64.1 -37.2 -5.0 4.7 -0.3 69 69 A V H X S+ 0 0 97 -4,-1.3 4,-1.1 -3,-0.5 -1,-0.2 0.853 109.3 53.0 -72.1 -31.8 -8.1 4.4 1.8 70 70 A S H >X S+ 0 0 45 -4,-1.5 4,-2.7 1,-0.2 3,-0.6 0.936 101.2 58.4 -69.9 -43.6 -8.3 0.6 1.4 71 71 A F H 3X S+ 0 0 5 -4,-2.2 4,-1.7 1,-0.3 5,-0.2 0.884 102.0 57.2 -53.9 -35.7 -4.7 0.1 2.5 72 72 A Y H 3X S+ 0 0 54 -4,-1.0 4,-1.2 1,-0.2 -1,-0.3 0.906 113.0 38.5 -63.7 -38.5 -5.7 1.7 5.8 73 73 A N H X>S+ 0 0 0 -4,-1.7 3,-1.5 -5,-0.2 4,-0.9 0.899 109.7 55.6 -78.4 -40.1 -3.8 -3.3 7.9 76 76 A L H 3<5S+ 0 0 59 -4,-1.2 -1,-0.2 1,-0.3 -2,-0.2 0.707 91.2 77.4 -65.7 -15.5 -6.5 -2.8 10.6 77 77 A H T 3<5S+ 0 0 155 -4,-0.9 -1,-0.3 -5,-0.1 -2,-0.2 0.809 111.8 18.4 -65.4 -26.3 -7.9 -6.2 9.4 78 78 A E T <45S- 0 0 118 -3,-1.5 -2,-0.2 -4,-0.3 -3,-0.1 0.767 129.0 -59.6-108.0 -75.2 -5.1 -8.0 11.3 79 79 A G T <5S+ 0 0 56 -4,-0.9 -3,-0.2 2,-0.0 3,-0.1 -0.115 88.1 113.6-175.0 62.9 -3.4 -5.8 14.0 80 80 A Y >< + 0 0 84 -5,-0.7 4,-3.1 2,-0.1 5,-0.4 0.173 28.6 126.3-124.9 16.2 -1.7 -2.7 12.6 81 81 A K H > S+ 0 0 148 -6,-0.2 4,-1.8 1,-0.2 5,-0.2 0.812 72.0 63.1 -46.3 -29.2 -3.9 -0.0 14.3 82 82 A D H > S+ 0 0 137 2,-0.2 4,-1.0 1,-0.2 3,-0.2 0.998 115.0 25.7 -62.1 -65.1 -0.6 1.5 15.6 83 83 A L H >> S+ 0 0 19 1,-0.2 4,-1.3 2,-0.2 3,-0.5 0.914 117.5 63.4 -66.8 -39.8 0.9 2.4 12.3 84 84 A A H 3X S+ 0 0 0 -4,-3.1 4,-2.3 1,-0.3 5,-0.2 0.896 99.4 55.0 -52.4 -39.3 -2.5 2.7 10.6 85 85 A A H 3X S+ 0 0 30 -4,-1.8 4,-2.0 -5,-0.4 -1,-0.3 0.905 97.9 63.7 -63.1 -38.2 -3.3 5.6 13.0 86 86 A L H << S+ 0 0 93 -4,-1.0 4,-0.4 -3,-0.5 -1,-0.2 0.930 110.6 37.2 -52.5 -46.4 -0.1 7.4 11.8 87 87 A L H >X S+ 0 0 0 -4,-1.3 4,-2.1 -3,-0.2 3,-1.5 0.952 117.9 48.6 -73.1 -48.5 -1.5 7.7 8.3 88 88 A H H 3< S+ 0 0 83 -4,-2.3 5,-0.2 1,-0.3 -1,-0.2 0.710 106.2 61.2 -65.4 -16.1 -5.1 8.3 9.3 89 89 A D T 3< S+ 0 0 98 -4,-2.0 -1,-0.3 -5,-0.2 -2,-0.2 0.665 113.4 33.4 -85.0 -14.8 -3.8 11.0 11.7 90 90 A G T <4 S+ 0 0 15 -3,-1.5 -2,-0.2 -4,-0.4 -1,-0.1 0.648 105.1 70.1-111.3 -22.9 -2.3 13.1 8.9 91 91 A I S < S+ 0 0 29 -4,-2.1 -86,-0.4 -5,-0.1 -3,-0.1 0.967 110.6 29.9 -60.6 -52.1 -4.8 12.4 6.1 92 92 A P S S- 0 0 70 0, 0.0 2,-0.2 0, 0.0 -87,-0.1 0.950 133.3 -5.6 -72.1 -88.4 -7.6 14.4 7.7 93 93 A V - 0 0 77 -5,-0.2 -91,-0.0 1,-0.2 4,-0.0 -0.651 59.5-136.0-105.9 165.8 -6.1 17.2 9.9 94 94 A V - 0 0 74 -2,-0.2 -1,-0.2 -3,-0.1 -3,-0.1 0.955 57.6 -80.0 -84.3 -68.6 -2.4 17.9 10.6 95 95 A S S S+ 0 0 111 -5,-0.1 -2,-0.0 0, 0.0 -5,-0.0 0.210 112.9 24.1-164.9 -52.9 -2.3 18.7 14.4 96 96 A S 0 0 108 0, 0.0 -3,-0.0 0, 0.0 0, 0.0 0.906 360.0 360.0 -93.7 -60.6 -3.3 22.3 15.2 97 97 A S 0 0 134 -4,-0.0 0, 0.0 0, 0.0 0, 0.0 0.760 360.0 360.0-113.2 360.0 -5.5 23.4 12.3