==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 17-MAY-05 2CO9 . COMPND 2 MOLECULE: THYMUS HIGH MOBILITY GROUP BOX PROTEIN TOX; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.LI,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9258.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 62.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 17 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 45 44.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 137 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 115.4 15.2 4.6 -19.1 2 2 A S + 0 0 121 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.906 360.0 137.4-150.7 117.3 14.2 5.9 -15.7 3 3 A S - 0 0 123 -2,-0.3 2,-0.1 0, 0.0 0, 0.0 -0.940 43.4-100.8-150.8 170.3 16.4 8.0 -13.3 4 4 A G - 0 0 81 -2,-0.3 3,-0.1 1,-0.1 -2,-0.0 -0.438 19.2-176.4 -93.7 170.2 16.3 11.0 -10.9 5 5 A S + 0 0 123 -2,-0.1 -1,-0.1 2,-0.1 2,-0.0 0.587 58.6 81.8-130.5 -47.0 17.4 14.5 -11.4 6 6 A S - 0 0 80 1,-0.1 3,-0.1 2,-0.0 2,-0.1 -0.343 62.3-158.4 -67.2 146.4 16.9 16.5 -8.2 7 7 A G + 0 0 52 1,-0.1 -1,-0.1 -3,-0.1 -2,-0.1 -0.053 60.1 79.1-105.6-151.7 19.6 16.1 -5.5 8 8 A K S S- 0 0 204 1,-0.2 2,-3.0 2,-0.1 -1,-0.1 0.890 116.5 -77.7 50.6 44.1 19.7 16.6 -1.7 9 9 A K - 0 0 171 1,-0.2 -1,-0.2 -3,-0.1 -3,-0.0 -0.368 53.3-155.6 69.3 -70.2 18.0 13.2 -1.3 10 10 A K S S+ 0 0 159 -2,-3.0 2,-0.2 1,-0.0 -1,-0.2 0.415 75.6 76.1 78.2 -3.0 14.6 14.6 -2.2 11 11 A K S S- 0 0 144 -3,-0.1 3,-0.2 3,-0.0 -2,-0.1 -0.672 86.0-132.0-142.1 83.5 13.1 11.7 -0.1 12 12 A K - 0 0 185 -2,-0.2 -3,-0.0 1,-0.2 0, 0.0 -0.019 45.9 -88.3 -35.9 122.9 13.3 12.2 3.6 13 13 A K - 0 0 186 1,-0.1 -1,-0.2 0, 0.0 -4,-0.0 -0.091 58.5-175.8 -40.4 122.0 14.6 8.9 5.0 14 14 A D - 0 0 92 -3,-0.2 -1,-0.1 1,-0.0 -3,-0.0 -0.973 20.6-120.5-130.8 143.8 11.6 6.7 5.6 15 15 A P - 0 0 121 0, 0.0 2,-0.1 0, 0.0 -1,-0.0 -0.022 28.2-115.9 -69.8 178.7 11.3 3.2 7.2 16 16 A N + 0 0 121 2,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.024 66.1 