==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 04-MAY-00 1C8C . COMPND 2 MOLECULE: 5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.SU,Y.-G.GAO,H.ROBINSON,Y.-C.LIAW,S.P.EDMONDSON, . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4967.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 59.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 34.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 196 0, 0.0 2,-0.1 0, 0.0 15,-0.0 0.000 360.0 360.0 360.0 -53.6 8.1 15.4 -1.5 2 2 A A - 0 0 50 14,-0.1 15,-3.4 1,-0.1 16,-0.4 -0.373 360.0-116.6 -78.0 172.7 9.2 18.8 -0.1 3 3 A T E -A 16 0A 54 13,-0.3 2,-0.4 14,-0.1 13,-0.2 -0.714 11.8-147.1-114.5 162.6 10.6 19.0 3.4 4 4 A V E -A 15 0A 2 11,-2.6 11,-2.4 -2,-0.3 2,-0.4 -0.993 12.9-155.0-120.9 137.2 9.5 20.7 6.7 5 5 A K E +A 14 0A 143 -2,-0.4 2,-0.3 9,-0.2 9,-0.2 -0.906 24.3 156.7-111.2 142.6 12.1 22.0 9.2 6 6 A F E -A 13 0A 6 7,-2.9 7,-3.9 -2,-0.4 2,-0.5 -0.978 39.4-118.2-158.2 161.6 11.2 22.3 12.8 7 7 A K E +A 12 0A 125 38,-0.4 2,-0.4 -2,-0.3 5,-0.3 -0.951 33.0 179.9-111.2 127.3 12.9 22.4 16.2 8 8 A Y - 0 0 71 3,-2.6 -2,-0.1 -2,-0.5 36,-0.0 -0.995 64.8 -18.3-138.0 135.3 12.0 19.6 18.6 9 9 A K S S- 0 0 158 -2,-0.4 -1,-0.2 0, 0.0 3,-0.0 0.893 135.2 -35.5 32.9 57.1 13.2 19.0 22.1 10 10 A G S S+ 0 0 44 -3,-0.1 -2,-0.2 1,-0.1 0, 0.0 0.707 118.8 43.6 72.3 123.4 16.1 21.3 21.3 11 11 A E S S- 0 0 154 -4,-0.1 -3,-2.6 2,-0.0 2,-0.2 0.280 84.7 -75.7 82.6 150.6 17.7 21.4 17.8 12 12 A E E -A 7 0A 125 -5,-0.3 2,-0.3 -3,-0.0 -5,-0.3 -0.433 36.2-168.7 -81.0 139.9 16.4 21.4 14.3 13 13 A K E -A 6 0A 66 -7,-3.9 -7,-2.9 -2,-0.2 2,-0.4 -0.911 7.0-158.2-122.3 152.2 14.9 18.5 12.4 14 14 A Q E -A 5 0A 117 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.960 15.9-177.3-132.5 120.5 14.1 18.3 8.7 15 15 A V E -A 4 0A 16 -11,-2.4 -11,-2.6 -2,-0.4 2,-0.3 -0.898 32.6-112.9-119.5 139.6 11.5 15.7 7.6 16 16 A D E > -A 3 0A 60 -2,-0.3 3,-2.2 -13,-0.2 -13,-0.3 -0.609 26.9-132.9 -66.5 133.4 10.3 14.8 4.1 17 17 A I G > S+ 0 0 1 -15,-3.4 3,-1.4 1,-0.3 -1,-0.2 0.725 103.9 72.3 -66.5 -20.4 6.6 15.9 4.0 18 18 A S G 3 S+ 0 0 76 -16,-0.4 -1,-0.3 1,-0.2 -15,-0.1 0.786 93.0 55.9 -59.7 -24.3 5.8 12.4 2.5 19 19 A K G < S+ 0 0 111 -3,-2.2 16,-2.7 15,-0.1 -1,-0.2 0.583 79.2 114.9 -81.1 -10.8 6.5 11.0 6.0 20 20 A I E < -B 34 0B 14 -3,-1.4 14,-0.3 14,-0.2 3,-0.1 -0.408 40.6-179.1 -66.1 132.6 3.9 13.2 7.7 21 21 A K E + 0 0 137 12,-2.8 2,-0.3 1,-0.4 13,-0.2 0.895 63.0 3.2 -99.8 -46.1 1.1 11.0 9.1 22 22 A K E -B 33 0B 83 11,-0.7 11,-2.1 2,-0.0 -1,-0.4 -0.985 60.4-170.7-140.8 140.9 -1.4 13.4 10.7 23 23 A V E +B 32 0B 0 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.991 9.1 171.6-136.0 147.7 -1.5 17.2 10.8 24 24 A W E -B 31 0B 88 7,-2.8 7,-2.3 -2,-0.3 2,-0.4 -0.961 28.0-116.0-147.8 162.5 -3.8 19.5 12.8 25 25 A R E -B 30 0B 112 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.850 18.1-177.3-106.5 137.1 -4.1 23.2 13.6 26 26 A V E > -B 29 0B 74 3,-2.9 3,-2.5 -2,-0.4 2,-0.3 -0.822 68.7 -70.9-124.6 88.5 -3.8 24.7 17.1 27 27 A G T 3 S- 0 0 59 -2,-0.4 -1,-0.1 1,-0.3 0, 0.0 -0.475 118.3 -10.5 58.2-117.6 -4.5 28.4 16.4 28 28 A K T 3 S+ 0 0 140 -2,-0.3 20,-2.5 -3,-0.1 2,-0.4 0.440 120.5 96.7 -89.4 -1.5 -1.4 29.7 14.5 29 29 A M E < -BC 26 47B 79 -3,-2.5 -3,-2.9 18,-0.2 2,-0.7 -0.735 61.4-154.6 -90.0 134.4 0.5 26.4 15.3 30 30 A I E -BC 25 46B 0 16,-3.2 16,-2.2 -2,-0.4 2,-0.3 -0.921 21.1-172.9-106.0 109.3 0.6 23.6 12.7 31 31 A S E +BC 24 45B 18 -7,-2.3 -7,-2.8 -2,-0.7 2,-0.3 -0.770 9.9 160.1-105.2 146.0 1.2 20.4 14.7 32 32 A F E -BC 23 44B 0 12,-2.6 12,-2.0 -2,-0.3 2,-0.3 -0.967 32.3-131.5-155.1 167.8 1.9 16.9 13.2 33 33 A T E -BC 22 43B 23 -11,-2.1 -12,-2.8 -2,-0.3 -11,-0.7 -0.869 24.1-168.6-119.6 161.0 3.2 13.4 13.5 34 34 A Y E -BC 20 42B 17 8,-2.1 8,-3.0 -14,-0.3 2,-0.4 -0.995 26.1-103.2-149.4 152.3 5.5 11.7 11.1 35 35 A D E + C 0 41B 81 -16,-2.7 6,-0.2 -2,-0.3 2,-0.2 -0.684 40.0 177.2 -80.5 131.6 6.8 8.2 10.5 36 36 A E > - 0 0 70 4,-2.9 3,-0.7 -2,-0.4 4,-0.2 -0.610 37.0 -70.6-116.8-176.5 10.4 7.4 11.6 37 37 A G G > S+ 0 0 50 1,-0.2 3,-1.6 -2,-0.2 -1,-0.2 -0.161 108.9 36.8 -64.3 164.9 12.5 4.2 11.6 38 38 A G G 3 S- 0 0 83 1,-0.3 -1,-0.2 3,-0.0 3,-0.1 0.598 129.4 -70.0 73.5 9.1 11.8 1.3 13.9 39 39 A G G < S+ 0 0 82 -3,-0.7 -1,-0.3 1,-0.3 2,-0.2 0.639 97.4 141.2 80.9 11.9 8.1 1.6 13.6 40 40 A K < - 0 0 114 -3,-1.6 -4,-2.9 -4,-0.2 2,-0.4 -0.506 45.5-139.0 -94.1 159.3 8.2 4.8 15.7 41 41 A T E -C 35 0B 72 -6,-0.2 2,-0.2 -2,-0.2 -6,-0.2 -0.979 15.7-155.2-119.9 122.1 6.1 8.0 15.3 42 42 A G E -C 34 0B 