==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION/DNA 23-APR-99 1CKT . COMPND 2 MOLECULE: DNA (5'-D(*CP*CP*(5IU) . SOURCE 2 SYNTHETIC: YES; . AUTHOR U.-M.OHNDORF,M.A.ROULD,C.O.PABO,S.J.LIPPARD . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5384.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 73.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 59.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 7 A K 0 0 128 0, 0.0 3,-0.1 0, 0.0 67,-0.1 0.000 360.0 360.0 360.0 98.3 36.3 0.3 4.3 2 8 A P - 0 0 31 0, 0.0 62,-0.0 0, 0.0 69,-0.0 -0.355 360.0-103.4 -60.2 135.6 36.4 -3.5 4.4 3 9 A R - 0 0 60 1,-0.1 2,-0.2 -2,-0.0 64,-0.1 -0.172 40.6-103.5 -57.6 153.1 34.1 -4.8 7.1 4 10 A G - 0 0 55 1,-0.2 -1,-0.1 -3,-0.1 57,-0.0 -0.546 46.3 -83.4 -81.5 153.3 35.9 -6.1 10.3 5 11 A K - 0 0 114 -2,-0.2 2,-0.5 1,-0.1 -1,-0.2 -0.014 36.7-136.2 -51.8 157.5 36.3 -9.8 11.0 6 12 A M - 0 0 44 51,-0.2 54,-0.2 50,-0.1 -1,-0.1 -0.977 18.2-140.3-124.2 115.1 33.5 -11.7 12.5 7 13 A S > - 0 0 65 -2,-0.5 4,-2.4 1,-0.1 5,-0.2 -0.083 30.1-101.3 -65.0 171.8 34.5 -14.0 15.3 8 14 A S H > S+ 0 0 27 1,-0.2 4,-2.5 2,-0.2 5,-0.1 0.880 127.1 51.6 -62.1 -38.0 32.9 -17.5 15.8 9 15 A Y H > S+ 0 0 69 2,-0.2 4,-2.3 1,-0.2 5,-0.2 0.882 106.5 51.8 -67.2 -39.4 30.8 -15.9 18.5 10 16 A A H > S+ 0 0 34 1,-0.2 4,-1.6 2,-0.2 -2,-0.2 0.944 113.4 45.7 -62.6 -44.9 29.7 -13.1 16.3 11 17 A F H X S+ 0 0 26 -4,-2.4 4,-2.6 1,-0.2 -2,-0.2 0.908 111.4 53.4 -63.4 -41.3 28.6 -15.7 13.7 12 18 A F H X S+ 0 0 3 -4,-2.5 4,-2.0 1,-0.2 -1,-0.2 0.858 109.8 46.0 -61.5 -39.3 27.0 -17.8 16.5 13 19 A V H X S+ 0 0 37 -4,-2.3 4,-1.5 2,-0.2 -1,-0.2 0.807 112.0 51.5 -74.5 -31.2 24.8 -14.9 17.8 14 20 A Q H X S+ 0 0 88 -4,-1.6 4,-1.5 -5,-0.2 -2,-0.2 0.945 113.6 45.2 -68.5 -45.8 23.8 -13.9 14.2 15 21 A T H X S+ 0 0 20 -4,-2.6 4,-2.5 1,-0.2 -2,-0.2 0.843 110.0 53.6 -65.8 -37.5 22.8 -17.5 13.7 16 22 A C H X S+ 0 0 8 -4,-2.0 4,-1.3 1,-0.2 -1,-0.2 0.850 111.0 48.0 -66.7 -33.3 21.0 -17.7 17.0 17 23 A R H X S+ 0 0 63 -4,-1.5 4,-1.3 2,-0.2 -2,-0.2 0.770 111.1 48.8 -77.4 -29.8 19.0 -14.7 16.0 18 24 A E H X S+ 0 0 108 -4,-1.5 4,-2.3 2,-0.2 3,-0.3 0.966 114.9 46.3 -72.4 -45.1 18.2 -16.0 12.6 19 25 A E H X S+ 0 0 93 -4,-2.5 4,-0.7 1,-0.2 -2,-0.2 0.740 113.4 48.4 -65.6 -33.1 17.1 -19.3 14.2 20 26 A H H X S+ 0 0 75 -4,-1.3 4,-0.6 -5,-0.2 -1,-0.2 0.777 111.3 49.8 -78.9 -33.6 15.0 -17.5 16.9 21 27 A K H >< S+ 0 0 110 -4,-1.3 3,-0.7 -3,-0.3 -2,-0.2 0.924 104.1 56.5 -71.6 -48.6 13.3 -15.2 14.5 22 28 A K H 3< S+ 0 0 83 