78.2 -99.3-155.2 9.8 0.1 5.5 17 17 A E S S- 0 0 102 68,-0.1 2,-0.1 -2,-0.1 65,-0.1 0.583 85.4 -79.4 60.1 139.1 6.8 -2.0 6.2 18 18 A P - 0 0 39 0, 0.0 2,-0.5 0, 0.0 -2,-0.1 -0.372 41.7-137.5 -69.8 146.1 3.3 -0.9 5.2 19 19 A Q - 0 0 172 -2,-0.1 -2,-0.0 1,-0.0 59,-0.0 -0.908 26.4-102.0-110.6 132.2 1.4 1.6 7.3 20 20 A K - 0 0 132 -2,-0.5 55,-0.1 1,-0.1 -1,-0.0 -0.126 45.4-106.3 -48.6 139.4 -2.3 1.3 8.2 21 21 A P - 0 0 39 0, 0.0 -1,-0.1 0, 0.0 6,-0.1 -0.321 35.4-104.2 -69.7 151.8 -4.5 3.7 6.0 22 22 A V - 0 0 62 1,-0.1 53,-0.1 4,-0.1 52,-0.1 -0.286 41.1 -94.6 -73.4 161.4 -6.0 6.8 7.5 23 23 A S > - 0 0 86 3,-0.1 4,-2.8 1,-0.0 5,-0.2 -0.017 44.6 -90.6 -66.9 177.4 -9.7 7.0 8.5 24 24 A A H >> S+ 0 0 6 2,-0.2 4,-1.2 1,-0.2 3,-0.6 0.982 128.3 41.4 -53.8 -68.7 -12.4 8.4 6.2 25 25 A Y H 34 S+ 0 0 93 1,-0.3 4,-0.4 2,-0.2 -1,-0.2 0.811 117.0 53.1 -50.5 -31.6 -12.3 12.0 7.3 26 26 A A H >> S+ 0 0 29 1,-0.2 4,-2.0 2,-0.2 3,-1.3 0.879 97.6 62.6 -72.5 -39.3 -8.5 11.6 7.3 27 27 A L H << S+ 0 0 26 -4,-2.8 4,-0.3 -3,-0.6 -1,-0.2 0.821 106.9 46.0 -55.4 -32.0 -8.4 10.3 3.7 28 28 A F T 3X S+ 0 0 17 -4,-1.2 4,-1.4 -5,-0.2 -1,-0.3 0.609 107.2 60.1 -85.9 -13.9 -9.7 13.7 2.7 29 29 A F H <> S+ 0 0 53 -3,-1.3 4,-2.6 -4,-0.4 5,-0.3 0.898 102.4 48.5 -79.4 -43.9 -7.2 15.4 4.9 30 30 A R H < S+ 0 0 155 -4,-2.0 4,-0.4 1,-0.2 -1,-0.2 0.638 115.8 47.9 -70.9 -13.6 -4.1 14.1 3.3 31 31 A D H 4 S+ 0 0 89 -4,-0.3 4,-0.5 -5,-0.3 -1,-0.2 0.788 119.5 35.0 -94.6 -35.2 -5.7 15.1 -0.1 32 32 A T H >X S+ 0 0 12 -4,-1.4 4,-1.7 2,-0.2 3,-1.5 0.926 107.6 63.7 -84.1 -51.9 -6.7 18.6 0.9 33 33 A Q H >X S+ 0 0 63 -4,-2.6 4,-2.7 1,-0.3 3,-1.2 0.883 101.2 53.2 -37.0 -57.6 -3.8 19.6 3.2 34 34 A A H 3> S+ 0 0 57 -4,-0.4 4,-1.9 -5,-0.3 -1,-0.3 0.862 109.2 49.7 -48.7 -40.2 -1.4 19.3 0.3 35 35 A A H <> S+ 0 0 52 -3,-1.5 4,-0.8 -4,-0.5 -1,-0.3 0.779 114.9 45.4 -70.9 -27.1 -3.6 21.6 -1.6 36 36 A I H < + 0 0 79 -4,-2.5 3,-1.7 1,-0.1 -1,-0.3 -0.685 61.0 168.3-134.5 80.7 -0.1 28.7 1.2 41 41 A P T 3 