==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 25-OCT-05 2C55 . COMPND 2 MOLECULE: PROTEIN P6; . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.FOSSEN,V.WRAY,K.BRUNS,J.RACHMAT,P.HENKLEIN,U.TESSMER, . 52 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6142.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 17 32.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A L 0 0 217 0, 0.0 2,-1.8 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 150.0 3.8 1.0 18.3 2 2 A Q + 0 0 203 2,-0.0 2,-0.1 0, 0.0 0, 0.0 -0.556 360.0 141.4 -85.0 75.9 6.5 -1.6 19.1 3 3 A S - 0 0 95 -2,-1.8 0, 0.0 0, 0.0 0, 0.0 -0.279 52.4-102.0-103.1-169.3 7.1 -2.8 15.6 4 4 A R - 0 0 220 -2,-0.1 2,-0.5 0, 0.0 -2,-0.0 -0.976 23.8-140.9-124.1 122.9 10.2 -3.9 13.7 5 5 A P - 0 0 102 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.708 17.5-179.9 -85.6 121.5 12.0 -1.6 11.2 6 6 A E + 0 0 185 -2,-0.5 2,-0.1 2,-0.0 0, 0.0 0.930 66.5 45.4 -83.0 -51.8 13.4 -3.4 8.1 7 7 A P S S- 0 0 80 0, 0.0 2,-0.4 0, 0.0 0, 0.0 -0.278 76.2-132.2 -86.9 174.8 14.9 -0.4 6.2 8 8 A T + 0 0 128 1,-0.3 -2,-0.0 -2,-0.1 0, 0.0 -0.995 63.9 5.0-134.5 137.9 17.2 2.4 7.5 9 9 A A S S- 0 0 75 -2,-0.4 -1,-0.3 1,-0.1 0, 0.0 0.628 116.8 -37.7 63.3 132.6 17.0 6.1 7.0 10 10 A P - 0 0 135 0, 0.0 2,-1.0 0, 0.0 -1,-0.1 0.186 65.3-174.6 -21.7 87.6 14.1 7.7 5.1 11 11 A P + 0 0 70 0, 0.0 3,-0.5 0, 0.0 4,-0.1 -0.439 37.5 128.4 -93.3 58.5 13.6 5.0 2.4 12 12 A E + 0 0 121 -2,-1.0 -3,-0.0 1,-0.2 0, 0.0 -0.114 47.5 87.3-104.9 35.5 11.0 6.8 0.4 13 13 A E S S+ 0 0 138 2,-0.1 -1,-0.2 1,-0.1 3,-0.1 0.509 81.8 58.7-106.8 -9.8 12.8 6.4 -2.9 14 14 A S S >> S+ 0 0 89 -3,-0.5 4,-0.7 1,-0.2 3,-0.7 0.572 96.5 63.0 -90.4 -14.9 11.3 3.0 -3.5 15 15 A F T 34 S+ 0 0 124 1,-0.3 4,-0.3 2,-0.2 -1,-0.2 0.529 94.5 61.2 -87.3 -6.9 7.9 4.6 -3.4 16 16 A R T 34 S+ 0 0 161 2,-0.1 -1,-0.3 1,-0.1 -2,-0.1 -0.182 98.0 62.9-108.8 34.5 9.0 6.6 -6.4 17 17 A F T X4 S+ 0 0 142 -3,-0.7 3,-1.2 4,-0.0 -2,-0.2 0.601 96.5 48.9-124.1 -44.8 9.3 3.3 -8.2 18 18 A G G >< S+ 0 0 26 -4,-0.7 3,-1.6 1,-0.3 5,-0.2 0.689 98.2 70.9 -75.4 -16.0 5.8 2.0 -8.2 19 19 A E G 3 S+ 0 0 140 -4,-0.3 -1,-0.3 1,-0.3 4,-0.2 0.524 94.1 58.0 -75.5 -3.0 4.5 5.3 -9.4 20 20 A E G < S+ 0 0 170 -3,-1.2 -1,-0.3 1,-0.1 -2,-0.2 0.158 77.2 95.6-108.6 13.3 6.2 4.3 -12.6 21 21 A T S < S- 0 0 85 -3,-1.6 -1,-0.1 1,-0.0 -2,-0.1 -0.205 109.8 -98.0 -97.7 40.5 4.1 1.2 -13.0 22 22 A T S S+ 0 0 132 -3,-0.1 -2,-0.1 1,-0.1 -3,-0.1 0.862 79.3 144.2 45.1 43.8 1.6 2.8 -15.3 23 23 A T + 0 0 40 -5,-0.2 2,-0.4 -4,-0.2 -1,-0.1 0.968 50.1 64.2 -74.3 -57.0 -0.7 3.3 -12.2 24 24 A P S S- 0 0 79 0, 0.0 2,-0.3 0, 0.0 5,-0.1 -0.565 73.3-158.9 -74.6 125.2 -2.3 6.7 -13.1 25 25 A S - 0 0 78 -2,-0.4 