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.841 116.3 37.3 -56.5 -34.3 12.1 -17.9 12.1 23 29 A K H 3< S+ 0 0 102 -4,-0.7 -1,-0.3 1,-0.2 -2,-0.2 0.589 131.5 29.8 -94.7 -10.8 10.4 -19.7 14.8 24 30 A H X< + 0 0 34 -3,-0.7 3,-2.1 -4,-0.6 -1,-0.2 -0.546 64.3 167.8-145.5 71.5 9.2 -16.6 16.7 25 31 A P T 3 S+ 0 0 109 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 0.326 74.6 72.0 -69.7 10.3 8.7 -13.9 14.0 26 32 A D T 3 S+ 0 0 101 -5,-0.1 -5,-0.1 0, 0.0 -2,-0.0 0.565 76.9 160.2 -99.3 -11.0 6.9 -11.9 16.7 27 33 A A < - 0 0 30 -3,-2.1 -6,-0.0 -6,-0.2 -3,-0.0 0.316 31.3-175.6 -20.8 116.8 10.3 -11.3 18.4 28 34 A S - 0 0 102 2,-0.0 -1,-0.1 0, 0.0 0, 0.0 0.974 24.8-169.7 -78.3 -61.9 10.7 -8.4 20.9 29 35 A V - 0 0 61 1,-0.1 2,-0.6 4,-0.0 3,-0.1 0.922 11.1-150.9 67.4 101.3 14.4 -9.0 21.4 30 36 A N > - 0 0 77 1,-0.1 4,-3.1 2,-0.0 5,-0.4 -0.916 14.5-135.0-105.5 120.0 16.1 -7.0 24.3 31 37 A F H > S+ 0 0 198 -2,-0.6 4,-1.3 1,-0.2 5,-0.1 0.808 103.4 41.4 -32.7 -55.1 19.8 -6.2 23.8 32 38 A S H > S+ 0 0 67 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.897 118.8 42.8 -70.0 -43.7 20.7 -7.3 27.3 33 39 A E H > S+ 0 0 112 -3,-0.2 4,-1.5 2,-0.2 -2,-0.2 0.752 112.7 51.1 -80.1 -20.2 18.6 -10.4 27.6 34 40 A F H X S+ 0 0 32 -4,-3.1 4,-1.4 2,-0.2 -1,-0.2 0.869 112.6 48.4 -78.8 -36.5 19.4 -11.7 24.1 35 41 A S H X S+ 0 0 64 -4,-1.3 4,-2.3 -5,-0.4 5,-0.2 0.932 110.3 51.0 -64.4 -52.5 23.1 -11.3 24.7 36 42 A K H X S+ 0 0 111 -4,-2.1 4,-1.6 1,-0.2 3,-0.4 0.978 113.3 43.1 -52.4 -57.7 23.0 -13.0 28.1 37 43 A K H X S+ 0 0 102 -4,-1.5 4,-1.2 1,-0.3 -1,-0.2 0.736 111.0 54.6 -66.2 -21.8 21.2 -16.1 26.8 38 44 A C H X S+ 0 0 4 -4,-1.4 4,-1.9 1,-0.2 -1,-0.3 0.896 114.4 41.8 -73.8 -40.9 23.3 -16.4 23.7 39 45 A S H X S+ 0 0 44 -4,-2.3 4,-0.6 -3,-0.4 -2,-0.2 0.691 110.1 56.7 -79.0 -17.0 26.4 -16.4 25.8 40 46 A E H X S+ 0 0 106 -4,-1.6 4,-0.6 -5,-0.2 -1,-0.2 0.799 112.7 44.1 -77.7 -28.7 24.7 -18.7 28.4 41 47 A R H >< S+ 0 0 110 -4,-1.2 3,-0.5 -5,-0.2 -2,-0.2 0.830 104.0 61.4 -80.6 -37.2 24.2 -21.1 25.5 42 48 A W H >< S+ 0 0 38 -4,-1.9 3,-0.7 1,-0.3 -1,-0.2 0.766 102.0 56.6 -62.1 -26.2 27.7 -20.7 24.1 43 49 A K H 3< S+ 0 0 164 -4,-0.6 -1,-0.3 1,-0.2 -2,-0.2 0.827 102.1 52.1 -72.4 -42.1 28.9 -22.1 27.4 44 50 A T T << S+ 0 0 107 -4,-0.6 2,-0.3 -3,-0.5 -1,-0.2 0.263 93.7 99.4 -80.2 10.1 27.0 -25.3 27.1 45 51 A M < - 0 0 24 -3,-0.7 2,-0.2 -4,-0.1 -3,-0.0 -0.744 69.7-125.6 -99.5 150.3 28.3 -25.9 23.7 46 52 A S >> - 0 0 61 -2,-0.3 3,-2.9 1,-0.1 4,-2.4 -0.622 30.4 -95.1 -99.4 158.2 31.2 -28.2 