S+ 0 0 90 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 0.489 74.7 73.0 -69.8 -1.9 3.4 27.6 2.5 42 42 A N T 3 S+ 0 0 161 -5,-0.1 2,-0.3 2,-0.1 -5,-0.1 0.611 78.5 92.0 -87.0 -14.2 3.1 30.4 5.0 43 43 A A S < S- 0 0 13 -3,-1.7 2,-0.1 -6,-0.2 -3,-0.1 -0.634 73.1-133.7 -84.8 138.1 0.5 28.5 7.0 44 44 A T >> - 0 0 96 -2,-0.3 4,-2.1 1,-0.1 3,-1.5 -0.459 32.6 -94.7 -87.5 161.9 1.7 26.2 9.8 45 45 A F H 3> S+ 0 0 169 1,-0.3 4,-1.8 2,-0.2 5,-0.2 0.862 128.1 55.0 -39.8 -46.5 0.5 22.6 10.5 46 46 A G H 3> S+ 0 0 44 2,-0.2 4,-2.4 1,-0.2 -1,-0.3 0.882 112.2 42.7 -57.7 -40.3 -2.1 24.1 12.9 47 47 A E H <> S+ 0 0 109 -3,-1.5 4,-1.9 2,-0.2 5,-0.2 0.982 109.1 54.0 -70.3 -59.8 -3.4 26.4 10.2 48 48 A V H X S+ 0 0 2 -4,-2.1 4,-1.4 1,-0.2 -1,-0.2 0.822 116.0 44.0 -43.7 -36.1 -3.5 23.9 7.3 49 49 A S H >X S+ 0 0 44 -4,-1.8 4,-2.4 -5,-0.4 3,-0.5 0.978 105.7 55.5 -75.0 -60.8 -5.5 21.7 9.6 50 50 A K H 3X S+ 0 0 165 -4,-2.4 4,-0.5 1,-0.3 -2,-0.2 0.742 111.4 51.3 -44.5 -24.1 -7.9 24.2 11.1 51 51 A I H 3X S+ 0 0 55 -4,-1.9 4,-1.0 2,-0.2 3,-0.4 0.905 109.0 46.1 -81.4 -46.1 -8.7 24.9 7.4 52 52 A V H XX S+ 0 0 0 -4,-1.4 4,-2.2 -3,-0.5 3,-1.5 0.942 103.8 62.0 -61.9 -49.9 -9.4 21.3 6.4 53 53 A A H 3X S+ 0 0 36 -4,-2.4 4,-1.6 1,-0.3 -1,-0.2 0.831 105.1 49.8 -45.1 -36.9 -11.6 20.5 9.4 54 54 A S H 3< S+ 0 0 91 -4,-0.5 -1,-0.3 -3,-0.4 -2,-0.2 0.795 109.4 52.3 -74.4 -29.1 -13.9 23.3 8.0 55 55 A M H X< S+ 0 0 86 -3,-1.5 3,-1.8 -4,-1.0 -2,-0.2 0.965 110.9 43.4 -70.9 -54.8 -13.9 21.7 4.6 56 56 A W H >< S+ 0 0 25 -4,-2.2 3,-2.2 1,-0.3 -2,-0.2 0.891 105.4 63.7 -58.1 -41.5 -14.8 18.2 5.6 57 57 A D T 3< S+ 0 0 133 -4,-1.6 -1,-0.3 -5,-0.4 -2,-0.2 0.623 110.3 41.9 -59.2 -10.8 -17.5 19.5 8.0 58 58 A G T < S+ 0 0 65 -3,-1.8 -1,-0.3 -4,-0.1 2,-0.3 -0.076 86.8 127.6-128.1 34.4 -19.1 20.8 4.8 59 59 A L < - 0 0 23 -3,-2.2 5,-0.1 1,-0.1 -3,-0.1 -0.669 64.1-100.2 -93.6 147.7 -18.6 17.9 2.4 60 60 A G >> - 0 0 32 -2,-0.3 4,-2.4 1,-0.1 3,-0.7 -0.262 27.8-116.9 -64.0 150.6 -21.5 16.3 