==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 26-APR-99 1CK2 . COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L30; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR H.MAO,J.R.WILLAMSON . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5741.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 77 74.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 11.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 14.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 31.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 56 0, 0.0 2,-0.2 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 91.9 11.1 1.0 -11.1 2 3 A P > - 0 0 74 0, 0.0 3,-2.1 0, 0.0 4,-0.2 -0.541 360.0-101.7 -58.7 136.0 13.5 1.0 -14.1 3 4 A V T 3 S+ 0 0 147 1,-0.3 3,-0.3 -2,-0.2 0, 0.0 0.661 116.3 28.3 -39.3 -45.4 16.1 3.7 -13.3 4 5 A K T > S+ 0 0 123 1,-0.2 3,-0.6 2,-0.1 -1,-0.3 0.595 101.0 85.4 -90.6 -14.6 14.7 6.5 -15.5 5 6 A S T <> + 0 0 25 -3,-2.1 4,-2.2 1,-0.2 5,-0.3 0.142 46.1 108.8 -90.4 20.9 11.0 5.5 -15.5 6 7 A Q T 34 S+ 0 0 65 -3,-0.3 4,-0.5 1,-0.2 -1,-0.2 0.676 89.6 42.9 -64.7 -20.3 9.7 7.3 -12.3 7 8 A E T <> S+ 0 0 86 -3,-0.6 4,-3.2 3,-0.1 -1,-0.2 0.805 110.5 56.1 -87.6 -37.8 7.9 9.7 -14.7 8 9 A S H > S+ 0 0 47 2,-0.2 4,-2.9 -4,-0.2 5,-0.3 0.923 108.7 43.7 -68.0 -50.7 6.6 7.0 -17.1 9 10 A I H X S+ 0 0 3 -4,-2.2 4,-2.7 2,-0.2 5,-0.2 0.940 116.8 50.0 -60.8 -44.5 4.8 4.9 -14.5 10 11 A N H > S+ 0 0 18 -4,-0.5 4,-2.7 -5,-0.3 5,-0.2 0.960 115.8 40.6 -50.8 -62.5 3.4 8.1 -13.0 11 12 A Q H X S+ 0 0 139 -4,-3.2 4,-2.9 1,-0.2 -2,-0.2 0.927 118.6 45.7 -56.3 -53.5 2.1 9.5 -16.3 12 13 A K H X S+ 0 0 52 -4,-2.9 4,-2.0 2,-0.2 -1,-0.2 0.876 113.9 48.8 -62.8 -40.7 0.8 6.2 -17.7 13 14 A L H X S+ 0 0 0 -4,-2.7 4,-3.0 -5,-0.3 -2,-0.2 0.916 114.1 45.0 -69.0 -41.9 -1.0 5.3 -14.4 14 15 A A H X S+ 0 0 37 -4,-2.7 4,-1.7 -5,-0.2 -2,-0.2 0.935 110.8 54.7 -63.8 -43.3 -2.6 8.7 -14.1 15 16 A L H < S+ 0 0 73 -4,-2.9 -2,-0.2 -5,-0.2 -1,-0.2 0.868 113.4 43.2 -53.5 -40.7 -3.5 8.4 -17.9 16 17 A V H >X S+ 0 0 0 -4,-2.0 4,-3.3 1,-0.2 3,-2.6 0.947 106.4 58.8 -65.6 -54.6 -5.2 5.1 -16.9 17 18 A I H 3< S+ 0 0 27 -4,-3.0 -2,-0.2 1,-0.3 -1,-0.2 0.737 85.4 82.7 -52.9 -24.0 -6.9 6.5 -13.7 18 19 A K T 3< S- 0 0 141 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.748 126.7 -15.1 -47.7 -32.6 -8.6 9.0 -16.1 19 20 A S T <4 S+ 0 0 73 -3,-2.6 -2,-0.2 -4,-0.2 -1,-0.2 0.446 113.3 100.0-149.9 -12.0 -11.2 6.1 -16.7 20 21 A G S < S- 0 0 5 -4,-3.3 2,-0.6 -5,-0.1 74,-0.2 -0.348 77.4 -98.4 -79.6 161.0 -9.7 2.7 -15.4 21 22 A K E +A 93 0A 113 72,-2.4 71,-3.1 -2,-0.1 72,-1.2 -0.718 54.1 158.2 -89.6 115.0 -10.6 1.1 -12.0 22 23 A Y E -A 91 0A 106 -2,-0.6 2,-0.3 69,-0.2 69,-0.2 -0.695 28.0-147.7-125.3 174.3 -8.1 1.7 -9.2 23 24 A T E -A 90 0A 17 67,-2.1 67,-1.9 -2,-0.2 2,-0.4 -0.978 11.5-154.5-146.3 149.8 -7.7 1.6 -5.4 24 25 A L E +A 89 0A 33 -2,-0.3 4,-0.2 65,-0.2 65,-0.2 -0.993 49.6 27.3-136.1 132.2 -5.5 3.8 -3.0 25 26 A G S > S- 0 0 18 63,-2.7 4,-2.6 -2,-0.4 3,-0.2 0.172 86.1 -81.0 93.3 148.7 -4.0 3.3 0.5 26 27 A Y H > S+ 0 0 66 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.868 126.6 40.9 -51.3 -58.7 -3.0 0.1 2.4 27 28 A K H > S+ 0 0 181 1,-0.2 4,-2.9 2,-0.2 -1,-0.2 0.888 115.6 53.9 -56.7 -41.8 -6.5 -1.1 3.7 28 29 A S H > S+ 0 0 44 -4,-0.2 4,-2.3 2,-0.2 -2,-0.2 0.919 113.8 39.9 -59.8 -53.0 -8.1 -0.2 0.3 29 30 A T H X S+ 0 0 0 -4,-2.6 4,-2.9 2,-0.2 5,-0.4 0.995 114.5 53.2 -59.9 -58.5 -5.6 -2.3 -1.7 30 31 A V H X S+ 0 0 19 -4,-2.8 4,-2.6 1,-0.2 -2,-0.2 0.850 114.0 43.4 -44.5 -53.2 -5.7 -5.2 0.9 31 32 A K H X S+ 0 0 111 -4,-2.9 4,-1.5 1,-0.2 -1,-0.2 0.951 117.1 45.9 -49.7 -59.1 -9.5 -5.3 0.7 32 33 A S H < S+ 0 0 5 -4,-2.3 6,-0.3 2,-0.2 -2,-0.2 0.774 114.4 47.3 -64.5 -31.7 -9.5 -5.0 -3.2 33 34 A L H >< S+ 0 0 3 -4,-2.9 3,-2.0 2,-0.2 5,-0.2 0.878 108.9 53.7 -76.1 -40.3 -6.7 -7.6 -3.6 34 35 A R H 3< S+ 0 0 172 -4,-2.6 -2,-0.2 -5,-0.4 -1,-0.2 0.782 98.7 65.1 -63.4 -24.8 -8.5 -10.0 -1.2 35 36 A Q T 3< S- 0 0 128 -4,-1.5 2,-1.7 -5,-0.2 -1,-0.3 0.386 104.0-142.3 -73.4 0.2 -11.5 -9.5 -3.5 36 37 A G S < S+ 0 0 36 -3,-2.0 27,-0.4 1,-0.2 -1,-0.1 -0.088 73.6 100.8 75.6 -38.0 -9.2 -11.3 -6.1 37 38 A K + 0 0 112 -2,-1.7 -1,-0.2 -5,-0.2 -4,-0.1 0.256 53.9 112.7 -75.0 11.7 -10.1 -9.2 -9.3 38 39 A S - 0 0 0 -6,-0.3 54,-0.3 -5,-0.2 25,-0.2 -0.215 38.9-178.6 -66.9 169.8 -6.9 -7.0 -9.2 39 40 A K + 0 0 86 52,-2.4 26,-2.2 1,-0.3 2,-0.3 0.520 65.2 27.2-139.4 -29.2 -4.1 -7.2 -11.9 40 41 A L E -bC 65 91A 2 51,-1.9 51,-3.1 24,-0.2 2,-0.4 -0.994 58.3-167.9-142.5 127.2 -1.3 -4.7 -10.9 41 42 A I E -bC 66 90A 0 24,-3.0 26,-2.5 -2,-0.3 2,-0.4 -0.933 6.5-158.0-111.0 142.9 -0.2 -3.3 -7.5 42 43 A I