==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEOTIDYL TRANSFERASE 09-OCT-95 1COO . COMPND 2 MOLECULE: RNA POLYMERASE ALPHA SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR Y.H.JEON,T.NEGISHI,M.SHIRAKAWA,T.YAMAZAKI,N.FUJITA,A.ISHIHAM . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5443.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 60.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 17.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 27.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 249 A F 0 0 132 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 161.9 88.2 -0.8 4.1 2 250 A D > - 0 0 39 1,-0.2 4,-2.0 60,-0.1 5,-0.1 -0.760 360.0-155.2 -89.9 128.5 86.0 0.5 1.3 3 251 A P H > S+ 0 0 85 0, 0.0 4,-2.2 0, 0.0 3,-0.2 0.981 95.8 49.3 -67.2 -58.3 84.1 3.7 2.0 4 252 A I H 4 S+ 0 0 22 1,-0.2 26,-0.3 2,-0.2 3,-0.2 0.928 110.5 55.8 -47.3 -42.8 81.3 3.2 -0.5 5 253 A L H 4 S+ 0 0 3 1,-0.2 26,-0.9 25,-0.1 -1,-0.2 0.954 105.4 48.6 -56.4 -50.1 81.0 -0.3 1.1 6 254 A L H < S+ 0 0 28 -4,-2.0 -1,-0.2 -3,-0.2 -2,-0.2 0.840 97.0 96.9 -60.7 -29.2 80.6 1.1 4.6 7 255 A R S < S- 0 0 121 -4,-2.2 23,-2.1 -3,-0.2 24,-0.5 -0.165 87.9-102.3 -59.4 157.7 77.9 3.4 3.1 8 256 A P B >> -A 29 0A 40 0, 0.0 4,-1.3 0, 0.0 3,-0.6 -0.651 24.3-123.0 -82.5 132.0 74.2 2.4 3.4 9 257 A V G >4>S+ 0 0 0 19,-0.6 3,-0.9 -2,-0.4 5,-0.6 0.895 114.6 58.3 -42.0 -43.0 72.7 1.0 0.1 10 258 A D G >45S+ 0 0 81 18,-0.5 3,-0.6 1,-0.3 -1,-0.3 0.962 118.3 28.6 -54.2 -52.8 70.1 3.8 0.4 11 259 A D G <45S+ 0 0 100 -3,-0.6 -1,-0.3 17,-0.3 -2,-0.2 0.353 90.5 105.9 -90.5 8.4 72.9 6.5 0.3 12 260 A L G <<5S- 0 0 15 -4,-1.3 -1,-0.2 -3,-0.9 -2,-0.2 0.716 90.0-125.4 -60.8 -14.5 75.2 4.2 -1.7 13 261 A E T < 5 + 0 0 177 -3,-0.6 -1,-0.1 -4,-0.3 -2,-0.1 0.818 66.0 134.7 74.9 27.8 74.2 6.6 -4.6 14 262 A L < - 0 0 40 -5,-0.6 -1,-0.1 1,-0.2 -4,-0.0 0.109 63.8 -57.6 -88.2-151.7 73.1 3.6 -6.7 15 263 A T > - 0 0 72 36,-0.1 5,-0.7 1,-0.1 4,-0.3 -0.026 52.0-106.3 -77.9-169.0 69.8 3.4 -8.7 16 264 A V T >S+ 0 0 117 3,-0.1 5,-0.5 2,-0.1 4,-0.1 0.835 117.9 36.7 -90.6 -36.1 66.4 3.9 -7.2 17 265 A R T 5S+ 0 0 133 3,-0.2 -1,-0.1 4,-0.1 34,-0.1 0.639 120.1 50.3 -90.4 -14.0 65.2 0.3 -7.3 18 266 A S T >5S+ 0 0 1 3,-0.1 4,-1.8 2,-0.1 5,-0.1 0.925 121.5 22.6 -86.4 -76.3 68.7 -1.1 -6.5 19 267 A A H >5S+ 0 0 2 -4,-0.3 4,-2.2 2,-0.2 3,-0.3 0.969 129.4 47.7 -56.1 -54.0 70.1 0.7 -3.4 20 268 A N H ><>S+ 0 0 1 -4,-1.8 5,-1.4 -3,-0.3 3,-1.4 0.944 101.6 48.6 -70.4 -45.2 68.4 -3.1 -1.0 23 271 A K H ><5S+ 0 0 99 -4,-2.2 3,-0.7 -3,-0.4 5,-0.3 0.766 106.4 59.9 -66.3 -20.6 67.7 -1.2 2.3 24 272 A A T 3<5S+ 0 0 76 -4,-1.2 -1,-0.3 -5,-0.3 -2,-0.2 0.663 96.7 61.3 -81.0 -13.9 64.1 -2.7 2.2 25 273 A E T < 5S- 0 0 63 -3,-1.4 -1,-0.2 -4,-0.5 -2,-0.1 -0.087 128.3 -92.2-102.2 36.6 65.6 -6.2 2.3 26 274 A A T < 5S+ 0 0 78 -3,-0.7 2,-0.2 1,-0.1 -3,-0.2 0.737 104.9 109.1 64.2 17.9 67.3 -5.8 5.7 27 275 A I < + 0 0 0 -5,-1.4 -18,-0.2 -6,-0.2 -3,-0.2 -0.486 24.1 147.6-122.9 63.9 70.4 -4.7 3.7 28 276 A H + 0 0 102 -5,-0.3 -19,-0.6 -2,-0.2 2,-0.5 0.581 64.5 69.6 -74.3 -5.0 70.7 -0.9 4.4 29 277 A Y B > S-A 8 0A 50 -21,-0.3 4,-2.3 -7,-0.2 3,-0.4 -0.942 76.2-145.1-114.7 125.9 74.5 -1.3 4.2 30 278 A I H > S+ 0 0 1 -23,-2.1 4,-2.4 -2,-0.5 5,-0.3 0.809 101.3 68.6 -59.9 -19.6 76.1 -2.1 0.9 31 279 A G H > S+ 0 0 0 -26,-0.9 4,-1.9 -24,-0.5 -1,-0.2 0.990 103.8 39.3 -61.2 -54.3 78.5 -4.2 3.0 32 280 A D H 4 S+ 0 0 42 -3,-0.4 -2,-0.2 2,-0.2 -1,-0.2 0.927 108.9 66.0 -60.5 -40.0 75.8 -6.7 3.8 33 281 A L H >< S+ 0 0 2 -4,-2.3 3,-1.1 1,-0.3 34,-0.3 0.958 108.0 36.7 -45.4 -63.2 74.6 -6.3 0.1 34 282 A V H 3< S+ 0 0 2 -4,-2.4 34,-1.1 1,-0.3 33,-0.9 0.846 111.7 64.5 -61.0 -27.7 77.8 -7.9 -1.2 35 283 A Q T 3< S+ 0 0 51 -4,-1.9 -1,-0.3 -5,-0.3 -2,-0.2 -0.047 102.2 59.5 -85.2 37.2 77.6 -10.1 1.9 36 284 A R S < S- 0 0 68 -3,-1.1 2,-0.3 -2,-0.4 31,-0.3 -0.356 92.8 -90.1-135.0-143.5 74.3 -11.6 0.5 37 285 A T > - 0 0 65 29,-0.1 4,-2.3 -2,-0.1 3,-0.5 -0.849 14.0-164.3-147.5 109.0 73.3 -13.5 -2.7 38 286 A E H > S+ 0 0 16 -2,-0.3 4,-1.8 1,-0.2 -1,-0.1 0.705 85.6 78.6 -65.1 -14.7 72.0 -11.8 -5.9 39 287 A V H 4 S+ 0 0 100 2,-0.2 -1,-0.2 1,-0.2 -2,-0.0 0.984 112.8 15.5 -58.4 -57.6 70.7 -15.2 -6.9 40 288 A E H >4 S+ 0 0 138 -3,-0.5 3,-1.5 1,-0.2 -2,-0.2 0.818 123.0 63.3 -87.1 -31.8 67.6 -15.0 -4.6 41 289 A L H >< S+ 0 0 6 -4,-2.3 3,-0.9 1,-0.3 -3,-0.2 0.866 100.2 55.0 -61.4 -32.5 67.8 -11.3 -4.0 42 290 A L T 3< S+ 0 0 24 -4,-1.8 -1,-0.3 -5,-0.2 -2,-0.1 0.011 103.2 58.7 -90.0 32.7 67.2 -10.7 -7.8 43 291 A K T < S+ 0 0 159 -3,-1.5 -1,-0.2 6,-0.0 -2,-0.2 0.189 75.0 119.7-141.9 14.9 64.0 -12.8 -7.7 44 292 A T S X S- 0 0 55 -3,-0.9 3,-1.2 1,-0.1 -3,-0.0 -0.364 78.3-105.5 -80.4 166.4 61.9 -10.9 -5.1 45 293 A P T 3 S+ 0 0 123 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.035 119.8 40.8 -79.8 28.2 58.5 -9.4 -5.9 46 294 A N T 3 S+ 0 0 124 2,-0.0 2,-0.1 -29,-0.0 -25,-0.0 0.094 101.1 79.1-160.7 25.2 60.1 -5.9 -5.9 47 295 A L < - 0 0 17 -3,-1.2 2,-0.3 -5,-0.0 -5,-0.1 -0.064 55.5-164.1-114.7-142.4 63.4 -6.4 -7.6 48 296 A G > - 0 0 20 1,-0.1 4,-0.7 -2,-0.1 -4,-0.1 -0.929 32.8-104.3 167.5 169.8 64.4 -6.6 -11.3 49 