==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 17-MAY-05 2COE . COMPND 2 MOLECULE: DEOXYNUCLEOTIDYLTRANSFERASE, TERMINAL VARIANT; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 120 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8197.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 58.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 13 10.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 11.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 22.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 131 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 141.1 -41.3 17.6 -26.9 2 2 A S + 0 0 115 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.943 360.0 168.1-174.4 156.6 -37.9 18.4 -25.3 3 3 A S + 0 0 134 -2,-0.3 2,-0.3 0, 0.0 0, 0.0 -0.969 9.6 136.5-169.9 162.9 -35.9 21.1 -23.7 4 4 A G - 0 0 68 -2,-0.3 -2,-0.0 2,-0.0 0, 0.0 -0.945 24.4-163.9 167.8 177.0 -32.7 21.8 -21.7 5 5 A S - 0 0 122 -2,-0.3 -1,-0.0 2,-0.0 0, 0.0 0.348 23.1-177.8-148.2 -59.0 -29.7 24.0 -21.3 6 6 A S - 0 0 126 1,-0.0 2,-0.3 2,-0.0 -2,-0.0 0.251 15.3-134.2 63.4 164.1 -27.0 22.4 -19.1 7 7 A G - 0 0 63 2,-0.0 2,-0.3 0, 0.0 -1,-0.0 -0.951 11.2-153.9-149.2 165.7 -23.8 24.1 -18.2 8 8 A T + 0 0 153 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.804 15.5 159.3-135.5 175.9 -20.0 23.6 -18.0 9 9 A G - 0 0 74 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.802 10.1-173.6 168.3 151.0 -17.0 24.8 -16.1 10 10 A A + 0 0 75 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.950 8.8 164.1-161.7 140.3 -13.5 23.9 -15.0 11 11 A L + 0 0 164 -2,-0.3 2,-0.3 4,-0.1 -2,-0.0 -0.844 22.3 116.5-163.6 121.7 -10.8 25.5 -12.8 12 12 A M S S- 0 0 142 -2,-0.3 2,-2.3 0, 0.0 3,-0.3 -0.972 72.2 -65.8-173.5 170.3 -7.6 24.0 -11.4 13 13 A A S S- 0 0 96 -2,-0.3 -2,-0.0 1,-0.3 0, 0.0 -0.493 103.8 -55.9 -72.0 81.1 -3.9 24.1 -11.3 14 14 A S S S+ 0 0 122 -2,-2.3 -1,-0.3 1,-0.1 4,-0.0 0.939 117.3 100.9 42.4 75.1 -3.4 23.0 -14.9 15 15 A S + 0 0 41 -3,-0.3 -2,-0.2 2,-0.0 -4,-0.1 -0.154 28.0 158.4 175.6 75.8 -5.4 