==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER OXIDOREDUCTASE 18-MAY-05 2COM . COMPND 2 MOLECULE: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR N.TOCHIO,T.UMEHARA,S.KOSHIBA,M.INOUE,A.TANAKA,T.KIGAWA, . 124 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9308.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 50.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 45 36.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 2 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 121 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-150.9 -23.4 9.4 -8.6 2 2 A S + 0 0 142 1,-0.0 2,-0.3 2,-0.0 0, 0.0 -0.452 360.0 177.8 -63.7 113.6 -21.0 10.9 -11.1 3 3 A S + 0 0 120 -2,-0.5 2,-0.3 2,-0.0 -1,-0.0 -0.826 22.4 89.4-118.9 157.9 -22.8 11.3 -14.3 4 4 A G S S- 0 0 77 -2,-0.3 2,-0.4 0, 0.0 -2,-0.0 -0.920 72.5 -46.9 162.7-133.9 -21.9 12.7 -17.7 5 5 A S + 0 0 120 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.969 46.8 148.4-144.4 124.9 -20.3 11.4 -20.9 6 6 A S - 0 0 124 -2,-0.4 2,-0.3 1,-0.2 -1,-0.1 0.675 38.7-150.4-120.0 -43.9 -17.2 9.2 -21.4 7 7 A G - 0 0 74 1,-0.1 2,-0.3 0, 0.0 -1,-0.2 -0.739 38.7 -52.0 106.0-154.8 -17.9 7.1 -24.5 8 8 A E S S+ 0 0 199 -2,-0.3 -1,-0.1 2,-0.0 0, 0.0 -0.647 89.8 103.2-128.5 75.3 -16.7 3.7 -25.5 9 9 A E - 0 0 163 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.986 60.6-118.3-155.8 143.4 -12.9 3.5 -25.1 10 10 A P - 0 0 119 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 0.024 27.0-132.3 -69.7-177.7 -10.4 2.1 -22.6 11 11 A S - 0 0 64 1,-0.2 5,-0.0 2,-0.1 0, 0.0 -0.977 6.5-126.7-141.2 153.1 -7.8 4.1 -20.5 12 12 A G S > S- 0 0 45 -2,-0.3 4,-0.6 3,-0.1 -1,-0.2 0.677 79.4 -30.8 -67.4-126.9 -4.1 3.9 -19.7 13 13 A V H >> S+ 0 0 42 1,-0.2 3,-1.9 2,-0.2 4,-0.6 0.924 135.7 62.7 -61.4 -46.2 -2.9 4.0 -16.2 14 14 A E H >> S+ 0 0 121 1,-0.3 3,-2.6 2,-0.2 4,-1.4 0.898 92.3 65.0 -45.3 -49.4 -5.8 6.1 -15.0 15 15 A G H 3> S+ 0 0 18 1,-0.3 4,-1.5 2,-0.2 -1,-0.3 0.832 88.8 68.6 -44.1 -38.3 -8.2 3.4 -16.0 16 16 A A H << S+ 0 0 0 -3,-1.9 