==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 27-MAR-99 1CG7 . COMPND 2 MOLECULE: PROTEIN (NON HISTONE PROTEIN 6 A); . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR F.H.T.ALLAIN,Y.M.YEN,J.E.MASSE,P.SCHULTZE,T.DIECKMANN, . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8949.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 61.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 18 19.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 38.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 253 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -57.2 -20.4 -12.6 11.0 2 2 A V + 0 0 123 2,-0.0 0, 0.0 0, 0.0 0, 0.0 -0.958 360.0 158.8-167.0 151.4 -18.3 -11.5 8.0 3 3 A T - 0 0 118 -2,-0.3 2,-0.0 2,-0.0 0, 0.0 -0.319 18.8-164.7 178.2 88.6 -18.7 -9.6 4.7 4 4 A P + 0 0 117 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.192 11.1 175.4 -75.0 170.8 -15.7 -8.1 3.0 5 5 A R + 0 0 213 2,-0.0 -2,-0.0 -2,-0.0 0, 0.0 -0.848 15.5 153.2-177.0 139.6 -15.9 -5.5 0.2 6 6 A E - 0 0 175 -2,-0.3 -1,-0.0 2,-0.0 0, 0.0 -0.467 18.2-167.9-177.5 97.0 -13.6 -3.3 -1.9 7 7 A P - 0 0 105 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 0.104 5.9-158.4 -75.0-166.9 -14.4 -2.1 -5.4 8 8 A K + 0 0 179 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.804 21.2 143.0-178.0 134.6 -12.0 -0.5 -7.9 9 9 A K + 0 0 189 -2,-0.2 2,-0.3 2,-0.0 0, 0.0 -0.920 6.8 158.2-174.4 150.5 -12.2 1.8 -10.9 10 10 A R + 0 0 199 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.897 4.0 170.1-177.2 148.6 -10.4 4.7 -12.6 11 11 A T + 0 0 117 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.821 1.6 170.2-170.8 127.4 -10.1 6.4 -15.9 12 12 A T + 0 0 144 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.955 11.8 150.2-147.5 123.5 -8.4 9.6 -17.1 13 13 A R + 0 0 204 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.983 18.2 99.2-154.5 142.0 -7.8 10.8 -20.6 14 14 A K + 0 0 201 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.968 30.2 89.8 169.4-168.8 -7.6 14.1 -22.4 15 15 A K - 0 0 205 -2,-0.3 -1,-0.2 2,-0.0 2,-0.2 0.465 49.3-148.4 64.5 146.0 -5.2 16.7 -23.8 16 16 A K - 0 0 195 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.660 3.5-144.0-132.9-172.4 -3.8 16.5 -27.3 17 17 A D - 0 0 81 -2,-0.2 3,-0.1 1,-0.1 -2,-0.0 -0.981 16.9-113.1-156.9 157.1 -0.7 17.4 -29.3 18 18 A P S S- 0 0 76 0, 0.0 2,-2.8 0, 0.0 -1,-0.1 0.203 75.2 -37.8 -75.0-159.8 0.3 18.8 -32.7 19 19 A N S S+ 0 0 73 68,-0.1 69,-0.1 69,-0.1 