==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 27-OCT-05 2C5I . COMPND 2 MOLECULE: T-SNARE AFFECTING A LATE GOLGI COMPARTMENT . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR Y.FRIDMANN-SIRKIS,H.M.KENT,M.J.LEWIS,P.R.EVANS,H.R.B.PELHAM . 117 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8110.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 92 78.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 78 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 8 P K 0 0 262 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 143.8 43.9 5.7 6.1 2 9 P K - 0 0 87 0, 0.0 2,-0.5 0, 0.0 0, 0.0 -0.965 360.0-153.3-159.9 130.8 41.3 7.2 8.5 3 10 P S + 0 0 109 -2,-0.3 53,-0.0 1,-0.1 0, 0.0 -0.846 19.1 165.7-129.5 105.3 37.6 8.2 8.1 4 11 P L + 0 0 8 -2,-0.5 2,-0.1 2,-0.1 -1,-0.1 0.602 43.3 104.5 -92.7 -16.3 35.7 10.9 10.0 5 12 P R - 0 0 108 1,-0.1 2,-0.3 35,-0.1 -2,-0.0 -0.455 67.4-124.3 -80.5 143.0 32.4 11.5 8.2 6 13 P V > - 0 0 19 -2,-0.1 3,-0.8 27,-0.1 4,-0.3 -0.675 23.5-120.0 -87.5 135.4 29.1 10.0 9.6 7 14 P S T 3 S+ 0 0 96 -2,-0.3 -1,-0.0 1,-0.2 0, 0.0 -0.554 92.5 17.7 -77.3 138.4 27.0 7.7 7.5 8 15 P S T 3> S+ 0 0 69 -2,-0.2 4,-3.0 1,-0.0 5,-0.2 0.200 89.5 112.5 89.0 -5.1 23.4 8.8 6.7 9 16 P L H <> S+ 0 0 18 -3,-0.8 4,-2.0 2,-0.2 -2,-0.1 0.851 77.2 45.1 -70.0 -41.4 24.0 12.5 7.6 10 17 P N H > S+ 0 0 102 -4,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.913 115.2 50.3 -63.1 -44.3 23.6 13.9 4.1 11 18 P K H > S+ 0 0 120 2,-0.2 4,-1.9 1,-0.2 -2,-0.2 0.941 111.4 47.0 -62.5 -44.8 20.5 11.8 3.6 12 19 P D H X S+ 0 0 16 -4,-3.0 4,-2.1 1,-0.2 5,-0.2 0.916 109.6 54.6 -63.5 -37.6 18.9 12.9 6.9 13 20 P R H X S+ 0 0 36 -4,-2.0 4,-2.4 -5,-0.2 -1,-0.2 0.918 106.3 51.9 -60.3 -40.9 19.7 16.5 6.1 14 21 P R H X S+ 0 0 126 -4,-2.2 4,-2.5 2,-0.2 -1,-0.2 0.907 107.9 51.6 -64.6 -40.0 17.8 16.1 2.7 15 22 P L H X S+ 0 0 71 -4,-1.9 4,-1.5 2,-0.2 -1,-0.2 0.916 111.1 47.4 -58.9 -45.1 14.7 14.7 4.6 16 23 P L H < S+ 0 0 7 -4,-2.1 4,-0.3 10,-0.2 3,-0.2 0.929 113.2 49.3 -62.9 -42.8 14.7 17.6 7.0 17 24 P L H >< S+ 0 0 83 -4,-2.4 3,-1.2 -5,-0.2 -2,-0.2 0.887 107.3 53.7 -63.7 -40.8 15.1 20.0 4.0 18 25 P R H >X S+ 0 0 161 -4,-2.5 3,-0.6 1,-0.2 4,-0.5 0.777 103.3 58.8 -64.1 -29.7 12.3 18.3 2.0 19 26 P E T 3< S+ 0 0 98 -4,-1.5 -1,-0.2 -3,-0.2 -2,-0.2 0.577 81.1 93.2 -70.0 -10.3 9.9 18.9 5.0 20 27 P F T <4 S+ 0 0 63 -3,-1.2 -1,-0.2 -4,-0.3 -2,-0.1 0.726 91.4 33.0 -67.1 -25.2 10.4 22.6 4.9 21 28 P Y T <4 S+ 0 0 197 -3,-0.6 -1,-0.2 -4,-0.2 -2,-0.1 0.853 81.7 124.7 -98.9 -38.5 7.5 23.5 2.7 22 29 P N < 0 0 106 -4,-0.5 -3,-0.0 1,-0.1 -4,-0.0 0.065 360.0 360.0 -21.5 82.0 5.1 20.8 3.9 23 30 P L 0 0 189 61,-0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.407 360.0 360.0-147.4 360.0 2.0 22.9 5.0 24 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 25 6 T D > 0 0 110 0, 0.0 4,-0.9 0, 0.0 -9,-0.1 0.000 360.0 360.0 360.0 128.7 11.1 12.6 12.9 26 7 T P H > + 0 0 30 0, 0.0 4,-1.7 0, 0.0 -10,-0.2 0.852 360.0 54.2 -78.6 -32.3 13.7 14.1 10.5 27 8 T F H >> S+ 0 0 2 1,-0.2 4,-2.7 2,-0.2 3,-0.5 0.969 108.0 48.9 -64.2 -52.9 14.8 17.0 12.8 28 9 T Q H 3> S+ 0 0 73 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.807 109.2 55.8 -56.1 -29.4 15.6 14.7 15.7 29 10 T Q H 3X S+ 0 0 72 -4,-0.9 4,-1.9 2,-0.2 -1,-0.2 0.872 108.9 44.2 -70.3 -40.2 17.6 12.6 13.3 30 11 T V H < S+ 0 0 77 -4,-1.7 3,-0.6 1,-0.2 -1,-0.2 0.905 113.7 41.4 -65.5 -38.7 42.0 13.6 21.4 47 28 T R H 3< S+ 0 0 202 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.740 121.0 40.5 -78.9 -24.7 43.8 10.7 19.8 48 29 T H T 3< + 0 0 50 -4,-2.3 4,-0.3 -5,-0.1 -1,-0.2 -0.398 64.4 167.0-125.0 55.2 46.0 12.8 17.4 49 30 T N < + 0 0 112 -3,-0.6 2,-0.4 2,-0.1 -1,-0.1 0.642 54.0 95.2 -28.2 -31.8 47.0 15.8 19.6 50 31 T T S S- 0 0 96 -3,-0.1 2,-2.2 1,-0.1 3,-0.2 -0.646 79.5-135.7 -82.9 126.4 49.5 16.7 16.9 51 32 T A + 0 0 14 -2,-0.4 -1,-0.1 62,-0.3 -2,-0.1 -0.328 67.1 113.4 -81.6 58.1 48.2 19.2 14.4 52 33 T G + 0 0 31 -2,-2.2 -1,-0.1 -4,-0.3 5,-0.1 0.903 26.1 82.0 -98.5 -97.0 49.6 17.3 11.4 53 34 T D > - 0 0 70 -3,-0.2 4,-2.5 1,-0.2 5,-0.1 0.137 52.0-159.8 -23.8 103.9 47.8 15.5 8.5 54 35 T D H > S+ 0 0 125 2,-0.2 4,-1.8 3,-0.2 -1,-0.2 0.843 92.1 59.4 -59.3 -35.1 47.0 18.4 6.1 55 36 T D H >> S+ 0 0 116 2,-0.2 4,-2.8 1,-0.2 3,-1.0 0.992 110.2 37.2 -50.7 -68.6 44.4 16.0 4.7 56 37 T Q H 3> S+ 0 0 16 