==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 19-MAY-05 2CPD . COMPND 2 MOLECULE: APOBEC-1 STIMULATING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7781.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 56.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 21.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 17.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 216 A G 0 0 133 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 171.4 -18.2 4.3 28.8 2 217 A S - 0 0 119 1,-0.1 3,-0.1 2,-0.0 0, 0.0 -0.367 360.0-102.9 -76.1 156.9 -19.0 5.7 25.4 3 218 A S - 0 0 132 1,-0.2 2,-0.8 -2,-0.1 -1,-0.1 0.894 47.1-156.2 -43.5 -50.3 -21.8 4.4 23.2 4 219 A G + 0 0 75 0, 0.0 2,-0.4 0, 0.0 -1,-0.2 -0.666 61.9 31.2 108.7 -77.7 -19.2 2.5 21.1 5 220 A S - 0 0 109 -2,-0.8 0, 0.0 1,-0.1 0, 0.0 -0.968 50.6-170.2-123.0 134.0 -20.8 2.0 17.8 6 221 A S - 0 0 113 -2,-0.4 -1,-0.1 2,-0.1 -3,-0.0 0.809 43.6-121.9 -87.7 -34.5 -23.4 4.2 16.1 7 222 A G + 0 0 61 1,-0.2 2,-0.3 0, 0.0 -2,-0.0 0.874 60.5 106.5 89.5 87.7 -24.3 1.8 13.3 8 223 A D - 0 0 124 0, 0.0 2,-0.5 0, 0.0 -1,-0.2 -0.975 59.7-112.0-175.0 173.8 -23.7 3.2 9.8 9 224 A E + 0 0 163 -2,-0.3 3,-0.2 1,-0.1 0, 0.0 -0.927 23.9 172.9-130.1 108.1 -21.6 3.0 6.6 10 225 A D S S+ 0 0 147 -2,-0.5 2,-0.5 1,-0.3 -1,-0.1 0.938 81.3 23.6 -76.1 -50.3 -19.5 6.0 5.7 11 226 A T - 0 0 74 1,-0.1 -1,-0.3 3,-0.0 3,-0.3 -0.908 58.7-177.6-124.1 104.2 -17.6 4.4 2.8 12 227 A M S S+ 0 0 172 -2,-0.5 2,-0.8 1,-0.3 -1,-0.1 0.842 84.8 51.2 -65.7 -34.0 -19.2 1.4 1.1 13 228 A S S S+ 0 0 92 2,-0.0 2,-0.8 0, 0.0 -1,-0.3 -0.757 73.2 176.7-108.8 85.3 -16.2 1.0 -1.2 14 229 A S + 0 0 72 -2,-0.8 2,-0.4 -3,-0.3 -3,-0.0 -0.798 5.8 172.2 -93.6 110.3 -13.1 1.0 1.1 15 230 A V - 0 0 73 -2,-0.8 2,-0.4 2,-0.0 -2,-0.0 -0.968 11.5-174.7-122.5 133.0 -9.9 0.4 -0.9 16 231 A K + 0 0 49 -2,-0.4 42,-0.8 42,-0.2 2,-0.3 -0.965 17.9 148.4-130.5 116.9 -6.4 0.6 0.4 17 232 A I E -A 57 0A 17 -2,-0.4 2,-0.4 40,-0.2 40,-0.2 -0.998 25.4-161.8-147.9 145.3 -3.3 0.2 -1.8 18 233 A L E -A 56 0A 0 38,-1.8 38,-2.4 -2,-0.3 2,-0.4 -0.927 9.6-161.0-133.3 109.2 0.2 1.6 -1.9 19 234 A Y E -AB 55 84A 55 65,-3.0 65,-1.8 -2,-0.4 2,-0.4 -0.740 7.6-158.5 -91.7 133.3 2.3 1.5 -5.1 20 235 A V E -AB 54 83A 0 34,-3.2 34,-1.8 -2,-0.4 2,-0.3 -0.916 9.5-175.7-114.6 137.4 6.1 1.8 -4.8 21 236 A R E +AB 53 82A 146 61,-0.9 61,-1.4 -2,-0.4 32,-0.2 -0.916 58.3 38.7-129.8 156.1 8.4 2.9 -7.6 22 237 A N S S+ 0 0 63 30,-1.2 