72,-0.1 -0.400 91.2 145.5 -66.0 77.2 2.2 16.9 -35.4 20 20 A A - 0 0 16 -2,-2.8 2,-0.6 -3,-0.1 65,-0.2 -0.924 56.7-108.1-121.3 145.6 4.4 15.1 -32.9 21 21 A P - 0 0 19 0, 0.0 -2,-0.0 0, 0.0 60,-0.0 -0.611 21.9-145.4 -75.0 113.9 5.9 11.6 -33.0 22 22 A K - 0 0 190 -2,-0.6 59,-0.0 1,-0.2 0, 0.0 0.910 65.2 -70.1 -40.0 -60.5 4.1 9.5 -30.4 23 23 A R S S- 0 0 209 -3,-0.1 -1,-0.2 3,-0.0 58,-0.1 0.235 77.5 -69.2 164.9 42.1 7.3 7.6 -29.7 24 24 A A - 0 0 30 57,-0.1 54,-0.1 53,-0.1 53,-0.0 0.928 66.9 -98.9 54.0 98.1 8.1 5.4 -32.7 25 25 A L - 0 0 82 1,-0.1 2,-0.2 52,-0.1 56,-0.1 0.052 43.1-108.4 -40.0 153.4 5.5 2.7 -32.9 26 26 A S >> - 0 0 62 1,-0.1 4,-1.6 4,-0.0 3,-1.3 -0.589 28.3-102.8 -90.8 153.4 6.6 -0.6 -31.4 27 27 A A H 3> S+ 0 0 11 1,-0.3 4,-1.7 -2,-0.2 5,-0.2 0.774 126.3 59.7 -41.7 -29.1 7.4 -3.7 -33.5 28 28 A Y H 3> S+ 0 0 42 2,-0.2 4,-3.2 1,-0.2 -1,-0.3 0.934 98.6 52.9 -66.9 -48.7 4.0 -4.7 -32.2 29 29 A M H <> S+ 0 0 55 -3,-1.3 4,-4.2 1,-0.2 -2,-0.2 0.847 107.5 54.7 -55.1 -37.1 2.2 -1.7 -33.8 30 30 A F H X S+ 0 0 51 -4,-1.6 4,-0.7 2,-0.2 -1,-0.2 0.947 114.5 37.2 -62.3 -51.7 3.8 -2.7 -37.1 31 31 A F H X S+ 0 0 0 -4,-1.7 4,-2.2 -5,-0.2 -2,-0.2 0.810 122.8 46.3 -70.1 -31.5 2.5 -6.2 -37.0 32 32 A A H X S+ 0 0 0 -4,-3.2 4,-0.5 2,-0.3 -2,-0.2 0.953 100.3 63.2 -74.6 -53.6 -0.8 -5.1 -35.5 33 33 A N H < S+ 0 0 84 -4,-4.2 -1,-0.2 1,-0.3 -2,-0.2 0.774 119.7 30.9 -41.0 -29.4 -1.3 -2.1 -37.8 34 34 A E H >< S+ 0 0 130 -4,-0.7 3,-0.7 -5,-0.2 4,-0.5 0.764 121.2 49.3 -99.1 -35.7 -1.5 -4.9 -40.4 35 35 A N H 3< S+ 0 0 30 -4,-2.2 4,-0.5 1,-0.2 -2,-0.2 -0.043 86.8 93.1 -93.7 30.0 -3.0 -7.6 -38.1 36 36 A R T 3< S+ 0 0 36 -4,-0.5 4,-0.3 -3,-0.2 -1,-0.2 0.508 92.8 35.8 -97.1 -9.3 -5.6 -5.2 -37.0 37 37 A D S <> S+ 0 0 110 -3,-0.7 4,-3.0 -5,-0.2 6,-0.2 0.647 103.6 69.7-111.6 -29.9 -8.1 -6.3 -39.6 38 38 A I T 4 S+ 0 0 99 -4,-0.5 4,-0.3 2,-0.2 -2,-0.1 0.882 113.7 31.7 -56.0 -40.6 -7.2 -10.0 -39.6 39 39 A V T >> S+ 0 0 12 -4,-0.5 3,-1.4 2,-0.2 4,-1.1 0.879 117.4 55.0 -83.4 -43.4 -8.7 -10.2 -36.1 40 40 A R T 34 S+ 0 0 100 1,-0.3 -2,-0.2 -4,-0.3 -1,-0.2 0.784 103.9 57.9 -59.6 -28.1 -11.3 -7.5 -36.7 41 41 A S T 3< S+ 0 0 92 -4,-3.0 -1,-0.3 1,-0.2 -2,-0.2 0.724 112.4 39.7 -73.9 -22.7 -12.4 -9.6 -39.7 42 42 A E T <4 S+ 0 0 156 -3,-1.4 -2,-0.2 -4,-0.3 -1,-0.2 0.482 129.9 31.1-101.7 -8.3 -13.0 -12.5 -37.4 43 43 A N >< + 0 0 51 -4,-1.1 3,-1.3 -6,-0.2 -1,-0.2 -0.401 64.0 148.3-148.3 61.7 -14.5 -10.3 -34.7 44 44 A P T 3 S+ 0 0 100 