==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 14-APR-06 2CKA . COMPND 2 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 8; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR E.AB,R.N.DE JONG,T.DIERCKS,J.XIAOYUN,M.DANIELS,R.KAPTEIN, . 58 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4996.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 34 58.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 15.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 25.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2028 A L 0 0 211 0, 0.0 2,-0.2 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 79.5 4.4 -14.6 2.4 2 2029 A D - 0 0 106 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.726 360.0 -89.7-160.6-160.1 5.4 -11.0 2.3 3 2030 A V - 0 0 30 -2,-0.2 4,-0.4 4,-0.0 25,-0.1 0.559 50.4-141.7-102.8 -21.1 4.4 -8.2 0.1 4 2031 A D - 0 0 115 1,-0.2 2,-1.6 2,-0.1 25,-0.1 0.409 27.1-114.7 75.0 2.9 7.3 -9.2 -2.2 5 2032 A L S S+ 0 0 92 1,-0.2 24,-1.8 23,-0.1 23,-0.5 -0.024 102.7 81.4 70.3 -31.8 8.2 -5.5 -2.9 6 2033 A E S S+ 0 0 153 -2,-1.6 -1,-0.2 22,-0.2 -2,-0.1 0.575 71.3 105.3 -81.5 -7.3 7.4 -5.4 -6.7 7 2034 A T S S- 0 0 56 -4,-0.4 21,-2.8 20,-0.1 2,-0.6 -0.199 78.1-113.6 -68.5 162.0 3.8 -5.0 -5.9 8 2035 A R B -A 27 0A 72 19,-0.2 19,-0.2 20,-0.1 14,-0.2 -0.893 25.8-148.6-100.5 118.1 2.0 -1.6 -6.4 9 2036 A I - 0 0 0 17,-1.8 2,-0.3 -2,-0.6 11,-0.1 -0.820 13.0-132.2 -89.0 119.3 0.9 -0.1 -3.1 10 2037 A P - 0 0 22 0, 0.0 34,-2.9 0, 0.0 2,-0.4 -0.552 31.0-167.7 -66.8 126.5 -2.3 2.0 -3.4 11 2038 A V E -BC 20 43B 0 9,-1.3 9,-3.6 -2,-0.3 2,-0.4 -0.905 11.0-157.8-121.2 150.4 -1.6 5.2 -1.6 12 2039 A I E -BC 19 42B 38 30,-2.9 30,-2.1 -2,-0.4 2,-0.7 -0.980 22.7-123.4-130.1 136.4 -3.9 7.9 -0.6 13 2040 A N E > - C 0 41B 9 5,-2.7 4,-0.7 -2,-0.4 28,-0.3 -0.747 20.9-157.5 -77.5 115.9 -3.2 11.5 0.2 14 2041 A K T 4 S+ 0 0 132 26,-3.5 -1,-0.2 -2,-0.7 27,-0.1 0.628 88.6 44.1 -73.8 -14.5 -4.5 11.9 3.7 15 2042 A V T 4 S+ 0 0 118 25,-0.4 -1,-0.2 3,-0.1 26,-0.1 0.906 128.2 21.7 -91.5 -56.8 -4.9 15.7 3.4 16 2043 A D T 4 S- 0 0 117 2,-0.1 -2,-0.1 24,-0.1 -4,-0.0 0.985 94.5-125.0 -76.7 -63.5 -6.5 15.9 -0.1 17 2044 A G < + 0 0 40 -4,-0.7 -3,-0.1 1,-0.3 2,-0.0 0.194 51.6 151.7 130.8 -15.6 -8.0 12.5 -0.6 18 2045 A T - 0 0 67 -6,-0.1 -5,-2.7 1,-0.1 2,-0.5 -0.273 30.6-155.8 -50.4 119.5 -6.4 11.6 -3.9 19 2046 A L E -B 12 0B 87 -7,-0.2 2,-0.5 22,-0.1 -7,-0.3 -0.913 3.5-155.9-104.5 126.6 -6.2 7.8 -4.1 20 2047 A L E +B 11 0B 21 -9,-3.6 -9,-1.3 -2,-0.5 2,-0.3 -0.893 18.5 168.3-108.0 127.8 -3.5 6.4 -6.4 21 2048 A V > + 0 0 88 -2,-0.5 3,-1.3 -11,-0.2 4,-0.3 -0.879 45.2 11.7-132.5 165.0 -3.8 2.9 -7.9 22 2049 A G T 3 S- 0 0 43 -2,-0.3 3,-0.3 1,-0.2 -2,-0.0 -0.451 127.4 -21.9 72.6-137.5 -2.0 0.8 -10.5 23 2050 A E T 3 S+ 0 0 167 1,-0.2 -1,-0.2 -2,-0.2 4,-0.1 0.428 132.0 71.9 -88.7 1.4 1.2 2.2 -11.9 24 2051 A D S < S+ 0 0 117 -3,-1.3 -1,-0.2 2,-0.1 -2,-0.2 0.842 91.9 69.3 -77.4 -33.0 0.2 5.6 -10.7 25 2052 A A S S- 0 0 0 -3,-0.3 -4,-0.1 -4,-0.3 -6,-0.0 -0.581 99.2-106.9 -83.6 142.7 0.8 4.2 -7.3 26 2053 A P - 0 0 4 0, 0.0 -17,-1.8 0, 0.0 2,-0.2 -0.115 33.7 -93.4 -69.3 164.6 4.5 3.6 -6.5 27 2054 A R B > -A 8 0A 143 -19,-0.2 4,-2.3 1,-0.1 3,-0.4 -0.492 33.0-120.2 -71.3 150.7 6.3 0.2 -6.3 28 2055 A R H > S+ 0 0 74 -21,-2.8 4,-0.9 -23,-0.5 -22,-0.2 0.836 113.5 60.4 -62.4 -30.9 6.4 -1.2 -2.8 29 2056 A A H 4 S+ 0 0 57 -24,-1.8 4,-0.4 -22,-0.3 -1,-0.2 0.891 114.3 33.2 -63.3 -40.0 10.2 -1.1 -3.0 30 2057 A E H >> S+ 0 0 71 -3,-0.4 4,-2.9 -25,-0.2 3,-0.6 0.766 100.5 84.7 -87.8 -23.5 10.2 2.7 -3.6 31 2058 A L H 3X S+ 0 0 7 -4,-2.3 4,-2.8 1,-0.2 5,-0.3 0.797 82.6 59.6 -47.8 -42.8 7.2 3.2 -1.3 32 2059 A E H 3X S+ 0 0 129 -4,-0.9 4,-1.0 -3,-0.2 -1,-0.2 0.949 117.0 30.5 -54.6 -53.9 9.3 3.2 1.8 33 2060 A M H <> S+ 0 0 127 -3,-0.6 4,-1.4 -4,-0.4 -2,-0.2 0.834 115.5 62.3 -75.1 -32.7 11.4 6.2 0.7 34 2061 A W H X S+ 0 0 82 -4,-2.9 4,-1.2 1,-0.2 3,-0.3 0.912 105.3 45.0 -62.1 -45.4 8.5 7.7 -1.3 35 2062 A L H < S+ 0 0 37 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.808 106.1 62.1 -68.4 -32.8 6.3 8.1 1.8 36 2063 A Q H < S+ 0 0 144 -4,-1.0 -1,-0.2 -5,-0.3 -2,-0.2 0.854 104.6 48.1 -61.5 -34.0 9.3 9.6 3.7 37 2064 A G H < S+ 0 0 53 -4,-1.4 -1,-0.2 -3,-0.3 -2,-0.2 0.850 127.0 23.7 -75.8 -32.0 9.4 12.4 1.2 38 2065 A H >< - 0 0 