4,-0.4 -4,-0.6 -1,-0.3 0.853 103.5 43.8 -51.2 -37.6 -6.6 1.3 -13.2 17 17 A A H X< S+ 0 0 1 -3,-2.6 3,-2.1 -4,-0.6 5,-0.3 0.900 101.3 68.3 -75.4 -43.0 -8.1 3.6 -10.7 18 18 A F H 3< S+ 0 0 185 -4,-1.4 -2,-0.2 1,-0.3 4,-0.2 0.911 92.9 57.9 -40.1 -61.0 -11.5 3.8 -12.4 19 19 A Q T 3< S+ 0 0 105 -4,-1.5 2,-0.5 2,-0.1 -1,-0.3 0.803 103.7 66.3 -41.7 -33.9 -12.3 0.2 -11.6 20 20 A S S < S- 0 0 25 -3,-2.1 2,-2.4 -4,-0.4 -1,-0.0 -0.820 93.3-124.1 -97.9 127.9 -11.8 1.3 -7.9 21 21 A R S S+ 0 0 241 -2,-0.5 -3,-0.1 2,-0.0 -2,-0.1 -0.428 76.4 95.8 -69.4 78.2 -14.2 3.7 -6.4 22 22 A L S S- 0 0 27 -2,-2.4 2,-0.3 -5,-0.3 -2,-0.1 -0.977 81.4 -89.4-164.9 152.4 -11.6 6.3 -5.4 23 23 A P - 0 0 38 0, 0.0 5,-0.0 0, 0.0 -2,-0.0 -0.501 23.0-160.1 -69.8 125.4 -10.0 9.5 -6.7 24 24 A H S S+ 0 0 95 -2,-0.3 30,-0.1 1,-0.2 3,-0.1 0.395 92.5 52.0 -85.1 3.0 -6.9 8.9 -8.8 25 25 A D S S+ 0 0 116 1,-0.1 2,-0.2 2,-0.0 -1,-0.2 0.698 116.7 26.0-106.9 -31.0 -5.8 12.5 -8.1 26 26 A R S S- 0 0 156 24,-0.1 2,-0.2 21,-0.0 -1,-0.1 -0.707 82.7-100.6-126.1 177.7 -6.0 12.5 -4.3 27 27 A M - 0 0 19 -2,-0.2 2,-0.2 -3,-0.1 -3,-0.1 -0.610 29.4-133.3 -99.8 161.4 -5.8 10.0 -1.4 28 28 A T > - 0 0 35 -2,-0.2 4,-3.3 1,-0.0 5,-0.3 -0.583 35.6 -91.0-108.3 172.4 -8.7 8.4 0.6 29 29 A S H > S+ 0 0 97 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.873 128.3 45.6 -48.0 -42.3 -9.3 7.9 4.3 30 30 A Q H >> S+ 0 0 111 2,-0.2 4,-3.1 1,-0.2 3,-0.5 0.989 112.9 45.9 -66.2 -62.2 -7.7 4.5 4.0 31 31 A E H 3> S+ 0 0 2 1,-0.3 4,-3.1 2,-0.2 8,-0.2 0.872 113.2 53.0 -48.8 -41.5 -4.6 5.5 1.9 32 32 A A H 3< S+ 0 0 25 -4,-3.3 -1,-0.3 2,-0.2 7,-0.2 0.893 112.1 44.2 -62.6 -41.1 -4.2 8.5 4.3 33 33 A A H << S+ 0 0 80 -4,-1.7 -2,-0.2 -3,-0.5 -1,-0.2 0.914 117.1 44.6 -70.2 -44.5 -4.2 6.2 7.3 34 34 A C H < S+ 0 0 69 -4,-3.1 -2,-0.2 1,-0.3 -3,-0.2 0.915 124.9 33.8 -66.2 -44.4 -1.9 3.6 5.7 35 35 A F X + 0 0 7 -4,-3.1 4,-1.9 -5,-0.3 -1,-0.3 -0.788 65.2 162.0-117.8 87.7 0.5 6.3 4.4 36 36 A P H > S+ 0 0 70 0, 0.0 4,-2.3 0, 0.0 -1,-0.2 0.903 77.3 53.5 -69.8 -43.4 0.6 9.2 6.9 