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 0.499 71.9 69.0 -75.0 -3.9 -16.2 -7.3 -36.4 45 45 A D T 3 S+ 0 0 165 2,-0.1 2,-0.2 -3,-0.0 -5,-0.1 0.644 100.4 54.0 -86.1 -17.9 -18.7 -7.4 -33.5 46 46 A I S < S- 0 0 57 -3,-1.3 2,-0.2 -6,-0.1 -3,-0.1 -0.440 76.6-136.5-106.4-178.1 -15.9 -6.2 -31.2 47 47 A T >> - 0 0 83 -2,-0.2 4,-2.7 0, 0.0 3,-1.9 -0.672 41.0 -79.4-129.8-176.2 -13.5 -3.2 -31.3 48 48 A F H 3>>S+ 0 0 86 1,-0.3 4,-2.2 2,-0.2 5,-0.7 0.774 114.9 82.1 -57.1 -27.5 -9.9 -2.4 -30.7 49 49 A G H 345S+ 0 0 59 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.822 117.0 11.0 -46.3 -36.4 -10.8 -2.4 -27.0 50 50 A Q H <45S+ 0 0 75 -3,-1.9 -1,-0.2 2,-0.1 -2,-0.2 0.578 130.7 57.2-115.7 -23.0 -10.4 -6.2 -27.2 51 51 A V H >X5S+ 0 0 0 -4,-2.7 4,-2.5 2,-0.2 3,-1.6 0.940 111.0 41.6 -74.0 -50.5 -8.9 -6.5 -30.6 52 52 A G T 3<5S+ 0 0 11 -4,-2.2 4,-0.3 1,-0.3 -1,-0.2 0.643 116.2 52.5 -70.9 -15.1 -5.9 -4.3 -29.8 53 53 A K T 34 S+ 0 0 124 -3,-1.6 3,-3.1 -6,-0.2 4,-0.7 0.647 96.4 67.0-120.6 -41.7 -5.7 -9.4 -28.1 55 55 A L H >X S+ 0 0 1 -4,-2.5 4,-3.3 1,-0.3 3,-1.2 0.829 89.0 72.1 -51.2 -34.0 -3.2 -9.0 -31.0 56 56 A G H 3> S+ 0 0 32 -4,-0.3 4,-1.6 1,-0.3 -1,-0.3 0.760 95.4 52.4 -53.3 -26.3 -0.6 -8.7 -28.2 57 57 A E H <> S+ 0 0 123 -3,-3.1 4,-0.7 2,-0.2 -1,-0.3 0.781 111.4 44.8 -80.2 -29.7 -1.2 -12.4 -27.7 58 58 A K H << S+ 0 0 108 -3,-1.2 4,-0.3 -4,-0.7 -2,-0.2 0.853 110.0 54.8 -80.5 -38.4 -0.5 -13.1 -31.4 59 59 A W H >< S+ 0 0 38 -4,-3.3 3,-1.3 2,-0.2 -2,-0.2 0.954 114.1 40.3 -58.5 -52.3 2.5 -10.8 -31.5 60 60 A K H >< S+ 0 0 144 -4,-1.6 3,-0.7 1,-0.3 -1,-0.2 0.785 117.1 50.6 -66.3 -27.8 4.1 -12.6 -28.6 61 61 A A T 3< S+ 0 0 59 -4,-0.7 -1,-0.3 1,-0.2 -2,-0.2 0.433 88.0 84.6 -87.8 -1.4 2.8 -15.8 -30.3 62 62 A L T <> S- 0 0 28 -3,-1.3 4,-1.6 -4,-0.3 5,-0.3 0.432 93.4-142.1 -78.6 0.8 4.4 -14.6 -33.5 63 63 A T H <> - 0 0 77 -3,-0.7 4,-1.7 1,-0.2 3,-0.5 0.242 31.0 -74.5 56.6 170.2 7.6 -16.2 -32.2 64 64 A P H > S+ 0 0 64 0, 0.0 4,-0.5 0, 0.0 -1,-0.2 0.540 129.0 69.4 -75.0 -7.1 11.0 -14.6 -32.7 65 65 A E H 4 S+ 0 0 136 2,-0.2 -2,-0.2 -3,-0.2 5,-0.1 0.878 109.2 30.5 -76.6 -40.7 10.8 -15.8 -36.3 66 66 A E H X S+ 0 0 101 -4,-1.6 4,-1.5 -3,-0.5 -3,-0.2 0.758 123.2 49.2 -87.3 -29.4 8.0 -13.4 -37.2 67 67 A K H X S+ 0 0 70 -4,-1.7 4,-1.9 -5,-0.3 5,-0.5 0.607 97.9 74.0 -83.3 -14.0 9.2 -10.8 -34.7 68 68 A Q H X S+ 0 0 118 -4,-0.5 4,-1.3 2,-0.2 -2,-0.2 0.969 109.9 24.9 -61.6 -57.0 12.7 -11.2 -36.1 69 69 A P H > S+ 0 0 80 0, 0.0 4,-1.0 0, 