104 -4,-1.2 3,-1.7 -5,-0.1 -1,-0.3 -0.806 57.7-179.3-140.8 90.5 5.7 13.1 1.4 39 2066 A P T 3 S+ 0 0 111 0, 0.0 -25,-0.1 0, 0.0 -3,-0.1 0.476 74.4 87.4 -68.7 -2.0 3.9 12.0 4.6 40 2067 A E T 3 S+ 0 0 80 -27,-0.1 -26,-3.5 -26,-0.1 -25,-0.4 0.836 85.0 62.5 -61.0 -36.4 0.8 13.4 2.9 41 2068 A F E < +C 13 0B 35 -3,-1.7 2,-0.3 -28,-0.3 -28,-0.2 -0.692 64.0 167.7 -95.0 146.0 0.4 10.1 1.4 42 2069 A A E -C 12 0B 25 -30,-2.1 -30,-2.9 -2,-0.3 2,-0.1 -0.877 44.2 -73.4-142.5 173.5 -0.1 6.9 3.3 43 2070 A V E -C 11 0B 31 -2,-0.3 -32,-0.3 -32,-0.2 5,-0.0 -0.360 57.8 -93.4 -71.8 149.9 -1.1 3.4 2.3 44 2071 A D >> - 0 0 27 -34,-2.9 4,-1.3 1,-0.2 3,-0.7 -0.526 28.9-144.8 -63.6 122.5 -4.7 2.7 1.3 45 2072 A P H 3> S+ 0 0 72 0, 0.0 4,-2.1 0, 0.0 -1,-0.2 0.778 100.1 58.1 -62.5 -26.0 -6.5 1.6 4.5 46 2073 A R H 3> S+ 0 0 189 2,-0.2 4,-1.7 1,-0.2 5,-0.1 0.822 101.6 54.9 -74.5 -29.1 -8.6 -0.8 2.4 47 2074 A F H <> S+ 0 0 34 -3,-0.7 4,-1.2 2,-0.2 -1,-0.2 0.842 108.0 49.7 -68.3 -32.8 -5.4 -2.4 1.3 48 2075 A L H X S+ 0 0 86 -4,-1.3 4,-1.5 2,-0.2 3,-0.3 0.908 109.1 50.8 -70.0 -39.1 -4.7 -2.9 5.0 49 2076 A A H X S+ 0 0 38 -4,-2.1 4,-2.2 1,-0.2 -2,-0.2 0.817 105.5 57.4 -64.7 -30.5 -8.2 -4.3 5.4 50 2077 A Y H X S+ 0 0 116 -4,-1.7 4,-2.0 2,-0.2 -1,-0.2 0.832 105.0 50.0 -67.7 -33.9 -7.2 -6.6 2.5 51 2078 A M H < S+ 0 0 60 -4,-1.2 -2,-0.2 -3,-0.3 -1,-0.2 0.793 108.7 51.9 -74.0 -29.2 -4.3 -7.8 4.6 52 2079 A E H < S+ 0 0 140 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.888 109.8 50.6 -66.9 -41.2 -6.7 -8.3 7.4 53 2080 A D H < S+ 0 0 101 -4,-2.2 2,-0.7 -5,-0.1 -2,-0.2 0.886 93.6 83.9 -62.5 -42.6 -8.8 -10.3 4.9 54 2081 A R < + 0 0 131 -4,-2.0 2,-0.3 -5,-0.1 -1,-0.0 -0.537 64.9 161.6 -68.9 109.0 -5.7 -12.3 4.0 55 2082 A R - 0 0 176 -2,-0.7 3,-0.1 1,-0.1 -2,-0.1 -0.809 39.6-150.1-129.7 168.4 -5.5 -15.0 6.6 56 2083 A K S S+ 0 0 193 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.509 77.2 31.8-120.3 -13.2 -3.8 -18.4 6.9 57 2084 A Q 0 0 157 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.944 360.0 360.0-140.8 161.0 -6.1 -20.4 9.1 58 2085 A K 0 0 261 -2,-0.3 0, 0.0 -3,-0.1 0, 0.0 -0.834 360.0 360.0 -92.2 360.0 -9.8 -20.6 9.8