297 A K H >> S+ 0 0 176 -2,-0.3 4,-1.4 2,-0.2 3,-0.8 0.916 113.4 59.6 -84.6 -46.8 67.2 -7.7 -13.7 50 298 A K H 3> S+ 0 0 166 1,-0.3 4,-0.7 2,-0.2 -1,-0.2 0.788 105.1 55.4 -53.4 -21.8 68.4 -4.2 -14.7 51 299 A S H >> S+ 0 0 6 2,-0.2 4,-2.4 1,-0.2 3,-0.5 0.880 96.6 61.1 -79.9 -37.2 69.1 -3.8 -10.9 52 300 A L H S+ 0 0 3 -4,-2.2 5,-1.3 -5,-0.3 -2,-0.2 0.676 123.5 34.2 -73.7 -13.5 80.3 -5.8 -6.0 60 308 A A H ><5S+ 0 0 67 -4,-1.7 3,-0.6 -5,-0.2 -2,-0.2 0.563 109.8 62.3-114.2 -15.5 82.7 -5.8 -9.0 61 309 A S H 3<5S+ 0 0 64 -4,-1.1 -2,-0.2 -5,-0.3 -3,-0.1 0.510 111.5 39.8 -88.5 -2.2 83.7 -2.1 -9.0 62 310 A R T 3<5S- 0 0 96 -4,-0.6 -1,-0.2 -5,-0.0 -2,-0.1 -0.002 120.8 -97.6-133.0 30.2 85.2 -2.4 -5.5 63 311 A G T < 5S+ 0 0 70 -3,-0.6 -3,-0.2 1,-0.1 2,-0.2 0.953 81.5 136.6 54.7 50.0 86.9 -5.8 -5.7 64 312 A L < - 0 0 28 -5,-1.3 2,-0.3 -8,-0.1 -1,-0.1 -0.538 36.7-155.9-116.0-174.9 84.0 -7.5 -4.0 65 313 A S > - 0 0 56 -2,-0.2 3,-1.8 3,-0.1 2,-0.2 -0.972 35.7 -70.8-155.6 169.2 82.1 -10.8 -4.7 66 314 A L T 3 S- 0 0 88 -2,-0.3 3,-0.2 1,-0.3 -29,-0.1 -0.450 120.6 -4.9 -66.8 132.9 78.7 -12.5 -4.1 67 315 A G T 3 S+ 0 0 35 -33,-0.9 2,-2.0 -34,-0.3 -1,-0.3 0.755 88.9 169.9 55.7 18.7 78.3 -13.3 -0.4 68 316 A M < - 0 0 43 -3,-1.8 -1,-0.2 -34,-1.1 -3,-0.1 -0.384 33.1-136.6 -63.7 86.9 81.9 -12.1 -0.1 69 317 A R - 0 0 198 -2,-2.0 -1,-0.1 -3,-0.2 3,-0.1 -0.194 19.3-137.1 -46.8 125.6 81.9 -12.1 3.7 70 318 A L - 0 0 18 1,-0.1 3,-0.3 -39,-0.1 -1,-0.1 -0.248 25.5 -91.1 -79.6 175.7 83.6 -8.8 4.8 71 319 A E S S- 0 0 139 1,-0.2 2,-2.2 -2,-0.0 -1,-0.1 0.507 92.6 -26.8 -61.2-138.4 86.1 -8.6 7.6 72 320 A N S S- 0 0 143 -3,-0.1 -1,-0.2 0, 0.0 -3,-0.0 -0.498 97.0-126.9 -78.3 80.5 84.7 -7.9 11.0 73 321 A W S S+ 0 0 58 -2,-2.2 3,-0.0 -3,-0.3 -67,-0.0 -0.586 84.2 40.3 -80.6 141.2 81.7 -6.0 9.7 74 322 A P S S- 0 0 72 0, 0.0 4,-0.0 0, 0.0 -68,-0.0 0.633 88.7-135.7 -80.8 174.8 80.8 -3.5 10.4 75 323 A P - 0 0 28 0, 0.0 3,-0.4 0, 0.0 -2,-0.0 -0.023 29.6 -97.8 -77.3-174.8 84.1 -1.5 10.6 76 324 A A S > S+ 0 0 94 1,-0.2 3,-0.6 2,-0.1 -3,-0.0 0.239 101.3 96.8 -92.5 16.1 84.9 0.9 13.4 77 325 A S T 3 S+ 0 0 66 1,-0.2 -1,-0.2 3,-0.0 3,-0.0 0.158 78.1 58.8 -89.8 22.6 83.9 3.9 11.2 78 326 A I T 3 + 0 0 74 -3,-0.4 2,-0.4 1,-0.1 -1,-0.2 -0.161 69.5 109.2-141.1 43.3 80.5 3.9 12.9 79 327 A A < + 0 0 81 -3,-0.6 -1,-0.1 1,-0.1 -3,-0.0 -0.636 35.2 108.4-121.9 76.7 81.2 4.5 16.6 80 328 A D 0 0 153 -2,-0.4 -1,-0.1 -3,-0.0 -3,-0.0 0.586 360.0 360.0-120.6 -22.3 80.0 8.0 17.5 81 329 A E 0 0 248 -3,-0.2 -2,-0.0 0, 0.0 -3,-0.0 0.480 360.0 360.0-118.2 360.0 76.9 7.3 19.6