2,-0.4 -2,-0.3 31,-0.2 0.910 71.8 169.2 73.8 44.3 12.2 3.2 -8.0 23 238 A L - 0 0 9 29,-1.8 2,-0.3 -3,-0.2 -1,-0.2 -0.769 38.4-115.8 -93.7 131.6 13.0 0.1 -6.1 24 239 A M > - 0 0 85 -2,-0.4 3,-1.7 1,-0.2 28,-0.0 -0.482 15.6-136.3 -67.2 123.3 16.5 -1.3 -6.2 25 240 A L T 3 S+ 0 0 128 -2,-0.3 -1,-0.2 1,-0.3 28,-0.0 0.810 107.1 59.4 -48.3 -32.0 16.6 -4.7 -7.9 26 241 A S T 3 S+ 0 0 108 51,-0.1 -1,-0.3 2,-0.1 -2,-0.0 0.856 86.7 94.1 -66.7 -35.8 18.9 -5.7 -5.0 27 242 A T < - 0 0 9 -3,-1.7 2,-0.2 1,-0.1 -4,-0.0 -0.277 67.5-148.2 -59.6 141.7 16.3 -4.9 -2.5 28 243 A S >> - 0 0 74 1,-0.1 4,-1.2 21,-0.0 3,-0.7 -0.675 26.3-104.4-110.6 166.2 14.1 -7.8 -1.4 29 244 A E H >> S+ 0 0 106 1,-0.3 4,-2.9 -2,-0.2 3,-1.4 0.934 117.6 62.8 -52.3 -52.0 10.5 -8.1 -0.3 30 245 A E H 3> S+ 0 0 145 1,-0.3 4,-3.1 2,-0.2 5,-0.3 0.856 102.3 52.0 -41.5 -43.5 11.5 -8.5 3.4 31 246 A M H <> S+ 0 0 58 -3,-0.7 4,-1.9 1,-0.2 -1,-0.3 0.860 112.1 45.5 -64.0 -36.2 13.0 -5.0 3.1 32 247 A I H X S+ 0 0 2 -4,-1.9 3,-1.0 1,-0.2 4,-0.6 0.839 114.8 54.2 -72.6 -34.1 6.3 -0.6 5.8 37 252 A N H 3< S+ 0 0 43 -4,-2.7 3,-0.4 1,-0.2 -2,-0.2 0.827 88.5 77.9 -69.0 -32.2 5.6 -2.8 8.8 38 253 A N T 3< S+ 0 0 120 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.791 91.6 56.7 -47.0 -30.0 7.8 -0.4 10.9 39 254 A I T <4 S- 0 0 69 -3,-1.0 -1,-0.2 -4,-0.3 -2,-0.2 0.961 125.8 -0.2 -68.2 -53.3 4.7 1.8 10.9 40 255 A K S >< S- 0 0 99 -4,-0.6 3,-1.2 -3,-0.4 4,-0.5 -0.998 76.8-112.2-143.8 137.3 2.3 -0.7 12.4 41 256 A P T 3 S- 0 0 108 0, 0.0 -3,-0.1 0, 0.0 -4,-0.0 -0.497 100.2 -2.2 -69.7 126.2 2.7 -4.3 13.6 42 257 A G T 3 S+ 0 0 77 -2,-0.3 -5,-0.0 1,-0.1 3,-0.0 0.882 99.9 118.0 60.9 39.5 0.8 -6.8 11.4 43 258 A A < + 0 0 3 -3,-1.2 16,-0.7 -6,-0.1 2,-0.5 0.816 43.0 87.2-101.1 -45.1 -0.6 -4.0 9.2 44 259 A V E -C 58 0A 16 -4,-0.5 14,-0.3 -11,-0.2 3,-0.1 -0.439 58.7-165.8 -62.2 109.9 0.9 -4.8 5.8 45 260 A E E - 0 0 111 12,-2.2 2,-0.3 -2,-0.5 13,-0.2 0.974 64.9 -21.5 -61.4 -57.7 -1.5 -7.3 4.2 46 261 A R E -C 57 0A 154 11,-0.5 11,-2.0 2,-0.0 2,-0.4 -0.986 53.4-143.8-153.3 158.1 0.8 -8.4 1.4 47 262 A V E -C 56 0A 16 -2,-0.3 2,-0.7 9,-0.2 9,-0.2 -0.959 10.6-171.6-132.4 115.9 3.9 -7.3 -0.5 48 263 A K E -C 55 0A 143 7,-2.3 7,-1.8 -2,-0.4 2,-0.2 -0.896 12.8-155.4-110.3 107.0 4.4 -8.0 -4.2 49 264 A K E -C 54 0A 45 -2,-0.7 2,-0.3 5,-0.2 5,-0.2 -0.495 14.7-175.3 -79.5 148.6 7.8 -7.1 -5.5 50 265 A I - 0 0 41 3,-2.4 -27,-0.1 -2,-0.2 -1,-0.0 -0.855 44.1 -77.0-137.4 172.2 