==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DE NOVO PROTEIN 28-JUL-99 1C3T . COMPND 2 MOLECULE: PROTEIN (1D8 UBIQUITIN); . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.A.LAZAR,E.C.JOHNSON,J.R.DESJARLAIS,T.M.HANDEL . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4966.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 19.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 32 0, 0.0 16,-1.6 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 173.1 3.8 -19.4 -2.5 2 2 A Q E -A 16 0A 68 14,-0.2 62,-2.9 12,-0.0 2,-0.4 -0.760 360.0-167.6-102.3 147.8 6.1 -16.4 -3.1 3 3 A L E -A 15 0A 4 12,-2.0 12,-1.9 -2,-0.3 2,-0.3 -0.992 11.5-143.3-138.8 129.2 5.0 -13.0 -4.3 4 4 A F E -Ab 14 66A 61 61,-1.9 63,-0.8 -2,-0.4 2,-0.3 -0.717 19.5-174.5 -92.7 139.6 7.1 -10.1 -5.5 5 5 A V E -Ab 13 67A 13 8,-1.4 8,-2.9 -2,-0.3 2,-0.3 -0.987 5.3-167.3-135.6 144.1 6.2 -6.5 -4.7 6 6 A K E -Ab 12 68A 79 61,-2.3 63,-3.4 -2,-0.3 6,-0.2 -0.934 1.5-166.7-130.5 153.5 7.6 -3.1 -5.8 7 7 A T > - 0 0 41 4,-0.6 3,-0.7 -2,-0.3 63,-0.1 -0.273 51.2 -70.3-117.2-156.2 7.1 0.5 -4.6 8 8 A L T 3 S+ 0 0 130 1,-0.2 62,-0.1 61,-0.2 60,-0.0 0.232 128.0 58.4 -86.7 14.2 7.9 4.0 -5.9 9 9 A T T 3 S- 0 0 110 2,-0.2 -1,-0.2 0, 0.0 3,-0.1 0.448 111.3-114.2-118.1 -8.7 11.6 3.2 -5.3 10 10 A G < + 0 0 57 -3,-0.7 2,-0.4 1,-0.3 -2,-0.1 0.600 63.8 150.8 83.4 11.5 12.0 0.2 -7.5 11 11 A K - 0 0 117 1,-0.0 -4,-0.6 0, 0.0 2,-0.5 -0.656 37.6-143.8 -81.7 126.7 12.6 -2.0 -4.5 12 12 A T E -A 6 0A 97 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.785 16.6-165.4 -94.3 129.2 11.5 -5.7 -5.0 13 13 A L E -A 5 0A 24 -8,-2.9 -8,-1.4 -2,-0.5 2,-0.4 -0.759 9.5-148.6-111.8 158.8 10.1 -7.5 -2.0 14 14 A T E +A 4 0A 67 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.952 21.7 168.7-132.6 114.2 9.5 -11.2 -1.4 15 15 A V E -A 3 0A 4 -12,-1.9 -12,-2.0 -2,-0.4 2,-0.7 -0.860 30.7-128.6-122.8 157.8 6.6 -12.5 0.8 16 16 A E E +A 2 0A 106 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.901 42.0 