==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 06-MAY-99 1CL4 . COMPND 2 MOLECULE: PROTEIN (GAG POLYPROTEIN); . SOURCE 2 ORGANISM_SCIENTIFIC: MASON-PFIZER MONKEY VIRUS; . AUTHOR Y.GAO,K.KALUARACHCHI,D.P.GIEDROC . 32 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2876.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 7 21.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 49 A V 0 0 191 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 56.6 53.2 -4.8 4.3 2 50 A P + 0 0 71 0, 0.0 3,-0.1 0, 0.0 12,-0.1 -0.439 360.0 179.1 -79.9 152.9 49.7 -5.6 5.7 3 51 A G + 0 0 34 1,-0.2 8,-0.0 -2,-0.1 10,-0.0 -0.107 50.1 34.0-127.8-135.3 47.2 -7.4 3.4 4 52 A L S S- 0 0 77 8,-0.3 8,-0.3 1,-0.1 -1,-0.2 0.080 98.5-101.6 -31.1 94.6 43.6 -8.7 3.6 5 53 A C - 0 0 1 6,-1.4 9,-0.2 1,-0.2 6,-0.1 0.199 21.1-133.4 -22.4 130.5 42.3 -6.1 5.9 6 54 A P S S+ 0 0 111 0, 0.0 -1,-0.2 0, 0.0 8,-0.1 0.289 104.5 46.6 -78.6 10.4 42.0 -7.4 9.5 7 55 A R S S+ 0 0 159 6,-0.2 -2,-0.1 19,-0.0 2,-0.1 0.681 122.4 14.6-119.4 -42.8 38.5 -5.9 9.7 8 56 A C - 0 0 4 3,-0.1 19,-0.1 20,-0.1 7,-0.0 -0.079 65.7-132.6-110.9-145.1 36.8 -7.0 6.5 9 57 A K S S+ 0 0 86 23,-0.1 -5,-0.1 -2,-0.1 3,-0.1 0.134 87.2 72.9-161.0 18.9 37.7 -9.6 3.8 10 58 A R S S+ 0 0 174 -5,-0.0 2,-0.3 19,-0.0 11,-0.1 0.089 95.7 43.2-127.9 23.5 37.4 -7.8 0.5 11 59 A G - 0 0 19 -6,-0.1 -6,-1.4 2,-0.1 -3,-0.1 -0.982 68.6-130.7-158.0 165.8 40.4 -5.6 0.6 12 60 A K S S+ 0 0 155 -8,-0.3 -8,-0.3 -2,-0.3 2,-0.2 -0.400 72.0 98.3-119.3 54.6 44.1 -5.7 1.5 13 61 A H S S- 0 0 38 -2,-0.1 -6,-0.2 1,-0.0 2,-0.2 -0.621 72.1 -89.4-129.9-173.1 44.3 -2.6 3.8 14 62 A W - 0 0 109 3,-0.3 3,-0.3 -2,-0.2 -9,-0.1 -0.634 38.9-104.7-101.3 160.6 44.2 -1.6 7.4 15 63 A A S > S+ 0 0 40 1,-0.2 3,-1.2 -2,-0.2 -1,-0.1 0.960 119.3 52.2 -47.0 -69.2 41.2 -0.7 9.6 16 64 A N T 3 S+ 0 0 177 1,-0.3 2,-0.6 -3,-0.0 -1,-0.2 0.868 119.1 40.4 -38.1 -41.7 41.8 3.1 9.6 17 65 A E T 3 S+ 0 0 139 -3,-0.3 2,-0.4 2,-0.0 -1,-0.3 -0.481 96.0 114.8-106.9 62.7 41.9 2.8 5.8 18 66 A C < + 0 0 35 -3,-1.2 2,-0.2 -2,-0.6 -3,-0.0 -0.990 27.4 162.9-134.3 140.7 39.1 0.2 5.3 19 67 A K - 0 0 172 -2,-0.4 2,-0.5 2,-0.0 8,-0.1 -0.690 18.0-162.7-158.1 94.1 35.7 0.5 3.6 20 68 A S > - 0 0 15 6,-0.7 2,-1.8 -2,-0.2 3,-0.6 -0.685 13.9-144.0 -83.5 123.2 34.0 -2.7 2.7 21 69 A K T 3 S+ 0 0 156 -2,-0.5 3,-0.1 1,-0.2 -1,-0.1 -0.542 71.2 99.3 -86.6 76.6 31.2 -2.4 0.2 22 70 A T T 3 S- 0 0 53 -2,-1.8 2,-0.2 1,-0.3 -1,-0.2 0.622 88.9 -20.4-127.2 -41.8 28.8 -5.1 1.7 23 71 A D S < S- 0 0 92 -3,-0.6 -1,-0.3 3,-0.1 6,-0.0 -0.666 75.1 -81.5-148.3-156.0 26.2 -3.2 3.7 24 72 A N S S+ 0 0 136 -2,-0.2 -3,-0.1 -3,-0.1 3,-0.1 -0.264 104.5 59.2-116.8 48.1 25.6 0.1 5.5 25 73 A Q S S- 0 0 119 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.274 106.0 -74.5-133.2 -95.2 27.4 -0.4 8.8 26 74 A G S S- 0 0 43 -7,-0.0 -6,-0.7 -19,-0.0 -4,-0.1 0.375 106.2 -0.7-141.0 -68.6 31.2 -1.2 8.9 27 75 A N + 0 0 68 -8,-0.1 -6,-0.1 1,-0.1 -3,-0.0 -0.684 60.0 158.1-136.2 83.4 32.1 -4.8 7.9 28 76 A P + 0 0 29 0, 0.0 -1,-0.1 0, 0.0 -20,-0.1 0.063 23.3 159.5 -89.7 20.8 29.0 -6.7 7.0 29 77 A I - 0 0 10 1,-0.2 -2,-0.1 2,-0.1 -7,-0.1 -0.267 35.3-149.9 -50.7 125.5 31.2 -9.0 5.0 30 78 A P S S+ 0 0 118 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 0.806 93.0 50.7 -71.4 -32.2 29.3 -12.3 4.6 31 79 A P 0 0 86 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.793 360.0 360.0 -77.2 -28.3 32.3 -14.6 4.5 32 80 A H 0 0 159 -25,-0.0 -23,-0.1 0, 0.0 -24,-0.1 -0.127 360.0 360.0-165.4 360.0 33.8 -13.1 7.7