19.8 -14.6 16 16 A P S S- 0 0 83 0, 0.0 -5,-0.1 0, 0.0 -3,-0.0 0.845 91.2 -29.0 -75.0 -36.2 -9.0 19.8 -15.9 17 17 A Q S S+ 0 0 175 1,-0.0 2,-0.4 2,-0.0 -2,-0.0 -0.049 98.9 119.5-179.5 58.5 -9.0 16.0 -16.3 18 18 A D - 0 0 105 -4,-0.0 4,-0.0 3,-0.0 -1,-0.0 -0.828 58.6-131.8-137.4 95.2 -5.6 14.5 -17.0 19 19 A I - 0 0 57 -2,-0.4 31,-0.1 1,-0.1 32,-0.1 -0.213 16.7-133.8 -47.5 121.9 -4.4 12.1 -14.4 20 20 A K S S+ 0 0 141 29,-0.5 2,-0.5 1,-0.2 30,-0.1 0.923 94.6 31.7 -43.2 -58.9 -0.8 13.1 -13.6 21 21 A F > - 0 0 54 28,-0.7 3,-0.6 3,-0.1 -1,-0.2 -0.919 63.0-166.5-109.8 125.6 0.4 9.6 -13.9 22 22 A Q T 3 S+ 0 0 130 -2,-0.5 -1,-0.1 1,-0.2 3,-0.1 -0.072 92.0 41.5 -96.9 31.5 -1.3 7.2 -16.4 23 23 A D T 3 S+ 0 0 136 38,-0.0 -1,-0.2 0, 0.0 27,-0.0 -0.009 86.5 92.3-167.1 39.1 0.4 4.2 -14.7 24 24 A L < + 0 0 19 -3,-0.6 27,-1.0 2,-0.1 2,-0.6 -0.418 47.0 171.4-137.9 58.0 0.2 4.8 -11.0 25 25 A V E -a 51 0A 6 34,-0.5 37,-2.3 25,-0.1 36,-1.3 -0.619 13.6-165.5 -75.2 115.9 -2.9 3.1 -9.9 26 26 A V E -ab 52 62A 0 25,-0.8 27,-1.3 -2,-0.6 2,-0.6 -0.914 5.3-166.7-108.4 127.0 -3.0 3.1 -6.1 27 27 A F E - b 0 63A 11 35,-3.3 37,-3.3 -2,-0.5 2,-0.3 -0.941 8.5-152.3-118.0 111.2 -5.4 0.9 -4.3 28 28 A I E - b 0 64A 0 -2,-0.6 2,-0.6 25,-0.4 37,-0.2 -0.610 13.1-135.3 -82.1 138.5 -6.0 1.5 -0.6 29 29 A L E - b 0 65A 6 35,-1.9 37,-0.5 -2,-0.3 5,-0.1 -0.848 6.1-157.1 -98.5 124.2 -7.0 -1.4 1.6 30 30 A E > + 0 0 86 -2,-0.6 4,-1.6 3,-0.1 -1,-0.2 0.939 66.4 101.5 -61.8 -49.7 -9.8 -0.8 4.0 31 31 A K T 4 S+ 0 0 101 1,-0.2 35,-0.4 2,-0.2 37,-0.3 -0.081 94.0 14.6 -39.7 125.5 -8.7 -3.7 6.3 32 32 A K T 4 S+ 0 0 110 1,-0.1 34,-0.2 35,-0.1 -1,-0.2 0.968 134.2 44.0 67.0 55.2 -6.9 -2.1 9.2 33 33 A M T 4 S- 0 0 38 -3,-0.1 2,-0.3 32,-0.1 4,-0.2 -0.169 89.3-133.5-179.7 -72.7 -8.1 1.4 8.5 34 34 A G X - 0 0 18 -4,-1.6 4,-0.5 1,-0.1 5,-0.0 -0.804 33.5 -70.6 126.5-167.8 -11.8 1.9 7.6 35 35 A T H >>S+ 0 0 90 -2,-0.3 4,-4.7 3,-0.2 5,-0.6 0.907 118.9 57.7 -90.3 -55.0 -13.8 3.7 5.0 36 36 A T H >5S+ 0 0 114 2,-0.2 4,-4.0 1,-0.2 -2,-0.1 0.913 119.1 30.6 -38.7 -70.2 -13.3 7.3 6.1 37 37 A R H >>S+ 0 0 145 2,-0.2 4,-2.7 -4,-0.2 5,-0.7 0.969 119.8 53.8 -55.5 -60.3 -9.6 7.2 5.8 38 38 A R H X5S+ 0 0 40 -4,-0.5 4,-2.2 1,-0.3 -2,-0.2 0.891 118.8 35.8 -39.7 -55.6 -9.5 4.7 3.0 39 39 A A H X5S+ 0 0 35 -4,-4.7 4,-2.4 2,-0.2 -1,-0.3 0.906 120.6 51.0 -66.9 -43.2 -11.8 6.9 1.0 40 40 A L H >XX>S+ 0 0 0 -4,-3.3 5,-1.7 -5,-0.2 3,-1.2 0.945 109.5 52.2 -57.9 -51.6 -4.2 10.9 -3.5 46 46 A R H ><5S+ 0 0 95 -4,-1.7 3,-2.0 1,-0.3 -1,-0.2 0.911 102.7 58.6 -50.4 -49.0 -6.5 11.5 -6.4 47 47 A R H 3<5S+ 0 0 204 -4,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.817 101.8 55.9 -50.7 -33.4 -6.4 15.2 -5.7 48 48 A K H <<5S- 0 0 93 -3,-1.2 -1,-0.3 -4,-1.1 -2,-0.2 0.768 131.3 -98.6 -70.4 -26.4 -2.7 15.0 -6.2 49 49 A G T <<5S+ 0 0 11 -3,-2.0 -28,-0.7 -4,-0.9 -29,-0.5 0.291 77.9 140.8 122.9 -3.1 -3.4 13.5 -9.6 50 50 A F < - 0 0 4 -5,-1.7 2,-1.0 -30,-0.1 -1,-0.3 -0.255 57.6-119.7 -68.0 157.3 -3.0 9.8 -8.7 51 51 A R E +a 25 0A 67 -27,-1.0 -25,-0.8 -30,-0.1 2,-0.1 -0.701 40.7 178.6-102.0 79.8 -5.3 7.2 -10.2 52 52 A V E -a 26 0A 8 -2,-1.0 2,-0.4 -10,-0.2 -25,-0.2 -0.472 12.4-152.2 -80.5 152.9 -6.9 5.7 -7.1 53 53 A E - 0 0 60 -27,-1.3 -25,-0.4 -2,-0.1 4,-0.1 -0.987 18.2-152.7-130.9 138.9 -9.5 3.0 -7.3 54 54 A N S S+ 0 0 94 -2,-0.4 2,-0.3 -27,-0.1 -1,-0.1 0.824 89.8 37.3 -74.8 -33.2 -12.4 2.1 -5.0 55 55 A E S S- 0 0 139 1,-0.0 -1,-0.1 -28,-0.0 -27,-0.0 -0.905 96.0 -99.5-122.0 149.7 -12.2 -1.5 -6.2 56 56 A L + 0 0 14 -2,-0.3 2,-0.3 2,-0.1 -2,-0.1 -0.299 49.6 165.0 -64.0 148.5 -9.3 -3.7 -7.1 57 57 A S > - 0 0 31 25,-0.1 3,-1.4 -4,-0.1 27,-0.1 -0.950 55.0 -97.3-156.8 171.1 -8.6 -4.1 -10.8 58 58 A D T 3 S+ 0 0 101 -2,-0.3 27,-0.3 1,-0.3 28,-0.3 0.621 121.6 64.1 -69.5 -12.4 -5.9 -5.3 -13.2 59 59 A S T 3 S+ 0 0 58 25,-0.1 -34,-0.5 26,-0.1 2,-0.4 0.668 74.5 110.2 -83.0 -19.4 -5.0 -1.6 -13.4 60 60 A V < + 0 0 1 -3,-1.4 26,-0.2 1,-0.2 -34,-0.1 -0.440 33.1 162.8 -61.7 114.6 -4.0 -1.7 -9.8 61 61 A T + 0 0 45 -36,-1.3 28,-3.1 -2,-0.4 2,-0.4 0.575 67.0 36.5-107.7 -18.6 -0.2 -1.3 -9.9 62 62 