149.8-110.7 108.1 5.1 -15.9 1.4 17 17 A L - 0 0 5 -16,-1.6 -2,-0.0 -2,-0.7 9,-0.0 -0.988 36.9-128.0-138.5 147.1 1.3 -16.0 1.1 18 18 A E > - 0 0 101 -2,-0.3 3,-1.0 1,-0.1 38,-0.4 -0.566 27.3-114.8 -92.1 157.0 -1.2 -18.6 -0.0 19 19 A P T 3 S+ 0 0 57 0, 0.0 38,-2.4 0, 0.0 39,-0.2 0.643 117.3 59.1 -63.1 -13.8 -3.9 -18.2 -2.7 20 20 A S T 3 S+ 0 0 84 36,-0.2 38,-0.0 35,-0.1 -3,-0.0 0.773 85.2 97.5 -85.5 -29.3 -6.5 -18.6 0.1 21 21 A D S < S- 0 0 43 -3,-1.0 35,-1.9 34,-0.1 36,-0.3 -0.107 72.0-126.3 -56.9 158.2 -5.2 -15.6 2.1 22 22 A T B >> -E 55 0B 36 33,-0.3 4,-1.8 34,-0.1 3,-1.0 -0.729 23.0-104.3-109.5 159.6 -6.9 -12.2 1.7 23 23 A V H 3> S+ 0 0 0 31,-2.9 4,-2.5 28,-0.4 5,-0.2 0.889 119.9 62.0 -44.9 -47.4 -5.6 -8.8 0.8 24 24 A E H 3> S+ 0 0 119 1,-0.2 4,-1.9 2,-0.2 -1,-0.3 0.907 104.0 48.4 -46.4 -49.2 -5.9 -7.8 4.4 25 25 A N H <> S+ 0 0 56 -3,-1.0 4,-1.8 1,-0.2 -1,-0.2 0.941 107.5 54.8 -58.0 -49.8 -3.4 -10.5 5.3 26 26 A L H X S+ 0 0 12 -4,-1.8 4,-1.7 1,-0.3 3,-0.4 0.924 106.3 51.8 -49.6 -50.2 -1.0 -9.3 2.5 27 27 A K H X S+ 0 0 11 -4,-2.5 4,-1.3 1,-0.3 -1,-0.3 0.901 103.6 58.8 -54.5 -42.9 -1.0 -5.8 4.0 28 28 A A H >X S+ 0 0 42 -4,-1.9 4,-2.1 1,-0.3 3,-0.6 0.901 103.5 51.9 -53.7 -43.1 -0.2 -7.3 7.4 29 29 A K H 3X S+ 0 0 52 -4,-1.8 4,-1.1 -3,-0.4 5,-0.3 0.890 106.0 53.8 -61.3 -39.8 3.0 -8.7 5.8 30 30 A I H 3X>S+ 0 0 10 -4,-1.7 6,-1.3 1,-0.2 5,-1.2 0.745 111.8 46.4 -66.4 -22.8 3.9 -5.3 4.4 31 31 A Q H <<5S+ 0 0 107 -4,-1.3 -2,-0.2 -3,-0.6 -1,-0.2 0.775 110.9 50.0 -88.2 -31.1 3.5 -4.0 8.0 32 32 A D H <5S+ 0 0 109 -4,-2.1 -2,-0.2 -5,-0.2 -3,-0.2 0.585 127.7 25.1 -82.5 -11.4 5.5 -6.8 9.6 33 33 A K H <5S+ 0 0 105 -4,-1.1 -3,-0.2 -5,-0.2 -2,-0.2 0.741 142.0 14.4-114.2 -63.2 8.3 -6.2 7.0 34 34 A E T <5S- 0 0 86 -4,-1.0 -3,-0.2 -5,-0.3 -4,-0.1 0.677 94.3-129.0 -89.8 -20.9 8.2 -2.7 5.7 35 35 A G < + 0 0 48 -5,-1.2 -4,-0.3 -6,-0.2 -3,-0.1 0.911 52.1 152.4 73.4 43.4 5.9 -1.4 8.4 36 36 A I - 0 0 42 -6,-1.3 -1,-0.2 -9,-0.2 -2,-0.1 -0.913 47.2-111.3-111.6 132.3 3.4 0.2 