0.0 -2,-0.2 0.895 124.8 53.3 -75.0 -43.0 12.0 -9.3 -39.4 70 70 A Y H >X S+ 0 0 70 -4,-1.5 3,-1.7 2,-0.2 4,-1.4 0.974 115.0 38.0 -54.6 -64.0 9.2 -7.3 -38.0 71 71 A E H 3X S+ 0 0 78 -4,-1.9 4,-1.0 1,-0.3 -1,-0.2 0.865 110.2 62.7 -56.1 -38.9 11.1 -5.9 -35.0 72 72 A A H 3< S+ 0 0 57 -4,-1.3 -1,-0.3 -5,-0.5 -2,-0.2 0.764 103.5 51.0 -57.9 -25.1 14.1 -5.6 -37.2 73 73 A K H XX S+ 0 0 146 -3,-1.7 3,-2.1 -4,-1.0 4,-1.4 0.875 103.6 54.7 -78.9 -40.8 12.0 -3.2 -39.2 74 74 A A H 3< S+ 0 0 18 -4,-1.4 4,-0.5 1,-0.3 -2,-0.2 0.635 95.9 71.2 -66.7 -13.2 11.1 -1.1 -36.1 75 75 A Q T 3< S+ 0 0 120 -4,-1.0 -1,-0.3 -5,-0.2 -2,-0.2 0.633 102.6 41.4 -76.5 -15.0 14.8 -0.9 -35.7 76 76 A A T X> S+ 0 0 68 -3,-2.1 3,-2.7 2,-0.1 4,-0.9 0.765 101.0 66.9 -98.8 -36.1 14.9 1.4 -38.7 77 77 A D H 3X S+ 0 0 17 -4,-1.4 4,-2.9 1,-0.3 5,-0.2 0.693 79.8 85.5 -58.1 -17.6 11.8 3.4 -37.8 78 78 A K H 34 S+ 0 0 142 -4,-0.5 -1,-0.3 1,-0.2 -2,-0.1 0.759 97.6 38.3 -55.0 -24.7 13.9 4.6 -34.9 79 79 A K H X4 S+ 0 0 159 -3,-2.7 3,-2.3 2,-0.1 4,-0.4 0.826 109.7 58.4 -92.8 -41.1 15.2 7.1 -37.4 80 80 A R H >X S+ 0 0 168 -4,-0.9 3,-1.8 1,-0.3 4,-0.9 0.826 95.0 67.1 -57.4 -33.4 11.9 7.8 -39.1 81 81 A Y T 3< S+ 0 0 61 -4,-2.9 -1,-0.3 1,-0.3 4,-0.3 0.655 94.2 59.7 -62.0 -15.4 10.6 8.8 -35.8 82 82 A E T <> S+ 0 0 86 -3,-2.3 4,-2.0 -5,-0.2 -1,-0.3 0.666 92.3 66.3 -85.3 -19.8 12.9 11.7 -36.1 83 83 A S H <> S+ 0 0 76 -3,-1.8 4,-0.6 -4,-0.4 -2,-0.2 0.880 107.7 38.6 -67.7 -39.7 11.2 12.9 -39.2 84 84 A E H X S+ 0 0 97 -4,-0.9 4,-1.3 1,-0.2 -1,-0.2 0.578 114.2 57.5 -85.4 -12.0 8.1 13.7 -37.3 85 85 A K H > S+ 0 0 80 -4,-0.3 4,-2.5 -5,-0.2 5,-0.3 0.796 96.7 60.9 -85.6 -33.1 10.2 15.0 -34.5 86 86 A E H X S+ 0 0 138 -4,-2.0 4,-1.4 1,-0.2 -2,-0.2 0.842 109.5 43.3 -61.5 -34.8 11.9 17.5 -36.6 87 87 A L H X S+ 0 0 101 -4,-0.6 4,-1.3 2,-0.2 -1,-0.2 0.906 108.9 57.0 -76.4 -44.9 8.6 19.1 -37.3 88 88 A Y H >X S+ 0 0 84 -4,-1.3 3,-0.5 1,-0.2 4,-0.5 0.907 114.9 37.7 -51.3 -48.4 7.4 18.9 -33.7 89 89 A N H >< S+ 0 0 60 -4,-2.5 3,-1.3 1,-0.2 -1,-0.2 0.837 105.5 68.4 -72.5 -34.4 10.5 20.9 -32.6 90 90 A A H >< S+ 0 0 63 -4,-1.4 3,-0.6 -5,-0.3 -1,-0.2 0.766 98.7 53.7 -54.9 -25.5 10.2 23.1 -35.7 91 91 A T H << S+ 0 0 79 -4,-1.3 -1,-0.3 -3,-0.5 -2,-0.2 0.768 115.5 38.2 -79.6 -28.2 7.0 24.3 -34.0 92 92 A L T << 0 0 117 -3,-1.3 -1,-0.3 -4,-0.5 -2,-0.1 -0.524 360.0 360.0-121.8 61.9 8.9 25.2 -30.9 93 93 A A < 0 0 125 -3,-0.6 -3,-0.1 -2,-0.2 0, 0.0 -0.431 360.0 360.0 -99.6 360.0 12.2 26.5 -32.2