2,-0.2 3,-0.2 6,-0.1 -0.745 31.6 -87.1-104.9 152.8 -4.4 6.6 -16.2 26 26 A Q S S- 0 0 173 -2,-0.3 -1,-0.1 3,-0.1 3,-0.0 -0.364 95.2 -17.0 -58.9 123.2 -5.4 9.5 -18.5 27 27 A K S S+ 0 0 148 -2,-0.2 -2,-0.1 2,-0.0 0, 0.0 0.325 113.8 45.0 59.9 160.7 -8.6 11.1 -17.1 28 28 A Q S S- 0 0 177 1,-0.1 -3,-0.2 2,-0.1 -1,-0.0 0.183 91.9 -87.7 58.5 173.4 -10.9 9.3 -14.6 29 29 A E + 0 0 136 1,-0.1 3,-0.2 -5,-0.1 -1,-0.1 -0.873 44.5 165.6-123.8 98.3 -9.6 7.5 -11.5 30 30 A P + 0 0 61 0, 0.0 4,-0.5 0, 0.0 3,-0.3 0.043 62.3 89.3 -97.7 24.5 -8.7 3.8 -12.1 31 31 A I + 0 0 41 1,-0.2 -8,-0.0 2,-0.1 -3,-0.0 -0.213 68.5 74.8-113.2 38.2 -6.8 3.7 -8.9 32 32 A D S S+ 0 0 78 -3,-0.2 -1,-0.2 4,-0.0 -3,-0.0 -0.095 95.0 46.8-140.5 33.4 -9.9 2.7 -6.9 33 33 A K S S+ 0 0 167 -3,-0.3 3,-0.4 3,-0.1 -2,-0.1 0.444 122.4 28.4-135.0 -54.5 -10.0 -0.9 -8.0 34 34 A E S S+ 0 0 153 -4,-0.5 -3,-0.1 1,-0.2 -2,-0.0 0.442 131.5 39.4 -94.5 -2.7 -6.5 -2.1 -7.7 35 35 A L S S+ 0 0 69 3,-0.1 -1,-0.2 2,-0.1 4,-0.1 -0.128 106.5 65.8-137.2 35.0 -5.6 0.3 -4.9 36 36 A Y S > S+ 0 0 138 -3,-0.4 4,-2.1 2,-0.1 5,-0.2 0.650 89.7 55.7-123.0 -44.6 -8.8 0.1 -3.0 37 37 A P T 4 S+ 0 0 71 0, 0.0 4,-0.3 0, 0.0 -3,-0.1 0.735 106.2 63.7 -64.3 -16.1 -9.1 -3.4 -1.6 38 38 A L T >> S+ 0 0 78 2,-0.3 3,-1.0 1,-0.2 4,-0.6 0.966 100.6 43.9 -68.0 -57.1 -5.8 -2.2 -0.3 39 39 A A G >4 S+ 0 0 67 1,-0.3 3,-0.6 2,-0.2 -1,-0.2 0.834 116.6 49.3 -57.7 -28.7 -7.3 0.4 1.7 40 40 A S G >X S+ 0 0 59 -4,-2.1 4,-2.4 1,-0.2 3,-1.5 0.655 97.6 69.2 -79.8 -21.5 -9.7 -2.2 2.6 41 41 A L G <4 S+ 0 0 79 -3,-1.0 -2,-0.2 -4,-0.3 -1,-0.2 0.610 95.6 54.1 -73.9 -13.3 -6.8 -4.4 3.3 42 42 A R G << S+ 0 0 171 -4,-0.6 -1,-0.3 -3,-0.6 -2,-0.2 0.157 109.4 50.5-105.0 14.1 -6.2 -2.1 6.3 43 43 A S T X4 S+ 0 0 83 -3,-1.5 3,-1.9 -5,-0.2 -2,-0.2 0.705 109.0 43.6-112.6 -54.6 -9.7 -2.8 7.4 44 44 A L G >< S+ 0 0 116 -4,-2.4 3,-0.7 1,-0.3 -3,-0.1 0.627 96.0 83.4 -70.1 -10.3 -9.9 -6.5 7.3 45 45 A F G 3 S+ 0 0 130 1,-0.3 3,-0.4 -5,-0.3 2,-0.4 0.731 77.8 69.6 -63.8 -21.9 -6.5 -6.4 8.9 46 46 A G G < S+ 0 0 64 -3,-1.9 -1,-0.3 1,-0.2 -2,-0.1 -0.180 84.1 72.5 -91.7 42.8 -8.4 -6.0 12.1 47 47 A S < + 0 0 83 -3,-0.7 -1,-0.2 -2,-0.4 -2,-0.1 -0.112 57.4 122.5-145.8 39.1 -9.7 -9.5 12.1 48 48 A D - 0 0 151 -3,-0.4 2,-0.6 2,-0.0 -3,-0.0 -0.834 50.2-150.3-109.4 94.9 -6.6 -11.7 12.9 49 49 A P - 0 0 106 0, 0.0 2,-1.7 0, 0.0 -2,-0.0 -0.504 18.7-128.6 -67.7 111.8 -7.3 -13.8 16.1 50 50 A S + 0 0 136 -2,-0.6 2,-0.4 1,-0.1 -2,-0.0 -0.418 53.5 146.1 -63.6 88.4 -4.0 -14.3 17.8 51 51 A S 0 0 106 -2,-1.7 -1,-0.1 1,-0.1 0, 0.0 -0.756 360.0 360.0-131.7 86.5 -4.2 -18.1 18.1 52 52 A Q 0 0 266 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.0 0.731 360.0 360.0 -98.5 360.0 -0.8 -19.8 17.8