37 37 A D H 4 S+ 0 0 115 2,-0.2 9,-0.1 1,-0.2 -2,-0.1 0.886 110.1 49.2 -59.7 -40.5 3.8 10.6 5.5 38 38 A I H >4 S+ 0 0 12 1,-0.2 3,-1.6 2,-0.2 8,-0.2 0.969 113.5 43.2 -63.9 -55.5 2.4 10.7 2.0 39 39 A I H 3< S+ 0 0 69 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.825 117.0 49.6 -60.2 -31.9 -0.9 12.4 3.0 40 40 A S T 3< S+ 0 0 107 -4,-2.3 -1,-0.3 -5,-0.2 -2,-0.2 -0.119 103.6 85.7 -99.1 35.5 1.1 14.8 5.2 41 41 A G S < S- 0 0 25 -3,-1.6 -3,-0.1 1,-0.1 2,-0.1 -0.662 87.5 -64.8-126.0-177.8 3.6 15.6 2.4 42 42 A P > - 0 0 69 0, 0.0 4,-2.0 0, 0.0 3,-0.5 -0.372 52.3-104.6 -69.8 146.1 4.1 17.9 -0.6 43 43 A Q H > S+ 0 0 133 1,-0.3 4,-2.2 2,-0.2 5,-0.2 0.800 123.6 57.7 -37.3 -36.2 1.8 17.7 -3.6 44 44 A Q H > S+ 0 0 96 2,-0.2 4,-2.9 1,-0.2 -1,-0.3 0.981 104.8 45.8 -61.6 -59.9 4.7 15.9 -5.2 45 45 A T H > S+ 0 0 49 -3,-0.5 4,-1.8 1,-0.2 5,-0.2 0.899 112.4 53.1 -50.3 -46.1 5.1 13.1 -2.7 46 46 A Q H X S+ 0 0 55 -4,-2.0 4,-2.6 1,-0.2 -1,-0.2 0.930 111.3 45.0 -56.5 -48.9 1.4 12.6 -2.7 47 47 A K H X S+ 0 0 103 -4,-2.2 4,-1.3 -5,-0.3 5,-0.2 0.910 106.6 60.1 -62.4 -43.7 1.3 12.2 -6.5 48 48 A V H X S+ 0 0 8 -4,-2.9 4,-1.5 1,-0.2 -1,-0.2 0.888 112.6 38.7 -51.5 -43.2 4.4 10.0 -6.5 49 49 A F H X S+ 0 0 0 -4,-1.8 4,-2.0 2,-0.2 5,-0.2 0.913 110.7 57.1 -74.9 -45.0 2.5 7.5 -4.3 50 50 A L H X S+ 0 0 6 -4,-2.6 4,-0.8 1,-0.2 -1,-0.2 0.663 112.2 46.2 -60.6 -14.5 -0.8 7.9 -6.2 51 51 A F H X S+ 0 0 43 -4,-1.3 4,-2.4 -5,-0.2 -1,-0.2 0.804 105.2 56.5 -95.7 -37.9 1.1 6.9 -9.3 52 52 A I H X S+ 0 0 0 -4,-1.5 4,-1.8 -5,-0.2 -2,-0.2 0.872 110.8 46.2 -61.9 -38.2 2.9 3.9 -7.8 53 53 A R H X S+ 0 0 2 -4,-2.0 4,-1.9 2,-0.2 5,-0.2 0.980 112.6 46.6 -68.6 -59.0 -0.4 2.3 -6.9 54 54 A N H X S+ 0 0 9 -4,-0.8 4,-1.7 1,-0.2 3,-0.2 0.908 114.2 49.6 -49.7 -48.0 -2.2 2.9 -10.1 55 55 A R H X S+ 0 0 69 -4,-2.4 4,-1.9 1,-0.2 5,-0.3 0.916 105.7 56.5 -58.8 -45.6 0.7 1.7 -12.1 56 56 A T H X S+ 0 0 0 -4,-1.8 4,-1.5 1,-0.2 -1,-0.2 0.876 107.2 49.5 -54.4 -40.2 1.0 -1.5 -9.9 57 57 A L H X S+ 0 0 6 -4,-1.9 4,-3.0 -3,-0.2 -1,-0.2 0.858 105.3 59.0 -68.2 -35.8 -2.6 -2.3 -10.8 58 58 A Q H X S+ 0 0 57 -4,-1.7 4,-1.4 2,-0.2 -2,-0.2 0.969 107.8 42.8 -57.1 -58.4 -1.9 -1.8 -14.5 59 59 A L H X S+ 0 0 20 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.853 116.2 50.9 -57.5 -35.9 0.8 -4.4 -14.7 60 60 A W H < S+ 0 0 11 -4,-1.5 -1,-0.2 -5,-0.3 -2,-0.2 0.891 108.2 50.3 -69.5 -40.8 -1.4 -6.7 -12.6 61 61 A L H < S+ 0 0 96 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.716 114.4 46.7 -69.9 -20.6 -4.4 -6.2 -14.8 62 62 A D H < S+ 0 0 141 -4,-1.4 -2,-0.2 -5,-0.2 -1,-0.2 0.821 130.6 19.4 -88.7 -36.5 -2.2 -7.1 -17.8 63 63 A N S >< S+ 0 0 70 -4,-2.2 3,-1.6 -5,-0.2 -2,-0.2 -0.335 73.2 142.2-130.6 51.0 -0.6 -10.2 -16.3 64 64 A P T 3 + 0 0 47 0, 0.0 40,-0.2 0, 0.0 -3,-0.1 0.496 58.8 83.5 -69.8 -2.4 -3.0 -11.1 -13.4 65 65 A K T 3 S+ 0 0 159 -3,-0.1 2,-0.3 2,-0.1 -5,-0.1 0.680 95.5 42.5 -74.5 -17.9 -2.3 -14.7 -14.3 66 66 A I S < S- 0 0 72 -3,-1.6 36,-0.2 -6,-0.2 2,-0.2 -0.921 98.0 -92.5-129.6 155.2 0.9 -14.6 -12.2 67 67 A Q - 0 0 90 -2,-0.3 2,-1.0 38,-0.1 -2,-0.1 -0.436 36.1-130.6 -67.2 133.2 1.7 -13.1 -8.8 68 68 A L - 0 0 16 -2,-0.2 -1,-0.1 -4,-0.1 -8,-0.1 -0.741 25.5-154.2 -90.0 99.1 3.1 -9.6 -9.0 69 69 A T > - 0 0 61 -2,-1.0 4,-1.9 1,-0.1 5,-0.2 -0.226 23.4-116.2 -68.2 160.5 6.3 -9.5 -6.9 70 70 A F H > S+ 0 0 40 2,-0.2 4,-2.0 1,-0.2 5,-0.1 0.905 113.7 52.8 -64.1 -42.8 7.6 -6.3 -5.3 71 71 A E H > S+ 0 0 116 2,-0.2 4,-2.9 1,-0.2 3,-0.4 0.974 107.7 49.2 -57.0 -59.9 10.8 -6.4 -7.3 72 72 A A H > S+ 0 0 34 1,-0.3 4,-2.9 2,-0.2 5,-0.4 0.926 110.3 50.9 -45.0 -57.6 9.0 -6.7 -10.7 73 73 A T H X S+ 0 0 0 -4,-1.9 4,-1.8 1,-0.2 -1,-0.3 0.879 113.1 47.5 -49.7 -42.5 6.6 -3.8 -9.9 74 74 A L H < S+ 0 0 29 -4,-2.0 -2,-0.2 -3,-0.4 -1,-0.2 0.971 111.3 48.2 -64.7 -55.9 9.7 -1.7 -9.0 75 75 A Q H < S+ 0 0 159 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.929 115.5 44.8 -50.1 -52.7 11.7 -2.5 -12.0 76 76 A Q H < S+ 0 0 89 -4,-2.9 -1,-0.2 -5,-0.2 -2,-0.2 0.853 100.5 90.0 -61.5 -35.4 8.8 -1.8 -14.3 77 77 A L S < S- 0 0 6 -4,-1.8 2,-0.5 -5,-0.4 -25,-0.0 -0.152 74.3-135.2 -60.1 157.8 8.0 1.3 -12.3 78 78 A E > - 0 0 108 1,-0.0 3,-1.1 4,-0.0 -1,-0.1 -0.972 36.1 -80.0-124.1 121.5 9.7 4.6 -13.4 79 79 A A T 3 S+ 0 0 51 -2,-0.5 -1,-0.0 1,-0.4 0, 0.0 0.085 108.1 43.0 -47.4 165.1 11.3 7.0 -10.9 80 80 A P T 3> S+ 0 0 67 0, 0.0 4,-1.3 0, 0.0 -1,-0.4 -0.988 126.2 51.8 -69.7 -4.4 11.0 9.0 -9.0 81 81 A Y T X4 S+ 0 0 50 -3,-1.1 3,-0.7 1,-0.2 -2,-0.3 0.956 118.9 35.4 -49.5 -61.7 8.2 6.6 -8.2 82 82 A N T 34 S+ 0 0 49 1,-0.2 -1,-0.2 -8,-0.1 6,-0.1 0.800 101.5 81.9 -64.2 -29.0 10.5 3.6 -8.1 83 83 A S T 34 S+ 0 0 72 1,-0.2 2,-1.3 2,-0.1 -1,-0.2 0.896 87.2 56.3 -41.1 -54.0 13.2 5.8 -6.6 84 84 A D XX + 0 0 76 -4,-1.3 4,-1.6 -3,-0.7 3,-0.8 -0.671 66.5 176.9 -86.8 89.8 11.6 5.4 -3.2 85 85 A T H 3> S+ 0 0 74 -2,-1.3 4,-2.2 1,-0.2 5,-0.3 0.912 76.5 65.1 -58.1 -45.0 11.6 1.6 -2.7 86 86 A V H 3> S+ 0 0 76 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.848 105.1 46.4 -46.4 -38.9 10.2 1.9 0.8 87 87 A L H <> S+ 0 0 7 -3,-0.8 4,-3.0 2,-0.2 5,-0.3 0.938 108.0 53.3 -71.0 -48.8 7.0 3.3 -0.8 88 88 A V H X S+ 0 0 0 -4,-1.6 4,-1.8 -7,-0.3 -2,-0.2 0.787 111.3 49.5 -57.0 -27.9 6.8 0.7 -3.6 89 89 A H H X S+ 0 0 113 -4,-2.2 4,-0.7 2,-0.2 -1,-0.2 0.842 113.8 43.1 -80.0 -36.0 6.9 -1.9 -0.8 90 90 A R H X S+ 0 0 121 -4,-1.4 4,-1.7 -5,-0.3 -2,-0.2 0.785 117.7 47.1 -79.4 -29.1 4.2 -0.2 1.3 91 91 A V H X S+ 0 0 0 -4,-3.0 4,-1.6 2,-0.2 -2,-0.2 0.949 108.5 51.0 -76.6 -53.0 2.0 0.5 -1.8 92 92 A H H X S+ 0 0 19 -4,-1.8 4,-1.8 -5,-0.3 -1,-0.2 0.800 113.3 51.0 -55.0 -29.4 2.2 -3.0 -3.3 93 93 A S H X>S+ 0 0 32 -4,-0.7 4,-2.9 2,-0.2 5,-0.5 0.990 101.5 54.5 -72.4 -65.0 1.2 -4.3 0.1 94 94 A Y H X5S+ 0 0 16 -4,-1.7 4,-1.4 1,-0.2 -2,-0.2 0.805 112.9 50.2 -38.5 -36.1 -1.9 -2.2 0.9 95 95 A L H <>S+ 0 0 0 -4,-1.6 5,-3.0 2,-0.2 6,-0.4 0.997 113.6 38.7 -68.5 -68.1 -3.1 -3.5 -2.5 96 96 A E H ><5S+ 0 0 42 -4,-1.8 3,-2.3 1,-0.3 -2,-0.2 0.919 118.3 50.7 -48.4 -51.3 -2.6 -7.2 -2.1 97 97 A R H 3<5S+ 0 0 192 -4,-2.9 -1,-0.3 1,-0.3 -2,-0.2 0.874 110.9 49.0 -56.0 -39.4 -3.7 -7.1 1.5 98 98 A H T 3<