==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRUS 17-NOV-93 1CGM . COMPND 2 MOLECULE: RNA (5'-R(P*GP*AP*A)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR H.WANG,G.STUBBS . 160 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 10982.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 92 57.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 49 30.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 10 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 E A 0 0 93 0, 0.0 2,-0.6 0, 0.0 151,-0.0 0.000 360.0 360.0 360.0 -99.4 80.4 35.1 26.9 2 2 E Y + 0 0 87 148,-0.2 148,-0.2 146,-0.1 146,-0.1 -0.805 360.0 114.6-121.1 95.4 78.1 33.4 29.4 3 3 E N - 0 0 80 -2,-0.6 146,-1.6 146,-0.2 2,-0.5 -0.987 61.5-122.8-159.2 143.2 74.3 33.9 28.7 4 4 E P - 0 0 66 0, 0.0 144,-0.1 0, 0.0 143,-0.1 -0.814 42.0-156.5 -62.7 121.8 70.7 32.8 27.9 5 5 E I + 0 0 103 -2,-0.5 143,-0.0 142,-0.5 142,-0.0 0.937 53.8 35.0 -80.9 -62.2 69.8 34.9 24.8 6 6 E T S S- 0 0 119 2,-0.0 2,-0.1 3,-0.0 0, 0.0 0.937 113.4 -23.7 -85.9 -93.1 66.2 35.8 23.7 7 7 E P S S- 0 0 92 0, 0.0 2,-1.0 0, 0.0 3,-0.1 -0.108 92.7 -77.3 -82.4-157.7 63.3 36.5 26.4 8 8 E S + 0 0 132 1,-0.1 -3,-0.0 2,-0.1 -2,-0.0 -0.610 69.3 172.8-102.6 74.9 63.9 34.9 29.8 9 9 E K + 0 0 99 -2,-1.0 -1,-0.1 2,-0.0 -4,-0.0 0.248 12.7 150.4 -57.0 -9.4 62.8 31.7 28.2 10 10 E L + 0 0 68 1,-0.1 -2,-0.1 -3,-0.1 47,-0.0 0.054 23.9 169.1 -42.5 131.4 63.6 29.3 31.1 11 11 E I >> + 0 0 72 4,-0.0 3,-1.5 2,-0.0 4,-0.9 -0.140 38.2 123.6-136.8 43.9 61.8 26.0 31.8 12 12 E A T 34 + 0 0 13 1,-0.3 4,-0.1 2,-0.2 -2,-0.1 -0.070 65.8 79.0 -90.1 34.3 64.2 24.5 34.5 13 13 E F T 34 S+ 0 0 137 40,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.415 95.8 39.7-115.5 -23.7 61.0 24.5 36.4 14 14 E S T <4 S- 0 0 35 -3,-1.5 2,-0.3 1,-0.1 -2,-0.2 0.900 116.9 -6.4-105.4 -60.7 59.7 21.4 34.7 15 15 E A S < S+ 0 0 0 -4,-0.9 56,-0.6 1,-0.1 -1,-0.1 -0.807 77.9 87.7-159.3 120.5 62.2 18.7 34.0 16 16 E S S S+ 0 0 2 36,-0.7 53,-0.2 -2,-0.3 37,-0.1 0.234 82.3 68.7-172.2 -5.1 65.9 18.0 34.2 17 17 E Y S S+ 0 0 100 35,-0.8 4,-0.2 51,-0.1 5,-0.2 0.881 104.8 57.5 -70.0 -46.2 66.5 16.6 37.8 18 18 E V S >S+ 0 0 2 34,-0.3 5,-1.6 1,-0.1 4,-0.2 0.446 70.3 103.5 -60.1 -29.9 64.5 13.7 36.3 19 19 E P T >S+ 0 0 7 0, 0.0 5,-0.5 0, 0.0 4,-0.2 0.779 93.9 2.9 -36.6 -86.1 66.2 12.1 33.0 20 20 E V T >>S+ 0 0 92 3,-0.2 4,-1.1 47,-0.2 5,-0.6 0.991 128.8 46.8 -65.4 -60.5 67.9 8.8 33.7 21 21 E R H >>S+ 