E -bC 67 89A 0 47,-2.8 47,-2.5 -2,-0.4 2,-0.5 -0.967 4.1-164.6-116.5 137.3 2.2 -0.4 -7.0 43 44 A I E +bC 68 88A 0 24,-2.1 26,-2.4 -2,-0.4 45,-0.2 -0.889 26.9 150.4-122.6 95.0 4.2 0.2 -3.8 44 45 A A E + C 0 87A 0 43,-2.2 43,-1.8 -2,-0.5 2,-0.3 -0.568 50.9 93.3-114.5 57.9 5.5 3.8 -3.7 45 46 A A S S- 0 0 7 41,-0.2 2,-2.0 42,-0.2 29,-0.1 -0.981 94.9 -89.5-149.5 148.6 5.5 4.1 0.2 46 47 A N + 0 0 113 -2,-0.3 -2,-0.1 27,-0.3 40,-0.0 -0.360 63.2 170.8 -61.9 75.4 8.0 3.4 3.0 47 48 A T - 0 0 13 -2,-2.0 -2,-0.1 -4,-0.1 23,-0.0 -0.859 22.7-145.9-105.3 107.4 6.9 -0.3 3.2 48 49 A P > - 0 0 88 0, 0.0 4,-2.9 0, 0.0 3,-0.5 -0.238 35.0 -90.2 -72.5 168.1 9.0 -2.7 5.5 49 50 A V H > S+ 0 0 104 1,-0.3 4,-2.8 2,-0.2 5,-0.1 0.817 124.2 43.4 -50.3 -51.3 9.5 -6.4 4.6 50 51 A L H > S+ 0 0 143 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.884 116.5 48.9 -64.7 -37.5 6.5 -7.9 6.5 51 52 A R H > S+ 0 0 115 -3,-0.5 4,-1.9 2,-0.2 -2,-0.2 0.932 115.1 42.9 -69.7 -46.4 4.2 -5.1 5.1 52 53 A K H X S+ 0 0 55 -4,-2.9 4,-3.2 1,-0.2 5,-0.2 0.943 111.4 57.4 -62.7 -44.4 5.4 -5.5 1.5 53 54 A S H X S+ 0 0 45 -4,-2.8 4,-2.3 -5,-0.3 -2,-0.2 0.839 105.4 49.9 -56.9 -39.9 5.2 -9.4 2.0 54 55 A E H X S+ 0 0 49 -4,-1.9 4,-2.3 2,-0.2 -1,-0.2 0.945 114.3 43.3 -64.1 -47.9 1.5 -9.1 2.9 55 56 A L H X S+ 0 0 0 -4,-1.9 4,-2.6 2,-0.2 -2,-0.2 0.925 115.5 50.1 -60.0 -43.5 0.7 -7.0 -0.2 56 57 A E H X S+ 0 0 62 -4,-3.2 4,-0.6 2,-0.2 -2,-0.2 0.849 107.7 54.4 -61.0 -38.9 2.9 -9.3 -2.2 57 58 A Y H >X S+ 0 0 135 -4,-2.3 4,-2.7 -5,-0.2 3,-0.7 0.927 110.6 44.8 -62.4 -47.1 1.0 -12.3 -0.7 58 59 A Y H 3X S+ 0 0 17 -4,-2.3 4,-2.7 1,-0.2 -2,-0.2 0.901 110.8 54.0 -66.3 -37.5 -2.3 -10.8 -1.9 59 60 A A H 3<>S+ 0 0 5 -4,-2.6 5,-1.4 1,-0.2 -1,-0.2 0.612 113.3 44.7 -65.0 -16.3 -0.7 -10.1 -5.3 60 61 A M H <<5S+ 0 0 112 -3,-0.7 -2,-0.2 -4,-0.6 -1,-0.2 0.799 114.5 46.2 -90.7 -43.9 0.2 -13.9 -5.3 61 62 A L H <5S+ 0 0 99 -4,-2.7 -2,-0.2 -5,-0.1 -3,-0.2 0.988 114.6 52.0 -59.4 -63.4 -3.3 -15.1 -4.2 62 63 A S T <5S- 0 0 7 -4,-2.7 2,-1.8 -5,-0.1 -25,-0.1 -0.497 108.3-110.4 -63.5 143.2 -4.9 -12.8 -6.7 63 64 A K T 5S+ 0 0 156 -27,-0.4 2,-0.2 -25,-0.2 -3,-0.1 -0.621 75.5 132.9 -83.7 83.9 -3.4 -13.4 -10.1 64 65 A T < - 0 0 26 -2,-1.8 2,-0.4 -5,-1.4 -24,-0.2 -0.775 55.8-118.5-131.4 163.5 -1.7 -10.0 -10.1 65 66 A K E -b 40 0A 83 -26,-2.2 -24,-3.0 -2,-0.2 2,-0.4 -0.925 19.8-142.1-109.6 139.6 1.7 -8.2 -10.7 66 67 A V E -b 41 0A 35 -2,-0.4 2,-0.5 -26,-0.2 -24,-0.2 -0.881 13.8-170.1 -96.7 130.3 3.8 -6.3 -8.0 67 68 A Y E -b 42 0A 23 -26,-2.5 -24,-2.1 -2,-0.4 2,-0.5 -0.948 11.3-150.0-122.0 109.9 5.6 -3.1 -9.1 68 69 A Y E +b 43 0A 65 -2,-0.5 -24,-0.2 -26,-0.2 -26,-0.1 -0.691 30.1 158.5 -78.4 122.6 8.0 -1.6 -6.6 69 70 A F + 0 0 0 -26,-2.4 2,-2.5 -2,-0.5 7,-0.2 -0.258 18.5 156.3-127.5 34.6 8.3 2.2 -6.9 70 71 A Q + 0 0 81 1,-0.2 -26,-0.2 -26,-0.1 -2,-0.1 -0.348 5.2 158.6 -76.2 68.3 9.6 2.6 -3.3 71 72 A G - 0 0 44 -2,-2.5 -1,-0.2 1,-0.1 -27,-0.1 0.448 57.2-120.8 -65.1 -4.8 11.4 5.9 -3.6 72 73 A G S S+ 0 0 24 1,-0.2 -2,-0.1 -3,-0.1 -1,-0.1 0.570 93.8 55.4 72.5 9.9 11.1 6.2 0.2 73 74 A N S S- 0 0 115 12,-0.1 -27,-0.3 14,-0.0 -1,-0.2 0.424 111.8 -71.9-131.3 -88.7 9.2 9.5 -0.1 74 75 A N >> + 0 0 41 12,-0.1 3,-2.2 -29,-0.1 4,-0.5 0.276 62.8 145.5-170.4 13.9 5.9 10.1 -2.2 75 76 A E T 34 S+ 0 0 50 1,-0.3 3,-0.3 2,-0.2 4,-0.3 0.650 76.4 47.4 -56.4 -28.7 6.7 10.0 -6.0 76 77 A L T >> S+ 0 0 0 -32,-0.3 4,-2.2 9,-0.2 3,-0.6 0.630 88.9 82.3 -87.2 -15.3 3.4 8.3 -7.2 77 78 A G H <>>S+ 0 0 0 -3,-2.2 5,-3.1 8,-0.3 4,-0.5 0.866 84.3 66.9 -51.5 -36.1 1.2 10.7 -5.0 78 79 A T H 3<5S+ 0 0 87 -4,-0.5 -1,-0.2 -3,-0.3 -2,-0.2 0.898 107.9 34.4 -43.3 -58.8 1.8 13.0 -8.1 79 80 A A H <45S+ 0 0 9 -3,-0.6 -2,-0.2 -4,-0.3 -1,-0.2 0.937 126.4 34.9 -67.8 -51.3 -0.2 10.7 -10.4 80 81 A V H <5S- 0 0 15 -4,-2.2 -3,-0.2 1,-0.1 -2,-0.1 0.997 131.4 -16.1 -80.6 -70.6 -2.9 9.4 -7.9 81 82 A G T <5 - 0 0 25 -4,-0.5 2,-2.1 3,-0.2 -3,-0.2 0.468 61.1-150.1-125.4 -5.0 -4.2 11.9 -5.2 82 83 A K S > + 0 0 70 -2,-0.3 3,-2.5 1,-0.2 4,-1.6 0.072 68.7 133.7 -52.1 12.1 -2.5 -1.1 -21.7 99 100 A I H >> S+ 0 0 0 -2,-1.2 4,-2.2 1,-0.3 3,-1.0 0.870 70.4 50.1 -48.5 -56.2 -0.6 -0.6 -18.3 100 101 A L H 34 S+ 0 0 49 -3,-0.4 -1,-0.3 1,-0.2 -2,-0.1 0.542 118.8 40.2 -60.8 -10.0 -1.4 -4.1 -16.8 101 102 A T H <4 S+ 0 0 111 -3,-2.5 -1,-0.2 3,-0.1 -2,-0.2 0.543 128.4 28.9-109.0 -14.4 -0.2 -5.7 -20.1 102 103 A T H << S+ 0 0 86 -4,-1.6 2,-1.0 -3,-1.0 -3,-0.2 0.768 120.4 48.9-107.6 -47.3 2.9 -3.4 -20.9 103 104 A L < 0 0 33 -4,-2.2 -1,-0.1 -5,-0.3 -4,-0.1 -0.245 360.0 360.0 -77.2 38.7 4.0 -2.4 -17.3 104 105 A A 0 0 80 -2,-1.0 -2,-0.1 -3,-0.1 -3,-0.1 0.748 360.0 360.0 -97.4 360.0 3.7 -6.2 -16.7