1,-0.3 4,-3.8 2,-0.2 5,-0.3 0.838 111.9 59.6 -64.9 -33.1 42.5 15.6 8.0 57 38 T E H 3X S+ 0 0 62 -4,-2.5 4,-1.4 2,-0.2 -1,-0.3 0.894 112.3 40.4 -55.5 -40.2 43.0 19.2 8.8 58 39 T E H < S+ 0 0 101 -4,-1.7 3,-1.1 1,-0.2 -2,-0.2 0.945 112.7 42.1 -67.1 -47.8 11.2 29.3 12.4 80 61 T V H 3< S+ 0 0 46 -4,-2.1 3,-0.3 1,-0.2 -1,-0.2 0.640 112.9 57.0 -70.5 -14.2 8.9 28.1 9.6 81 62 T X T >< S+ 0 0 33 -4,-1.0 3,-1.1 -5,-0.2 -1,-0.2 0.379 73.5 100.8 -96.9 -0.7 7.4 25.6 12.1 82 63 T K T < S+ 0 0 136 -3,-1.1 -1,-0.2 -4,-0.3 -2,-0.1 0.734 79.9 53.8 -59.6 -27.5 6.3 28.1 14.7 83 64 T R T 3 S+ 0 0 168 -3,-0.3 2,-0.4 -4,-0.2 -1,-0.2 0.763 81.1 109.7 -75.5 -21.8 2.7 28.0 13.5 84 65 T D < - 0 0 53 -3,-1.1 -3,-0.0 1,-0.2 -61,-0.0 -0.359 64.2-148.3 -70.1 113.6 2.5 24.2 13.8 85 66 T E S S+ 0 0 197 -2,-0.4 -1,-0.2 1,-0.2 -3,-0.0 0.684 90.3 42.0 -65.2 -20.7 0.2 23.6 16.8 86 67 T N S S+ 0 0 150 2,-0.0 -1,-0.2 0, 0.0 -2,-0.0 0.960 86.2 108.0 -76.8 -57.3 2.0 20.4 17.9 87 68 T E - 0 0 18 1,-0.2 2,-1.5 -6,-0.1 4,-0.0 0.370 65.4-134.3 -45.7 140.2 5.7 21.2 17.5 88 69 T D > + 0 0 102 1,-0.2 4,-1.3 2,-0.1 5,-0.2 -0.553 33.0 169.0 -89.3 72.6 7.9 21.8 20.6 89 70 T V H >> S+ 0 0 28 -2,-1.5 4,-3.1 1,-0.2 3,-2.0 0.952 76.2 45.2 -48.0 -66.9 9.7 25.0 19.5 90 71 T S H 3> S+ 0 0 86 1,-0.3 4,-0.9 2,-0.2 -1,-0.2 0.794 114.2 50.1 -51.4 -37.1 11.3 25.8 22.9 91 72 T G H 3> S+ 0 0 28 2,-0.2 4,-0.5 1,-0.1 -1,-0.3 0.684 115.5 44.6 -70.9 -19.8 12.3 22.2 23.4 92 73 T R H < S+ 0 0 147 -4,-3.2 3,-0.7 1,-0.2 4,-0.3 0.930 110.9 53.2 -52.3 -49.2 44.1 26.0 20.3 113 94 T R H >< S+ 0 0 17 -4,-2.5 3,-1.6 -5,-0.3 -62,-0.3 0.858 101.1 58.0 -58.8 -44.6 45.5 22.7 18.8 114 95 T I H 3< S+ 0 0 75 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.832 100.2 58.5 -52.5 -37.0 46.7 24.5 15.6 115 96 T Q T << S+ 0 0 178 -4,-1.1 2,-0.3 -3,-0.7 -1,-0.2 0.547 90.3 87.8 -73.4 -6.7 48.9 26.9 17.8 116 97 T E S < S- 0 0 106 -3,-1.6 -65,-0.2 -4,-0.3 0, 0.0 -0.740 95.3 -87.0 -99.4 149.9 50.6 23.7 19.1 117 98 T S 0 0 111 -2,-0.3 -1,-0.1 -67,-0.1 -67,-0.0 0.763 360.0 360.0 -53.0 -95.6 53.5 22.8 16.9 118 99 T T 0 0 149 -3,-0.0 -66,-0.1 0, 0.0 -67,-0.1 -0.544 360.0 360.0 174.9 360.0 54.0 20.8 13.8