0 0 104 -4,-0.2 4,-0.9 1,-0.2 5,-0.5 0.923 119.4 20.3 -52.0 -82.5 67.2 8.2 37.3 22 22 E T H >5S+ 0 0 41 -4,-0.2 4,-0.8 -5,-0.2 5,-0.5 0.801 119.4 64.7 -77.7 -19.7 63.8 8.7 38.5 23 23 E L H >X> S+ 0 0 90 2,-0.1 4,-1.3 3,-0.1 3,-0.9 0.822 99.2 56.2-100.9 -67.6 41.5 6.5 44.9 39 39 E A H 3> S+ 0 0 67 1,-0.2 4,-1.8 2,-0.2 5,-0.2 0.748 102.3 55.7 -49.3 -35.5 44.9 6.2 46.7 40 40 E G H 3> S+ 0 0 5 -6,-1.3 4,-1.4 2,-0.2 -1,-0.2 0.888 107.1 46.6 -72.2 -35.9 47.1 5.6 43.6 41 41 E R H <> S+ 0 0 18 -3,-0.9 4,-1.6 -7,-0.6 -1,-0.2 0.962 113.4 50.5 -67.8 -43.5 46.1 8.6 41.5 42 42 E D H X S+ 0 0 69 -4,-1.3 4,-1.6 1,-0.2 3,-0.4 0.958 115.1 39.6 -55.1 -67.1 46.6 11.0 44.5 43 43 E S H X S+ 0 0 69 -4,-1.8 4,-1.8 1,-0.2 -1,-0.2 0.737 110.8 59.6 -59.3 -23.2 50.1 9.8 45.6 44 44 E F H X>S+ 0 0 35 -4,-1.4 5,-1.0 -5,-0.2 4,-0.5 0.916 102.8 51.6 -71.7 -40.6 51.4 9.5 42.0 45 45 E R H <>S+ 0 0 48 -4,-1.6 5,-2.0 -3,-0.4 4,-0.4 0.974 110.6 52.4 -51.6 -52.2 50.7 13.1 41.3 46 46 E E H X5S+ 0 0 129 -4,-1.6 4,-0.9 3,-0.2 5,-0.5 0.895 115.2 32.1 -52.2 -79.6 52.7 13.8 44.4 47 47 E S H X5S+ 0 0 65 -4,-1.8 4,-1.2 3,-0.2 -3,-0.1 0.906 124.1 22.2 -52.0 -78.2 56.0 11.9 43.7 48 48 E L H <5S+ 0 0 13 -4,-0.5 -1,-0.1 1,-0.1 -3,-0.1 0.914 129.5 34.3 -65.5 -46.4 57.0 11.7 40.0 49 49 E S H 4 + 0 0 13 -2,-0.9 5,-0.8 -58,-0.1 -1,-0.2 0.198 66.0 48.2-154.4 -75.2 60.7 19.7 28.3 73 73 E G T 5S+ 0 0 31 -3,-0.4 4,-0.3 3,-0.2 64,-0.1 0.907 115.4 25.2 -58.1 -58.6 59.8 21.2 25.0 74 74 E P T 5S+ 0 0 82 0, 0.0 63,-0.1 0, 0.0 -1,-0.1 0.996 127.7 20.6 -76.4 -70.2 59.4 18.2 22.7 75 75 E V T 5S+ 0 0 24 61,-0.4 4,-0.5 1,-0.2 -2,-0.1 0.997 123.8 48.7 -68.3 -64.9 58.5 14.8 24.3 76 76 E L T >>S+ 0 0 4 1,-0.3 5,-0.8 2,-0.2 4,-0.6 0.587 86.4 81.8 -54.4 -29.7 57.0 16.1 27.6 77 77 E R T 4>5S+ 0 0 75 0, 0.0 4,-2.8 0, 0.0 3,-0.7 0.910 127.8 36.3 -61.5 -78.3 52.0 16.0 25.5 79 79 E I H 3>>S+ 0 0 14 -4,-0.5 4,-2.3 1,-0.2 5,-0.6 0.832 113.9 43.9 -45.2 -77.5 52.7 13.6 28.3 80 80 E F H 3<5S+ 0 0 21 -4,-0.6 -1,-0.2 3,-0.2 -3,-0.1 0.666 126.4 36.5 -51.8 -23.7 53.7 15.4 31.6 81 81 E V H <> S- 0 0 85 3,-0.1 3,-1.0 1,-0.1 -1,-0.4 -0.964 87.4-130.7-104.8 110.7 26.3 -1.9 50.3 99 99 E P T 3 S+ 0 0 99 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.637 94.9 26.9 -32.3 -38.2 28.7 -1.6 47.3 100 100 E S T 3 S+ 0 0 103 -5,-0.0 5,-0.0 4,-0.0 -5,-0.0 -0.371 73.3 147.0-128.3 63.8 26.1 -1.9 44.5 101 101 E N S < S- 0 0 66 -3,-1.0 2,-0.4 1,-0.0 -5,-0.2 -0.954 70.3 -71.7-127.9 125.5 22.6 -0.6 45.7 102 102 E P S S+ 0 0 102 0, 0.0 3,-0.5 0, 0.0 -1,-0.0 -0.622 119.1 41.3 -88.4 -15.6 21.2 0.7 43.0 103 103 E T S >>>S+ 0 0 65 -2,-0.4 5,-1.3 1,-0.2 3,-0.6 0.015 70.9 125.4 -91.3 29.3 22.3 4.1 41.5 104 104 E T T 345S+ 0 0 22 1,-0.2 5,-0.4 3,-0.1 -1,-0.2 0.905 96.3 2.7 -60.9 -43.6 26.0 3.2 41.9 105 105 E A T 345S+ 0 0 65 -3,-0.5 6,-0.4 3,-0.1 -1,-0.2 -0.113 129.9 64.7-135.2 53.3 26.6 3.8 38.1 106 106 E E T <45S+ 0 0 145 -3,-0.6 -3,-0.1 4,-0.1 -2,-0.1 0.679 114.8 10.6-124.2 -63.4 23.2 5.0 37.0 107 107 E S T <5S+ 0 0 89 -4,-0.5 -3,-0.1 3,-0.0 3,-0.1 0.766 126.1 45.4-101.6 -38.9 22.4 8.3 38.8 108 108 E L S - 0 0 53 -2,-0.2 4,-1.1 1,-0.1 3,-0.5 -0.918 25.8-100.2-136.2 161.1 28.6 6.8 34.7 111 111 E V H > S+ 0 0 84 -6,-0.4 4,-2.0 -2,-0.3 5,-0.4 0.881 111.2 50.9 -37.8 -66.1 30.9 4.0 33.3 112 112 E K H > S+ 0 0 162 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.782 104.0 58.4 -55.5 -38.7 33.1 5.9 30.8 113 113 E R H 4 S+ 0 0 167 -3,-0.5 -1,-0.2 1,-0.1 -2,-0.2 0.945 116.8 28.5 -55.3 -58.2 34.1 8.7 33.2 114 114 E T H >X S+ 0 0 41 -4,-1.1 3,-0.9 -3,-0.3 4,-0.9 0.886 121.9 47.0 -71.9 -49.9 35.8 6.5 35.9 115 115 E D H >X S+ 0 0 74 -4,-2.0 3,-0.9 1,-0.2 4,-0.8 0.944 107.3 56.3 -64.6 -45.3 37.0 3.5 34.0 116 116 E D H 3X S+ 0 0 80 -4,-1.4 4,-0.6 -5,-0.4 -1,-0.2 0.494 94.0 68.4 -78.3 2.8 38.6 5.4 31.1 117 117 E A H X> S+ 0 0 11 -3,-0.9 4,-1.8 -4,-0.2 3,-0.5 0.913 95.6 57.8 -72.3 -46.0 40.8 7.3 33.5 118 118 E S H X S+ 0 0 160 -4,-1.3 4,-1.2 1,-0.2 3,-0.5 0.863 107.9 29.8 -38.5 -79.5 48.2 3.1 30.8 123 123 E A H 3X S+ 0 0 43 -4,-1.2 4,-2.1 1,-0.2 -1,-0.2 0.666 113.3 62.7 -69.3 -16.2 49.7 4.0 27.4 124 124 E E H 3X S+ 0 0 57 -4,-0.8 4,-1.5 -3,-0.5 -1,-0.2 0.935 100.4 54.8 -74.9 -37.8 50.9 7.5 28.4 125 125 E I H X S+ 0 0 98 -4,-1.4 4,-0.7 1,-0.2 3,-0.6 0.953 120.0 46.2 -62.6 -50.1 60.8 4.8 24.9 131 131 E S H 3< S+ 0 0 39 -4,-1.3 4,-0.3 1,-0.2 -1,-0.2 0.747 108.7 49.4 -67.7 -35.3 60.9 8.4 23.9 132 132 E I H 3< S+ 0 0 16 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.1 0.633 105.3 58.1 -84.8 -9.8 62.7 10.0 26.9 133 133 E S H << S+ 0 0 80 -4,-0.8 -1,-0.2 -3,-0.6 -2,-0.2 0.677 133.7 3.3 -86.0 -19.4 65.5 7.5 26.9 134 134 E K S < S+ 0 0 188 -4,-0.7 4,-0.3 -3,-0.1 3,-0.3 0.618 102.7 94.8-120.5 -65.3 66.2 8.5 23.2 135 135 E G S S- 0 0 31 -4,-0.3 3,-0.4 -5,-0.2 2,-0.2 0.284 85.4 -63.3 -38.4 151.8 64.1 11.5 21.7 136 136 E F S S+ 0 0 184 1,-0.2 -61,-0.4 -62,-0.1 -1,-0.2 -0.146 100.8 73.8 -55.0 105.9 65.1 15.1 21.6 137 137 E D + 0 0 14 -3,-0.3 -67,-0.8 -2,-0.2 -1,-0.2 0.286 53.7 140.7-171.7 -25.5 65.6 17.0 24.8 138 138 E V B -A 69 0A 62 -3,-0.4 2,-1.0 -4,-0.3 -69,-0.3 -0.016 39.2-149.9 -52.3 126.1 69.0 15.8 26.4 139 139 E Y + 0 0 29 -71,-1.2 -72,-0.4 -72,-0.1 -71,-0.2 -0.700 44.0 134.0-106.2 85.8 71.3 18.3 28.1 140 140 E D > - 0 0 61 -2,-1.0 4,-1.9 -74,-0.2 5,-0.2 -0.047 67.5 -52.9-100.0-155.9 74.7 16.9 27.7 141 141 E R H > S+ 0 0 156 2,-0.2 4,-1.0 1,-0.2 3,-0.4 0.964 129.6 25.8 -62.1 -71.1 78.0 18.5 26.6 142 142 E A H > S+ 0 0 78 1,-0.2 4,-0.6 2,-0.2 -1,-0.2 0.561 121.9 59.6 -75.5 -1.9 77.5 20.4 23.2 143 143 E S H > S+ 0 0 51 2,-0.2 4,-1.4 3,-0.1 -1,-0.2 0.764 100.0 50.0 -91.5 -34.5 73.8 20.8 24.1 144 144 E F H X S+ 0 0 34 -4,-1.9 4,-1.2 -3,-0.4 -2,-0.2 0.772 108.1 59.2 -72.5 -22.1 74.4 22.7 27.4 145 145 E E H < S+ 0 0 107 -4,-1.0 5,-0.3 -5,-0.2 -2,-0.2 0.891 101.7 54.9 -62.5 -44.1 76.7 24.8 25.0 146 146 E A H < S+ 0 0 67 -4,-0.6 -2,-0.2 3,-0.1 -1,-0.2 0.912 112.6 38.0 -58.7 -48.2 73.5 25.5 22.9 147 147 E A H < S+ 0 0 15 -4,-1.4 -142,-0.5 1,-0.1 2,-0.3 0.998 122.7 32.7 -69.6 -68.8 71.3 27.0 25.8 148 148 E F S < S- 0 0 27 -4,-1.2 2,-0.4 -144,-0.1 -1,-0.1 -0.689 94.0-114.2 -87.2 141.0 73.8 29.0 27.8 149 149 E S - 0 0 32 -146,-1.6 2,-0.7 -2,-0.3 -146,-0.2 -0.639 37.4-143.3 -74.3 125.6 76.6 30.6 25.9 150 150 E V + 0 0 56 -2,-0.4 2,-0.2 -5,-0.3 -148,-0.2 -0.894 50.4 119.2-111.1 112.1 79.6 28.8 27.2 151 151 E V + 0 0 96 -2,-0.7 2,-0.1 2,-0.0 -2,-0.1 -0.727 24.3 150.3-157.4 99.1 82.9 30.6 27.6 152 152 E W - 0 0 169 -2,-0.2 2,-0.3 -151,-0.0 -2,-0.0 -0.461 17.1-176.5-151.6 92.4 84.4 30.8 31.3 153 153 E S + 0 0 115 -2,-0.1 2,-0.3 0, 0.0 -2,-0.0 -0.576 11.7 155.9 -86.6 125.4 88.1 30.9 31.9 154 154 E E - 0 0 71 -2,-0.3 -2,-0.0 1,-0.1 4,-0.0 -0.954 13.8-171.9-151.8 131.7 89.8 30.8 35.3 155 155 E A + 0 0 79 -2,-0.3 -1,-0.1 2,-0.0 4,-0.1 0.983 53.5 11.5 -92.8 -72.8 93.4 29.7 36.2 156 156 E T S S- 0 0 119 1,-0.1 3,-0.3 2,-0.1 -2,-0.0 0.992 123.0 -12.9 -86.8 -84.1 95.0 29.3 39.6 157 157 E T S S+ 0 0 114 1,-0.1 3,-0.3 2,-0.0 -1,-0.1 -0.389 99.5 107.5-120.6 46.8 93.1 29.3 43.0 158 158 E S S S+ 0 0 61 1,-0.2 -1,-0.1 2,-0.1 -2,-0.1 0.521 72.0 64.2 -89.5 -21.2 90.0 30.6 41.3 159 159 E K 0 0 134 -3,-0.3 -1,-0.2 1,-0.1 -2,-0.0 -0.177 360.0 360.0 -96.8 34.7 88.7 27.1 41.8 160 160 E A 0 0 135 -3,-0.3 -2,-0.1 0, 0.0 -1,-0.1 0.509 360.0 360.0-153.7 360.0 88.8 27.4 45.7