==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UBIQUITIN-LIKE PROTEIN 24-NOV-05 2C7H . COMPND 2 MOLECULE: RETINOBLASTOMA-BINDING PROTEIN 6, ISOFORM 3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR D.J.R.PUGH,E.AB,A.FARO,P.T.LUTYA,E.HOFFMANN,D.J.G.REES . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5273.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 74.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 7.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 25.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 17.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 83 0, 0.0 2,-0.5 0, 0.0 7,-0.1 0.000 360.0 360.0 360.0 175.9 -15.3 5.5 3.5 2 2 A P > - 0 0 82 0, 0.0 4,-0.6 0, 0.0 2,-0.4 -0.497 360.0-132.2 -63.7 114.7 -18.3 6.4 1.3 3 3 A L B 4 S+a 6 0A 176 -2,-0.5 2,-0.4 2,-0.1 4,-0.1 -0.567 75.2 46.2 -71.4 123.3 -20.4 3.3 1.0 4 4 A G T 4 S- 0 0 49 2,-0.5 -1,-0.1 -2,-0.4 0, 0.0 -0.914 119.7 -1.8 150.8-116.1 -21.3 2.7 -2.6 5 5 A S T 4 S+ 0 0 118 -2,-0.4 21,-0.4 20,-0.0 2,-0.3 0.412 109.2 94.6 -93.0 2.0 -19.1 2.9 -5.6 6 6 A M B < -a 3 0A 71 -4,-0.6 -2,-0.5 19,-0.1 2,-0.4 -0.659 55.4-164.3 -92.7 150.7 -16.1 3.9 -3.5 7 7 A S E -B 24 0B 1 17,-1.3 17,-3.1 -2,-0.3 2,-0.5 -0.988 10.4-171.8-136.6 120.2 -13.6 1.5 -2.2 8 8 A C E -B 23 0B 15 -2,-0.4 2,-0.5 15,-0.2 15,-0.2 -0.967 11.2-160.9-125.9 128.9 -11.4 2.6 0.5 9 9 A V E -B 22 0B 0 13,-1.9 13,-1.7 -2,-0.5 2,-0.9 -0.944 15.6-141.8-108.1 124.7 -8.4 0.9 2.0 10 10 A H E +B 21 0B 78 -2,-0.5 65,-1.6 61,-0.3 2,-0.5 -0.785 30.9 173.6 -81.3 106.0 -7.2 2.0 5.4 11 11 A Y E -Bc 20 75B 0 9,-2.3 9,-3.6 -2,-0.9 2,-0.5 -0.975 17.1-159.4-118.6 126.0 -3.5 1.8 5.1 12 12 A K E -Bc 19 76B 51 63,-2.2 65,-3.5 -2,-0.5 2,-0.2 -0.915 14.1-138.2-105.1 133.1 -1.3 3.0 7.8 13 13 A F E > - c 0 77B 10 5,-0.6 3,-1.2 -2,-0.5 65,-0.2 -0.612 17.5-125.7 -82.9 150.5 2.2 3.8 6.9 14 14 A S T 3 S+ 0 0 64 63,-2.6 -1,-0.1 1,-0.3 64,-0.1 0.784 116.1 55.3 -64.4 -24.8 4.9 2.8 9.3 15 15 A S T 3 S+ 0 0 99 62,-0.3 2,-0.3 2,-0.0 -1,-0.3 0.621 102.6 74.1 -80.5 -15.6 5.9 6.4 9.3 16 16 A K < - 0 0 48 -3,-1.2 4,-0.0 2,-0.1 -4,-0.0 -0.708 66.6-149.6-104.4 157.8 2.4 7.5 10.3 17 17 A L S S+ 0 0 175 -2,-0.3 2,-0.3 2,-0.1 -1,-0.1 0.341 84.6 44.5 -96.7 1.2 0.5 7.2 13.6 18 18 A N S S- 0 0 92 -5,-0.2 -5,-0.6 -7,-0.1 2,-0.4 -0.874 88.9 -94.8-145.6 164.9 -2.7 6.9 11.7 19 19 A Y E -B 12 0B 111 -2,-0.3 -7,-0.3 -7,-0.2 2,-0.2 -0.736 33.2-160.2 -91.8 139.4 -4.4 5.1 8.9 20 20 A D E -B 11 0B 26 -9,-3.6 -9,-2.3 -2,-0.4 2,-0.4 -0.519 13.2-127.4-108.2 177.6 -4.6 6.8 5.6 21 21 A T E -B 10 0B 54 -11,-0.2 2,-0.5 -2,-0.2 -11,-0.2 -0.951 12.0-161.8-144.3 120.8 -7.0 6.0 2.8 22 22 A V E -B 9 0B 0 -13,-1.7 -13,-1.9 -2,-0.4 2,-0.7 -0.858 16.3-152.1 -95.2 126.8 -6.8 5.1 -0.9 23 23 A T E +B 8 0B 73 -2,-0.5 2,-0.3 -15,-0.2 -15,-0.2 -0.912 29.7 158.9 -98.9 118.2 -10.0 5.5 -2.7 24 24 A F E -B 7 0B 9 -17,-3.1 -17,-1.3 -2,-0.7 2,-0.3 -0.784 36.6-107.2-131.5 175.6 -10.2 3.3 -5.6 25 25 A D S S+ 0 0 133 -2,-0.3 2,-0.7 -19,-0.1 3,-0.1 -0.779 80.7 25.2-107.8 150.3 -12.7 1.7 -7.8 26 26 A G S S- 0 0 60 -21,-0.4 3,-0.1 -2,-0.3 -2,-0.0 -0.895 102.7 -76.0 108.4-114.7 -13.8 -1.9 -7.9 27 27 A L S S+ 0 0 78 -2,-0.7 44,-2.9 1,-0.5 2,-0.3 0.293 106.6 30.0-152.6 -41.1 -13.4 -3.8 -4.8 28 28 A H E -F 70 0C 99 42,-0.3 -1,-0.5 -3,-0.1 2,-0.5 -0.945 64.4-140.9-133.5 152.6 -9.7 -4.6 -4.6 29 29 A I E -F 69 0C 8 40,-3.0 40,-3.4 -2,-0.3 2,-0.1 -0.946 22.1-122.0-117.9 127.3 -6.6 -2.9 -5.8 30 30 A S E >> -F 68 0C 63 -2,-0.5 4,-2.8 38,-0.3 3,-0.5 -0.457 27.5-120.0 -63.1 140.3 -3.6 -4.7 -7.2 31 31 A L H 3> S+ 0 0 0 36,-3.6 4,-3.3 1,-0.2 5,-0.3 0.805 111.4 60.5 -54.6 -39.2 -0.4 -4.0 -5.2 32 32 A C H 3> S+ 0 0 53 33,-2.8 4,-2.6 2,-0.2 -1,-0.2 0.960 112.8 37.4 -54.4 -46.9 1.3 -2.5 -8.2 33 33 A D H <> S+ 0 0 85 -3,-0.5 4,-2.6 32,-0.3 -2,-0.2 0.899 114.8 55.9 -74.9 -36.9 -1.4 0.2 -8.4 34 34 A L H X S+ 0 0 0 -4,-2.8 4,-2.1 2,-0.2 -2,-0.2 0.933 114.3 38.9 -58.9 -47.3 -1.6 0.4 -4.6 35 35 A K H X S+ 0 0 0 -4,-3.3 4,-3.4 1,-0.2 5,-0.3 0.936 113.9 53.8 -71.7 -44.9 2.1 1.1 -4.3 36 36 A K H X S+ 0 0 106 -4,-2.6 4,-1.5 -5,-0.3 -2,-0.2 0.840 110.7 47.4 -61.4 -35.2 2.2 3.3 -7.4 37 37 A Q H X S+ 0 0 64 -4,-2.6 4,-1.9 2,-0.2 -1,-0.2 0.968 116.3 43.5 -67.4 -49.7 -0.6 5.5 -6.0 38 38 A I H X S+ 0 0 0 -4,-2.1 4,-3.3 -5,-0.2 5,-0.4 0.886 110.5 54.7 -65.0 -42.3 0.9 5.8 -2.5 39 39 A M H X>S+ 0 0 18 -4,-3.4 5,-2.6 1,-0.2 4,-1.3 0.921 115.2 39.2 -59.8 -44.9 4.5 6.4 -3.8 40 40 A G H <5S+ 0 0 52 -4,-1.5 -1,-0.2 -5,-0.3 -2,-0.2 0.801 117.4 52.5 -73.1 -31.0 3.3 9.4 -5.9 41 41 A R H <5S+ 0 0 110 -4,-1.9 -2,-0.2 -5,-0.2 -3,-0.2 0.954 121.4 26.7 -69.3 -51.3 1.0 10.5 -3.2 42 42 A E H <5S- 0 0 66 -4,-3.3 -2,-0.2 -5,-0.1 -3,-0.2 0.603 112.9-110.4 -93.0 -14.2 3.4 10.6 -0.3 43 43 A K T <5 + 0 0 165 -4,-1.3 2,-0.3 -5,-0.4 -3,-0.2 0.966 49.5 175.6 77.7 72.3 6.5 11.2 -2.3 44 44 A L < - 0 0 33 -5,-2.6 2,-1.0 -6,-0.1 -1,-0.1 -0.780 35.8-117.7-101.0 153.8 8.5 8.0 -2.1 45 45 A K >> + 0 0 113 -2,-0.3 4,-2.7 1,-0.2 3,-0.8 -0.796 30.1 177.4 -93.0 101.9 11.6 7.3 -3.9 46 46 A A T 34 S+ 0 0 54 -2,-1.0 -1,-0.2 1,-0.2 5,-0.0 0.611 78.0 67.3 -80.0 -12.6 10.8 4.4 -6.1 47 47 A A T 34 S+ 0 0 97 1,-0.1 -1,-0.2 -3,-0.1 3,-0.1 0.634 118.0 22.9 -79.4 -15.7 14.3 4.6 -7.5 48 48 A D T <4 S+ 0 0 54 -3,-0.8 34,-2.2 1,-0.2 35,-0.3 0.643 126.8 37.4-117.3 -31.3 15.6 3.5 -4.1 49 49 A C E < -D 81 0B 5 -4,-2.7 2,-0.3 32,-0.3 -1,-0.2 -0.767 52.5-154.1-129.2 165.2 12.7 1.8 -2.6 50 50 A D E -D 80 0B 33 30,-3.7 30,-2.4 -2,-0.3 2,-0.6 -0.768 33.9-111.4-123.1 169.7 9.8 -0.5 -3.1 51 51 A L E -D 79 0B 0 -2,-0.3 2,-0.6 28,-0.2 28,-0.2 -0.932 25.9-161.8-115.3 120.1 6.7 -0.5 -1.0 52 52 A Q E -D 78 0B 17 26,-3.1 26,-3.2 -2,-0.6 2,-0.4 -0.899 8.9-164.9-106.5 123.4 6.1 -3.5 1.2 53 53 A I E -DE 77 62B 0 9,-0.8 9,-3.3 -2,-0.6 2,-0.4 -0.866 8.1-174.7-114.3 135.4 2.6 -4.0 2.4 54 54 A T E -DE 76 61B 18 22,-2.8 22,-4.0 -2,-0.4 7,-0.3 -0.989 29.7-115.6-125.9 140.8 1.5 -6.2 5.2 55 55 A N E -D 75 0B 1 5,-3.4 4,-0.3 -2,-0.4 20,-0.3 -0.547 14.6-155.8 -72.5 138.2 -2.1 -6.8 6.2 56 56 A A S S+ 0 0 33 18,-2.3 19,-0.2 -2,-0.2 -1,-0.1 0.669 92.2 41.6 -87.3 -16.6 -3.0 -5.6 9.7 57 57 A Q S S+ 0 0 109 17,-0.7 -1,-0.1 3,-0.1 18,-0.1 0.855 131.8 19.3 -99.2 -44.5 -5.9 -8.0 10.0 58 58 A T S S- 0 0 90 2,-0.1 -2,-0.1 0, 0.0 3,-0.1 0.624 93.2-133.5-100.4 -19.1 -4.6 -11.3 8.5 59 59 A K + 0 0 144 -4,-0.3 2,-0.2 1,-0.3 -3,-0.1 0.512 51.8 153.7 72.0 12.5 -0.9 -10.3 8.8 60 60 A E - 0 0 123 -6,-0.1 -5,-3.4 1,-0.1 2,-0.3 -0.470 38.4-135.2 -72.1 135.4 -0.4 -11.5 5.2 61 61 A E E -E 54 0B 83 -7,-0.3 2,-0.9 -2,-0.2 -7,-0.3 -0.704 3.5-138.5 -92.9 145.3 2.4 -9.8 3.4 62 62 A Y E +E 53 0B 22 -9,-3.3 -9,-0.8 -2,-0.3 7,-0.0 -0.863 33.8 161.1-105.2 98.0 2.1 -8.6 -0.1 63 63 A T + 0 0 107 -2,-0.9 2,-0.3 -11,-0.1 -1,-0.2 0.860 54.7 55.1 -90.6 -37.7 5.3 -9.6 -1.8 64 64 A D S > S- 0 0 90 1,-0.1 3,-2.2 4,-0.0 -33,-0.2 -0.739 79.5-124.8-101.2 150.6 4.4 -9.4 -5.5 65 65 A D T 3 S+ 0 0 44 -2,-0.3 -33,-2.8 1,-0.3 -32,-0.3 0.656 111.3 63.7 -64.3 -15.2 2.9 -6.4 -7.4 66 66 A N T 3 S+ 0 0 112 -35,-0.2 -1,-0.3 -36,-0.2 -4,-0.0 0.590 77.1 114.1 -83.1 -11.2 0.1 -8.7 -8.5 67 67 A A < - 0 0 19 -3,-2.2 -36,-3.6 -37,-0.1 2,-0.4 -0.303 61.9-139.6 -62.2 141.2 -1.0 -9.1 -4.9 68 68 A L E -F 30 0C 78 -38,-0.3 -38,-0.3 -37,-0.1 -1,-0.1 -0.885 15.0-160.9-117.2 137.7 -4.3 -7.6 -4.3 69 69 A I E -F 29 0C 0 -40,-3.4 -40,-3.0 -2,-0.4 2,-0.2 -0.954 14.5-153.8-115.3 112.5 -5.7 -5.6 -1.4 70 70 A P E > -F 28 0C 25 0, 0.0 3,-2.4 0, 0.0 -42,-0.3 -0.499 30.6-110.2 -78.0 156.6 -9.5 -5.3 -1.1 71 71 A K T 3 S+ 0 0 70 -44,-2.9 -61,-0.3 1,-0.3 -43,-0.1 0.682 117.4 67.2 -58.2 -17.5 -11.3 -2.4 0.6 72 72 A N T 3 S+ 0 0 118 -45,-0.3 2,-0.6 -63,-0.1 -1,-0.3 0.450 89.9 80.1 -82.7 -2.0 -12.2 -4.9 3.4 73 73 A S < - 0 0 16 -3,-2.4 2,-0.6 -65,-0.1 -63,-0.2 -0.937 63.9-159.0-115.5 118.6 -8.5 -5.1 4.3 74 74 A S - 0 0 29 -2,-0.6 -18,-2.3 -65,-0.2 -17,-0.7 -0.879 27.3-171.7 -89.8 123.2 -6.8 -2.5 6.4 75 75 A V E -cD 11 55B 0 -65,-1.6 -63,-2.2 -2,-0.6 2,-0.5 -0.766 23.2-125.7-121.4 160.0 -3.1 -2.9 5.6 76 76 A I E -cD 12 54B 40 -22,-4.0 -22,-2.8 -2,-0.3 2,-0.6 -0.908 21.3-144.0-107.5 134.0 0.2 -1.5 6.9 77 77 A V E -cD 13 53B 0 -65,-3.5 -63,-2.6 -2,-0.5 2,-0.4 -0.888 18.5-177.7-106.4 117.7 2.5 0.1 4.5 78 78 A R E - D 0 52B 91 -26,-3.2 -26,-3.1 -2,-0.6 2,-0.6 -0.914 22.4-133.0-114.5 137.3 6.2 -0.4 5.1 79 79 A R E + D 0 51B 125 -2,-0.4 -28,-0.2 -28,-0.2 -2,-0.0 -0.810 30.2 177.3 -92.7 124.6 9.0 1.2 3.0 80 80 A I E - D 0 50B 43 -30,-2.4 -30,-3.7 -2,-0.6 2,-0.2 -0.936 32.1-107.4-125.9 149.3 11.7 -1.2 1.8 81 81 A P E - D 0 49B 52 0, 0.0 -32,-0.3 0, 0.0 -35,-0.1 -0.525 22.6-144.1 -72.8 141.1 14.7 -0.7 -0.4 82 82 A I - 0 0 93 -34,-2.2 -33,-0.1 -2,-0.2 -34,-0.1 0.999 67.7 -46.1 -69.7 -68.1 14.6 -2.3 -3.9 83 83 A G S S+ 0 0 62 -35,-0.3 3,-0.1 3,-0.0 -1,-0.1 -0.134 119.4 65.3-168.9 55.7 18.1 -3.5 -4.6 84 84 A G S S+ 0 0 56 1,-0.9 2,-0.3 -36,-0.3 -36,-0.1 0.274 97.4 36.8-138.4 -79.5 20.7 -1.0 -3.7 85 85 A V 0 0 86 -37,-0.3 -1,-0.9 1,-0.0 0, 0.0 -0.611 360.0 360.0 -77.7 140.5 20.8 -0.2 -0.1 86 86 A K 0 0 243 -2,-0.3 -6,-0.0 -3,-0.1 -4,-0.0 -0.775 360.0 360.0-149.8 360.0 20.2 -3.3 1.9