6.1 37 37 A P > - 0 0 52 0, 0.0 3,-1.1 0, 0.0 -9,-0.0 -0.187 22.7-123.4 -57.1 147.1 -0.3 0.7 7.0 38 38 A P G > S+ 0 0 45 0, 0.0 3,-1.6 0, 0.0 14,-0.0 0.926 113.8 47.8 -58.0 -49.3 -2.9 -1.4 5.0 39 39 A D G 3 S+ 0 0 119 1,-0.3 33,-0.1 3,-0.1 13,-0.0 0.511 106.4 62.4 -71.7 -3.4 -4.8 1.7 3.8 40 40 A Q G < S+ 0 0 71 -3,-1.1 2,-0.5 31,-0.1 -1,-0.3 0.240 90.6 79.9-104.5 10.9 -1.5 3.2 2.9 41 41 A Q < - 0 0 6 -3,-1.6 2,-0.7 30,-0.2 30,-0.2 -0.972 59.0-165.2-124.7 120.9 -0.7 0.5 0.3 42 42 A R E -C 70 0A 83 28,-1.5 28,-2.1 -2,-0.5 2,-0.9 -0.865 5.6-165.3-107.8 101.7 -2.2 0.4 -3.2 43 43 A L E +C 69 0A 2 -2,-0.7 7,-2.7 7,-0.3 2,-0.8 -0.754 9.0 178.9 -89.8 103.4 -1.7 -2.9 -4.9 44 44 A I E > -CD 68 49A 41 24,-2.3 24,-0.8 -2,-0.9 3,-0.6 -0.738 5.8-175.3-107.2 83.5 -2.4 -2.5 -8.6 45 45 A F E > S- D 0 48A 26 3,-1.6 3,-2.1 -2,-0.8 22,-0.1 -0.688 76.2 -13.7 -82.8 121.1 -1.9 -5.9 -10.2 46 46 A A T 3 S- 0 0 83 -2,-0.5 -1,-0.2 20,-0.3 3,-0.1 0.620 132.1 -55.7 64.3 11.3 -2.2 -5.8 -14.0 47 47 A G T < S+ 0 0 61 -3,-0.6 2,-0.4 1,-0.4 -1,-0.3 0.145 116.8 111.0 107.4 -18.4 -3.7 -2.4 -13.5 48 48 A K E < -D 45 0A 96 -3,-2.1 -3,-1.6 -4,-0.0 2,-0.5 -0.733 65.5-129.6 -93.4 137.9 -6.5 -3.5 -11.1 49 49 A Q E -D 44 0A 81 -2,-0.4 -5,-0.2 -5,-0.3 2,-0.1 -0.740 22.6-123.6 -89.4 127.6 -6.4 -2.5 -7.5 50 50 A L - 0 0 8 -7,-2.7 2,-0.5 -2,-0.5 -7,-0.3 -0.439 21.9-132.5 -70.0 139.1 -6.9 -5.3 -4.9 51 51 A E > - 0 0 74 -2,-0.1 3,-2.1 1,-0.0 2,-0.7 -0.811 22.6-111.3 -97.6 130.5 -9.7 -4.8 -2.5 52 52 A D T 3 S+ 0 0 79 -2,-0.5 3,-0.1 1,-0.3 -1,-0.0 -0.420 106.9 36.7 -61.0 104.0 -9.1 -5.4 1.2 53 53 A G T 3 S+ 0 0 47 -2,-0.7 2,-0.3 1,-0.5 -1,-0.3 0.263 90.1 108.0 135.4 -8.5 -11.1 -8.6 1.9 54 54 A R < - 0 0 135 -3,-2.1 -31,-2.9 2,-0.0 -1,-0.5 -0.693 65.9-118.5 -99.5 152.4 -10.6 -10.6 -1.3 55 55 A T B > -E 22 0B 30 -33,-0.3 3,-3.1 -2,-0.3 4,-0.4 -0.645 20.6-120.6 -90.1 145.6 -8.4 -13.7 -1.6 56 56 A L G >>>S+ 0 0 1 -35,-1.9 3,-1.4 -38,-0.4 5,-1.4 0.836 117.7 57.2 -50.1 -35.5 -5.4 -13.8 -4.0 57 57 A