22.9 47 53 A A T 34 S+ 0 0 72 1,-0.3 -1,-0.1 -2,-0.2 -2,-0.0 0.594 127.4 30.4 -39.6 -24.6 34.5 -27.7 21.1 48 54 A K T 34 S+ 0 0 176 2,-0.2 4,-0.5 3,-0.1 -1,-0.3 0.444 107.2 65.2-118.2 -6.2 32.9 -29.0 18.0 49 55 A E T <4 S+ 0 0 106 -3,-2.9 3,-0.2 1,-0.1 -2,-0.2 0.752 112.8 44.1 -75.5 -27.4 29.3 -28.0 18.4 50 56 A K S >X S+ 0 0 51 -4,-2.4 3,-2.2 1,-0.2 4,-1.1 0.698 93.4 82.3 -81.0 -32.3 31.2 -24.6 18.1 51 57 A G H 3> S+ 0 0 10 -5,-0.4 4,-2.0 1,-0.3 5,-0.2 0.810 79.1 65.8 -44.1 -40.8 33.3 -25.8 15.2 52 58 A K H 3> S+ 0 0 112 -4,-0.5 4,-0.8 -3,-0.2 -1,-0.3 0.820 109.8 40.3 -52.3 -31.2 30.6 -25.0 12.8 53 59 A F H <> S+ 0 0 8 -3,-2.2 4,-1.3 2,-0.2 -1,-0.2 0.687 107.1 56.9 -94.7 -26.0 31.1 -21.4 13.7 54 60 A E H X S+ 0 0 77 -4,-1.1 4,-2.4 -3,-0.2 -2,-0.2 0.822 106.2 55.1 -74.7 -28.5 34.9 -21.1 14.0 55 61 A D H X S+ 0 0 115 -4,-2.0 4,-1.9 2,-0.2 -2,-0.2 0.933 105.7 49.8 -66.2 -47.1 34.9 -22.3 10.5 56 62 A M H X S+ 0 0 61 -4,-0.8 4,-1.8 1,-0.2 -1,-0.2 0.808 113.4 48.6 -60.9 -32.4 32.7 -19.5 9.4 57 63 A A H X S+ 0 0 17 -4,-1.3 4,-1.2 2,-0.2 -51,-0.2 0.859 107.3 52.3 -74.7 -40.2 35.1 -17.2 11.3 58 64 A K H X S+ 0 0 59 -4,-2.4 4,-1.5 2,-0.2 -2,-0.2 0.814 111.7 50.2 -63.8 -30.7 38.2 -18.6 9.6 59 65 A A H X S+ 0 0 62 -4,-1.9 4,-1.6 2,-0.2 -2,-0.2 0.921 111.7 44.7 -72.0 -48.9 36.5 -18.0 6.3 60 66 A D H X S+ 0 0 25 -4,-1.8 4,-1.6 1,-0.2 -2,-0.2 0.652 108.1 60.1 -71.8 -15.7 35.6 -14.4 7.2 61 67 A K H X S+ 0 0 87 -4,-1.2 4,-1.6 2,-0.2 -1,-0.2 0.921 106.7 45.8 -73.6 -44.6 39.1 -14.0 8.5 62 68 A A H X S+ 0 0 51 -4,-1.5 4,-1.8 1,-0.2 -2,-0.2 0.814 108.9 57.9 -66.1 -31.6 40.5 -14.9 5.0 63 69 A R H X S+ 0 0 51 -4,-1.6 4,-1.8 1,-0.2 5,-0.3 0.940 103.7 51.0 -64.8 -46.0 37.9 -12.5 3.5 64 70 A Y H X S+ 0 0 73 -4,-1.6 4,-2.4 1,-0.2 -2,-0.2 0.890 110.0 48.1 -58.4 -47.9 39.2 -9.6 5.5 65 71 A E H X S+ 0 0 91 -4,-1.6 4,-1.6 1,-0.2 -1,-0.2 0.916 110.6 52.9 -60.2 -42.7 42.8 -10.1 4.5 66 72 A R H < S+ 0 0 156 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.805 115.0 39.4 -64.2 -36.1 41.8 -10.4 0.8 67 73 A E H >< S+ 0 0 67 -4,-1.8 3,-1.3 1,-0.2 4,-0.4 0.801 111.0 61.9 -81.9 -30.9 39.9 -7.2 0.8 68 74 A M H >< S+ 0 0 51 -4,-2.4 3,-1.0 1,-0.3 -2,-0.2 0.797 89.2 67.9 -64.8 -30.7 42.6 -5.6 3.0 69 75 A K T 3< S+ 0 0 179 -4,-1.6 -1,-0.3 1,-0.3 -2,-0.1 0.366 106.6 41.2 -76.5 9.8 45.2 -6.1 0.3 70 76 A T T < 0 0 130 -3,-1.3 -1,-0.3 0, 0.0 -2,-0.2 0.361 360.0 360.0-132.1 -5.6 43.5 -3.5 -1.9 71 77 A Y < 0 0 196 -3,-1.0 -3,-0.1 -4,-0.4 -2,-0.1 0.782 360.0 360.0 -97.5 360.0 42.5 -0.9 0.6