0.4 61 61 A E H 3> S+ 0 0 180 1,-0.3 4,-2.3 2,-0.2 5,-0.2 0.841 119.3 51.4 -55.7 -34.8 -23.1 13.2 1.7 62 62 A E H 3> S+ 0 0 154 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.782 111.1 47.7 -73.4 -27.7 -21.9 11.4 -1.5 63 63 A Q H <> S+ 0 0 109 -3,-0.7 4,-1.2 2,-0.2 -2,-0.2 0.805 114.6 45.5 -81.9 -32.0 -18.3 12.7 -0.9 64 64 A K H X S+ 0 0 60 -4,-2.4 4,-1.3 2,-0.2 -2,-0.2 0.918 112.4 49.3 -76.7 -46.3 -18.3 11.7 2.8 65 65 A Q H X S+ 0 0 75 -4,-2.3 4,-2.3 -5,-0.2 3,-0.5 0.919 108.6 54.1 -59.1 -46.0 -19.8 8.2 2.2 66 66 A V H X S+ 0 0 47 -4,-1.2 4,-1.6 1,-0.3 -1,-0.2 0.908 105.4 53.1 -55.3 -45.3 -17.3 7.5 -0.6 67 67 A Y H X S+ 0 0 42 -4,-1.2 4,-1.0 1,-0.2 -1,-0.3 0.820 110.2 49.4 -60.7 -31.3 -14.4 8.3 1.7 68 68 A K H X S+ 0 0 118 -4,-1.3 4,-1.5 -3,-0.5 -1,-0.2 0.886 106.7 53.3 -75.3 -40.7 -15.8 5.8 4.2 69 69 A K H X S+ 0 0 126 -4,-2.3 4,-0.9 1,-0.2 -2,-0.2 0.791 107.5 53.7 -64.6 -27.8 -16.2 3.0 1.7 70 70 A K H X S+ 0 0 118 -4,-1.6 4,-2.1 -5,-0.2 -1,-0.2 0.821 102.2 58.9 -76.0 -32.5 -12.5 3.5 0.7 71 71 A T H X S+ 0 0 22 -4,-1.0 4,-3.2 2,-0.2 3,-0.5 0.977 104.8 46.4 -60.2 -59.0 -11.4 3.1 4.3 72 72 A E H X S+ 0 0 101 -4,-1.5 4,-1.3 1,-0.3 -1,-0.2 0.831 117.0 47.2 -53.3 -33.8 -12.8 -0.4 4.8 73 73 A A H X S+ 0 0 53 -4,-0.9 4,-1.4 -5,-0.2 -1,-0.3 0.792 115.2 45.7 -78.5 -29.8 -11.3 -1.3 1.5 74 74 A A H X S+ 0 0 19 -4,-2.1 4,-2.7 -3,-0.5 -2,-0.2 0.957 113.0 46.0 -77.1 -55.4 -7.9 0.3 2.4 75 75 A K H X S+ 0 0 90 -4,-3.2 4,-1.2 2,-0.2 -3,-0.2 0.901 112.5 53.9 -54.4 -44.0 -7.5 -1.1 5.9 76 76 A K H >X S+ 0 0 107 -4,-1.3 3,-1.5 -5,-0.4 4,-1.3 0.975 111.4 41.9 -55.1 -62.0 -8.5 -4.5 4.6 77 77 A E H 3X S+ 0 0 104 -4,-1.4 4,-3.2 1,-0.3 5,-0.4 0.896 105.3 66.0 -53.0 -43.9 -5.9 -4.7 1.8 78 78 A Y H 3X S+ 0 0 36 -4,-2.7 4,-1.7 1,-0.3 -1,-0.3 0.828 102.6 49.0 -48.0 -34.8 -3.3 -3.2 4.2 79 79 A L H X S+ 0 0 122 -4,-3.2 4,-1.6 1,-0.2 3,-0.8 0.892 115.5 48.9 -63.3 -40.9 -0.3 -6.7 1.7 82 82 A L H 3X S+ 0 0 28 -4,-1.7 4,-1.3 -5,-0.4 5,-0.2 0.934 99.5 63.8 -64.8 -47.6 1.4 -6.5 5.1 83 83 A A H 3< S+ 0 0 53 -4,-2.4 4,-0.4 1,-0.2 -1,-0.2 0.691 109.1 45.2 -50.7 -17.5 0.9 -10.2 5.8 84 84 A A H X> S+ 0 0 56 -3,-0.8 3,-1.1 -4,-0.5 4,-0.7 0.844 96.2 68.5 -93.9 -43.3 3.3 -10.6 2.8 85 85 A Y H >X S+ 0 0 74 -4,-1.6 4,-0.8 1,-0.3 3,-0.5 0.791 102.3 52.0 -46.7 -30.0 5.9 -8.0 3.7 86 86 A R H 3X S+ 0 0 125 -4,-1.3 4,-3.2 1,-0.2 3,-0.4 0.850 87.6 78.0 -76.6 -36.1 6.8 -10.4 6.5 87 87 A A H <4 S+ 0 0 65 -3,-1.1 -1,-0.2 -4,-0.4 -2,-0.2 0.753 102.3 42.6 -44.2 -25.8 7.1 -13.4 4.2 88 88 A S H X< S+ 0 0 89 -4,-0.7 3,-1.0 -3,-0.5 -1,-0.3 0.819 112.1 51.0 -90.7 -37.4 10.5 -11.8 3.4 89 89 A L H 3< S+ 0 0 77 -4,-0.8 -2,-0.2 -3,-0.4 -3,-0.1 0.884 102.0 60.8 -67.5 -39.5 11.5 -10.9 6.9 90 90 A V T 3< S+ 0 0 112 -4,-3.2 2,-0.6 1,-0.1 -1,-0.3 0.549 95.8 79.0 -65.4 -5.1 10.8 -14.4 8.2 91 91 A S S < S- 0 0 68 -3,-1.0 -1,-0.1 -5,-0.3 0, 0.0 -0.921 107.7 -11.8-111.5 114.9 13.5 -15.4 5.8 92 92 A K S S+ 0 0 186 -2,-0.6 -1,-0.3 1,-0.2 2,-0.3 0.926 94.6 115.1 63.1 98.6 17.1 -14.9 6.8 93 93 A S + 0 0 93 -3,-0.2 -1,-0.2 1,-0.1 -3,-0.0 -0.975 34.4 48.6-176.4 173.9 17.3 -12.7 9.9 94 94 A Y + 0 0 221 -2,-0.3 -1,-0.1 2,-0.0 0, 0.0 0.044 64.4 88.7 68.2 176.5 18.2 -12.5 13.6 95 95 A T + 0 0 133 1,-0.0 -1,-0.0 0, 0.0 0, 0.0 0.918 47.7 111.6 59.9 100.6 21.6 -13.7 15.0 96 96 A D - 0 0 116 2,-0.0 -1,-0.0 -3,-0.0 -2,-0.0 0.277 62.2-136.3-164.9 -35.1 24.1 -10.9 14.9 97 97 A S + 0 0 118 1,-0.1 5,-0.1 2,-0.0 -3,-0.0 0.903 50.3 118.6 61.7 102.8 24.9 -9.8 18.5 98 98 A G S > S- 0 0 32 3,-0.4 3,-1.0 0, 0.0 -1,-0.1 -0.794 77.7 -43.8-162.6-154.9 25.1 -6.0 18.7 99 99 A P T 3 S+ 0 0 141 0, 0.0 3,-0.2 0, 0.0 -2,-0.0 0.550 108.8 89.4 -69.7 -6.8 23.6 -2.9 20.3 100 100 A S T 3 S- 0 0 106 1,-0.3 2,-0.3 0, 0.0 0, 0.0 0.897 108.4 -19.6 -57.4 -42.6 20.1 -4.3 19.6 101 101 A S < 0 0 110 -3,-1.0 -3,-0.4 0, 0.0 -1,-0.3 -0.920 360.0 360.0-168.6 140.8 20.2 -6.1 23.0 102 102 A G 0 0 128 -2,-0.3 0, 0.0 -3,-0.2 0, 0.0 -0.365 360.0 360.0 125.7 360.0 22.7 -7.1 25.6