S G 345S+ 0 0 84 -38,-2.4 -1,-0.3 -36,-0.3 -37,-0.1 0.620 95.4 66.4 -72.2 -12.4 -7.2 -16.7 -5.7 58 58 A D G <45S+ 0 0 98 -3,-3.1 -1,-0.3 -39,-0.2 -2,-0.2 0.514 113.0 29.2 -85.5 -6.0 -10.2 -14.3 -6.3 59 59 A Y T <45S- 0 0 52 -3,-1.4 -2,-0.2 -4,-0.4 -3,-0.1 0.692 114.6 -87.5-113.6 -78.9 -8.0 -12.2 -8.6 60 60 A N T <5 + 0 0 70 -4,-1.1 2,-0.6 2,-0.0 -3,-0.2 0.270 55.8 162.3 163.4 41.4 -5.3 -14.1 -10.5 61 61 A L < - 0 0 21 -5,-1.4 2,-0.1 -42,-0.1 -2,-0.1 -0.702 17.7-168.8 -84.0 119.9 -2.1 -14.2 -8.5 62 62 A Q - 0 0 144 -2,-0.6 3,-0.4 1,-0.1 2,-0.4 -0.433 40.7 -62.7 -99.9 176.5 0.3 -16.8 -9.7 63 63 A K S S- 0 0 156 1,-0.2 -60,-0.2 -2,-0.1 -1,-0.1 -0.444 119.7 -2.9 -63.3 117.6 3.5 -18.2 -8.2 64 64 A E S S+ 0 0 109 -62,-2.9 -61,-0.2 -2,-0.4 -1,-0.2 0.997 91.7 168.5 62.0 76.8 6.0 -15.4 -7.9 65 65 A S - 0 0 10 -3,-0.4 -61,-1.9 -63,-0.4 2,-0.4 -0.438 30.9-114.7-108.8-175.5 4.1 -12.5 -9.4 66 66 A T E +b 4 0A 65 -2,-0.1 2,-0.4 -63,-0.1 -20,-0.3 -0.987 27.8 177.7-128.9 133.0 4.6 -8.7 -9.6 67 67 A I E -b 5 0A 7 -63,-0.8 -61,-2.3 -2,-0.4 2,-0.7 -0.997 27.0-129.3-136.6 138.9 2.5 -6.0 -8.1 68 68 A H E -bC 6 44A 102 -24,-0.8 -24,-2.3 -2,-0.4 2,-0.8 -0.772 20.9-162.3 -90.2 112.6 2.9 -2.2 -8.1 69 69 A L E + C 0 43A 13 -63,-3.4 2,-0.4 -2,-0.7 -26,-0.2 -0.830 15.2 175.6 -99.1 105.6 2.5 -0.8 -4.5 70 70 A V E - C 0 42A 39 -28,-2.1 -28,-1.5 -2,-0.8 3,-0.1 -0.875 33.0-108.1-112.2 142.9 1.8 2.9 -4.6 71 71 A L - 0 0 82 -2,-0.4 -30,-0.2 -30,-0.2 -31,-0.1 -0.333 51.3 -82.8 -66.1 146.2 1.0 5.2 -1.6 72 72 A R - 0 0 110 -32,-0.2 2,-0.4 -33,-0.1 -1,-0.2 -0.283 49.8-144.4 -52.5 119.1 -2.6 6.4 -1.3 73 73 A L > - 0 0 91 1,-0.1 3,-0.8 -3,-0.1 -1,-0.1 -0.722 28.9 -88.6 -92.3 137.9 -2.9 9.4 -3.5 74 74 A R T 3 S+ 0 0 227 -2,-0.4 2,-0.3 1,-0.2 -1,-0.1 0.080 101.5 60.2 -37.7 150.5 -5.1 12.4 -2.5 75 75 A G T 3 0 0 90 -3,-0.1 -1,-0.2 0, 0.0 -3,-0.0 -0.573 360.0 360.0 127.1 -70.7 -8.7 12.1 -3.5 76 76 A G < 0 0 121 -3,-0.8 -3,-0.1 -2,-0.3 -2,-0.0 -0.403 360.0 360.0 158.9 360.0 -10.2 9.0 -2.0