A H E -bc 26 89A 19 -37,-2.3 -35,-3.3 26,-0.3 2,-0.5 -0.983 65.8-162.2-141.2 125.8 0.2 -0.3 -6.2 63 63 A I E -bc 27 90A 0 26,-4.7 28,-2.0 -2,-0.4 2,-0.3 -0.940 10.6-153.6-112.0 122.1 -1.8 -1.5 -3.3 64 64 A V E +bc 28 91A 0 -37,-3.3 -35,-1.9 -2,-0.5 2,-0.3 -0.724 16.9 173.0 -95.1 143.3 -1.8 0.5 -0.1 65 65 A A E -bc 29 92A 0 26,-1.4 28,-0.7 -2,-0.3 2,-0.4 -0.919 21.4-144.1-153.9 122.5 -2.4 -1.1 3.3 66 66 A E S S- 0 0 50 -37,-0.5 2,-3.0 -35,-0.4 3,-0.1 -0.744 82.8 -15.6 -91.0 132.2 -2.0 0.4 6.8 67 67 A N S S+ 0 0 116 -2,-0.4 -1,-0.1 1,-0.2 -35,-0.1 -0.314 108.0 113.1 75.2 -57.6 -0.7 -1.8 9.5 68 68 A N - 0 0 7 -2,-3.0 2,-0.2 -37,-0.3 -1,-0.2 -0.065 67.0-128.0 -44.7 144.6 -1.4 -4.8 7.4 69 69 A S > - 0 0 63 -3,-0.1 4,-2.7 1,-0.1 5,-0.4 -0.635 24.8-101.6 -99.3 158.3 1.8 -6.6 6.3 70 70 A G H > S+ 0 0 0 1,-0.3 4,-2.3 -2,-0.2 45,-0.1 0.790 126.4 53.0 -44.9 -32.2 2.9 -7.5 2.8 71 71 A S H > S+ 0 0 62 2,-0.2 4,-3.6 3,-0.2 5,-0.3 0.954 106.7 48.4 -69.7 -52.6 1.7 -11.0 3.8 72 72 A D H > S+ 0 0 76 1,-0.2 4,-1.7 2,-0.2 -2,-0.2 0.923 116.7 43.9 -52.7 -49.1 -1.7 -10.0 5.0 73 73 A V H X S+ 0 0 0 -4,-2.7 4,-2.9 2,-0.2 -1,-0.2 0.906 114.4 51.4 -62.7 -43.2 -2.1 -8.0 1.8 74 74 A L H X S+ 0 0 36 -4,-2.3 4,-2.3 -5,-0.4 5,-0.4 0.982 107.7 49.4 -56.7 -63.3 -0.7 -10.9 -0.2 75 75 A E H X S+ 0 0 152 -4,-3.6 4,-1.2 1,-0.3 -1,-0.2 0.831 114.5 48.1 -44.7 -37.9 -3.0 -13.5 1.3 76 76 A W H X S+ 0 0 30 -4,-1.7 4,-2.2 -5,-0.3 -1,-0.3 0.904 105.2 58.5 -70.4 -42.9 -5.8 -11.1 0.4 77 77 A L H < S+ 0 0 16 -4,-2.9 3,-0.4 1,-0.3 -2,-0.2 0.930 110.2 42.2 -50.4 -52.3 -4.4 -10.7 -3.1 78 78 A Q H < S+ 0 0 171 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.2 0.793 109.9 59.5 -65.5 -29.0 -4.7 -14.4 -3.7 79 79 A A H < S+ 0 0 73 -4,-1.2 -1,-0.2 -5,-0.4 -2,-0.2 0.827 89.9 93.5 -67.9 -32.6 -8.1 -14.2 -1.9 80 80 A Q < - 0 0 54 -4,-2.2 -3,-0.0 -3,-0.4 0, 0.0 -0.066 67.0-150.7 -56.8 162.4 -9.2 -11.8 -4.6 81 81 A K + 0 0 194 2,-0.1 2,-0.2 0, 0.0 -1,-0.1 0.458 64.3 105.9-113.1 -10.1 -11.0 -13.0 -7.7 82 82 A V - 0 0 54 -5,-0.1 2,-0.5 1,-0.1 -25,-0.1 -0.496 69.0-130.1 -74.4 140.9 -9.8 -10.2 -9.9 83 83 A Q - 0 0 167 -2,-0.2 2,-0.4 2,-0.0 -25,-0.1 -0.824 20.6-163.0 -97.3 127.6 -7.1 -11.2 -12.4 84 84 A V - 0 0 44 -2,-0.5 3,-0.2 1,-0.1 -26,-0.1 -0.906 18.6-151.3-112.4 137.7 -4.0 -9.0 -12.6 85 85 A S S S+ 0 0 115 -2,-0.4 2,-0.3 -27,-0.3 -1,-0.1 0.796 93.2 19.0 -73.2 -30.0 -1.6 -9.1 -15.5 86 86 A S S S- 0 0 93 -28,-0.3 -1,-0.3 -26,-0.2 -3,-0.0 -0.907 94.9-106.4-147.3 113.9 1.2 -8.0 -13.2 87 87 A Q - 0 0 130 -2,-0.3 -29,-0.0 -3,-0.2 2,-0.0 -0.036 43.1-120.9 -38.2 130.5 1.1 -8.4 -9.4 88 88 A P - 0 0 3 0, 0.0 2,-0.3 0, 0.0 -26,-0.3 -0.258 28.3 -95.0 -75.0 165.3 0.7 -4.9 -7.9 89 89 A E E -c 62 0A 67 -28,-3.1 -26,-4.7 -2,-0.0 2,-0.6 -0.636 30.5-145.7 -84.7 138.4 3.1 -3.3 -5.5 90 90 A L E +c 63 0A 9 -2,-0.3 24,-1.9 -28,-0.2 25,-0.4 -0.922 31.6 155.4-109.1 114.3 2.5 -3.7 -1.8 91 91 A L E -cD 64 113A 0 -28,-2.0 -26,-1.4 -2,-0.6 22,-0.3 -0.950 42.3-103.3-136.6 155.3 3.5 -0.8 0.4 92 92 A D E >> -c 65 0A 50 20,-3.4 3,-3.9 -2,-0.3 4,-0.7 -0.384 40.5-103.3 -75.6 155.5 2.4 0.7 3.7 93 93 A V H 3> S+ 0 0 10 -28,-0.7 4,-4.6 1,-0.3 5,-0.4 0.808 117.1 80.5 -46.3 -32.3 0.2 3.7 3.9 94 94 A S H 3> S+ 0 0 44 1,-0.3 4,-1.3 2,-0.2 -1,-0.3 0.775 94.0 48.3 -46.2 -28.6 3.4 5.5 4.8 95 95 A W H <> S+ 0 0 0 -3,-3.9 4,-4.7 17,-0.3 5,-0.3 0.948 113.7 42.6 -77.2 -53.8 3.9 5.4 1.0 96 96 A L H X S+ 0 0 0 -4,-0.7 4,-1.5 1,-0.2 -2,-0.2 0.898 113.2 54.7 -58.3 -42.5 0.5 6.7 0.1 97 97 A I H X S+ 0 0 87 -4,-4.6 4,-1.9 2,-0.2 -1,-0.2 0.904 117.7 35.9 -57.5 -43.7 0.8 9.2 2.9 98 98 A E H X>S+ 0 0 94 -4,-1.3 4,-3.5 -5,-0.4 5,-0.5 0.948 107.1 63.4 -74.4 -52.5 4.0 10.4 1.4 99 99 A C H <>S+ 0 0 0 -4,-4.7 5,-0.6 1,-0.2 4,-0.4 0.791 110.0 47.0 -41.6 -30.4 3.0 10.0 -2.3 100 100 A I H ><5S+ 0 0 18 -4,-1.5 3,-1.6 -5,-0.3 -2,-0.2 0.983 113.2 41.3 -75.8 -66.4 0.5 12.6 -1.2 101 101 A G H 3<5S+ 0 0 72 -4,-1.9 -2,-0.2 1,-0.3 -1,-0.2 0.677 123.1 45.3 -55.4 -17.2 2.7 15.1 0.6 102 102 A A T 3<5S- 0 0 49 -4,-3.5 -1,-0.3 2,-0.2 -2,-0.2 0.591 96.6-146.0 -99.7 -17.4 5.1 14.4 -2.3 103 103 A G T <