5 -8,-3.0 -8,-2.1 -2,-0.4 2,-0.3 -0.615 4.4-143.4 -94.6 160.5 7.7 11.5 15.7 43 43 A R E +C 33 0B 157 -10,-0.2 2,-0.3 -2,-0.2 -10,-0.2 -0.898 26.2 152.1-120.6 148.4 6.1 14.8 16.7 44 44 A G E -C 32 0B 3 -12,-2.0 -12,-2.6 -2,-0.3 2,-0.3 -0.983 18.4-160.9-163.2 170.5 6.7 18.3 15.5 45 45 A A E -C 31 0B 33 -2,-0.3 -38,-0.4 -14,-0.2 2,-0.3 -0.978 3.9-171.2-158.3 151.5 5.1 21.7 15.0 46 46 A V E -C 30 0B 26 -16,-2.2 -16,-3.2 -2,-0.3 2,-0.1 -0.929 34.7 -95.0-138.8 159.7 5.7 24.9 13.0 47 47 A S E -C 29 0B 55 -2,-0.3 3,-0.3 -18,-0.2 4,-0.3 -0.478 30.3-130.9 -62.4 143.6 4.3 28.4 12.8 48 48 A E S > S+ 0 0 59 -20,-2.5 3,-1.5 1,-0.2 -1,-0.1 0.804 92.0 88.7 -62.7 -26.3 1.7 28.8 10.1 49 49 A K T 3 S+ 0 0 143 1,-0.3 -1,-0.2 -21,-0.2 -20,-0.0 0.854 109.8 4.9 -46.3 -59.7 3.6 31.8 8.9 50 50 A D T 3 S+ 0 0 157 -3,-0.3 -1,-0.3 2,-0.0 -2,-0.1 0.119 90.8 147.7-118.6 34.7 5.9 30.2 6.6 51 51 A A < - 0 0 14 -3,-1.5 5,-0.1 -4,-0.3 -47,-0.1 -0.306 58.7 -94.3 -62.4 143.0 4.7 26.5 6.7 52 52 A P >> - 0 0 34 0, 0.0 4,-2.0 0, 0.0 3,-0.9 -0.309 25.5-131.7 -63.3 138.0 5.1 24.5 3.4 53 53 A K H 3> S+ 0 0 159 1,-0.3 4,-2.9 2,-0.2 5,-0.3 0.841 106.3 63.1 -59.6 -32.6 1.9 24.6 1.3 54 54 A E H 3> S+ 0 0 56 1,-0.2 4,-1.0 2,-0.2 -1,-0.3 0.843 107.4 43.4 -58.4 -36.8 2.2 20.8 0.9 55 55 A L H <> S+ 0 0 0 -3,-0.9 4,-1.6 2,-0.2 -1,-0.2 0.899 111.7 51.9 -76.2 -43.3 1.7 20.5 4.6 56 56 A L H X S+ 0 0 48 -4,-2.0 4,-1.6 1,-0.2 -2,-0.2 0.886 108.6 51.3 -62.4 -40.1 -1.1 23.1 4.9 57 57 A Q H X S+ 0 0 98 -4,-2.9 4,-1.3 2,-0.2 -1,-0.2 0.844 103.6 58.2 -69.1 -28.0 -3.1 21.4 2.1 58 58 A M H >< S+ 0 0 51 -4,-1.0 3,-0.6 -5,-0.3 4,-0.2 0.947 104.6 53.6 -61.3 -41.0 -2.8 18.1 3.9 59 59 A L H >< S+ 0 0 26 -4,-1.6 3,-1.2 1,-0.2 -1,-0.2 0.922 107.9 48.2 -52.8 -50.6 -4.5 19.8 6.8 60 60 A A H 3< S+ 0 0 93 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.2 0.660 112.8 50.6 -71.1 -18.2 -7.4 21.0 4.7 61 61 A K T << S+ 0 0 168 -4,-1.3 2,-0.5 -3,-0.6 -1,-0.3 0.232 82.7 113.7-106.0 14.6 -7.8 17.5 3.2 62 62 A Q < - 0 0 30 -3,-1.2 2,-0.2 -4,-0.2 -1,-0.0 -0.947 62.9-147.6-126.1 128.2 -8.0 15.2 6.3 63 63 A K 0 0 298 -2,-0.5 -2,-0.0 1,-0.1 -3,-0.0 -0.580 360.0 360.0 161.2 94.9 -10.6 13.5 7.2 64 64 A K 0 0 283 -2,-0.2 -1,-0.1 -42,-0.0 -40,-0.0 0.377 360.0 360.0-179.4 360.0 -9.5 13.7 13.7