8.4 -6.3 -9.2 51 266 A R S S- 0 0 191 -2,-0.3 -1,-0.1 1,-0.2 3,-0.0 0.868 122.0 -17.9 -31.9 -70.9 11.2 -5.5 -11.6 52 267 A D S S+ 0 0 83 -3,-0.1 -29,-1.8 -32,-0.1 -30,-1.2 0.114 136.1 49.2-128.3 17.8 11.6 -1.9 -10.4 53 268 A Y E -A 21 0A 86 -32,-0.2 -3,-2.4 -31,-0.2 2,-0.3 -0.869 55.8-174.5-146.1 177.9 8.2 -1.5 -8.6 54 269 A A E -AC 20 49A 0 -34,-1.8 -34,-3.2 -2,-0.3 2,-0.4 -0.978 17.9-126.6-170.1 165.0 5.9 -3.2 -6.1 55 270 A F E -AC 19 48A 69 -7,-1.8 -7,-2.3 -2,-0.3 2,-0.4 -0.967 13.2-161.7-127.6 142.2 2.5 -3.0 -4.4 56 271 A V E -AC 18 47A 0 -38,-2.4 -38,-1.8 -2,-0.4 2,-0.2 -0.980 7.1-160.9-127.4 123.4 1.6 -3.0 -0.7 57 272 A H E -AC 17 46A 71 -11,-2.0 -12,-2.2 -2,-0.4 -11,-0.5 -0.650 7.1-164.7-100.0 157.6 -1.9 -3.8 0.6 58 273 A F E - C 0 44A 4 -42,-0.8 -42,-0.2 -14,-0.3 -14,-0.2 -0.847 29.6-123.5-135.0 170.8 -3.3 -3.0 4.1 59 274 A S S S+ 0 0 61 -16,-0.7 2,-0.3 -2,-0.3 -1,-0.1 0.818 97.1 20.6 -84.3 -34.2 -6.2 -3.9 6.3 60 275 A N S > S- 0 0 89 -17,-0.1 4,-2.1 1,-0.1 3,-0.3 -0.993 70.5-128.1-138.7 144.7 -7.6 -0.4 6.6 61 276 A R H > S+ 0 0 131 -2,-0.3 4,-3.2 1,-0.2 5,-0.2 0.893 107.4 64.5 -55.1 -42.5 -7.2 2.8 4.6 62 277 A E H > S+ 0 0 139 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.926 107.0 40.7 -46.5 -55.3 -6.2 4.7 7.8 63 278 A D H > S+ 0 0 34 -3,-0.3 4,-2.7 1,-0.2 5,-0.3 0.948 113.1 53.7 -60.3 -51.3 -3.0 2.6 8.1 64 279 A A H X S+ 0 0 0 -4,-2.1 4,-1.5 1,-0.2 -1,-0.2 0.883 108.4 51.6 -51.2 -42.5 -2.2 2.6 4.4 65 280 A V H X S+ 0 0 38 -4,-3.2 4,-2.1 2,-0.2 5,-0.2 0.936 110.8 46.9 -61.5 -48.6 -2.4 6.4 4.5 66 281 A E H X S+ 0 0 91 -4,-2.0 4,-2.6 1,-0.2 5,-0.3 0.962 113.7 46.3 -58.3 -55.6 -0.0 6.7 7.4 67 282 A A H X S+ 0 0 0 -4,-2.7 4,-1.3 1,-0.2 5,-0.3 0.779 109.5 60.2 -58.7 -26.7 2.5 4.3 5.9 68 283 A M H X S+ 0 0 30 -4,-1.5 4,-2.9 -5,-0.3 -2,-0.2 0.984 114.6 29.2 -65.5 -60.2 2.1 6.2 2.6 69 284 A K H < S+ 0 0 98 -4,-2.1 -2,-0.2 2,-0.2 -3,-0.1 0.969 113.5 62.9 -65.3 -55.2 3.2 9.6 3.9 70 285 A A H < S+ 0 0 46 -4,-2.6 -1,-0.2 1,-0.3 -3,-0.2 0.847 119.5 28.3 -36.4 -47.9 5.6 8.3 6.6 71 286 A L H < S+ 0 0 4 -4,-1.3 3,-0.4 -5,-0.3 -1,-0.3 0.858 91.6 113.8 -84.5 -39.7 7.6 6.7 3.8 72 287 A N S < S+ 0 0 85 -4,-2.9 10,-0.1 -5,-0.3 -4,-0.0 -0.060 87.6 21.4 -37.1 104.7 6.7 9.2 1.1 73 288 A G S S+ 0 0 62 8,-0.9 2,-0.3 1,-0.3 -1,-0.3 0.806 94.0 137.9 99.0 38.2 10.0 10.8 0.4 74 289 A K E -D 81 0B 102 7,-1.0 7,-2.2 -3,-0.4 2,-0.6 -0.780 47.1-138.5-114.4 159.2 12.4 8.2 1.8 75 290 A V E -D 80 0B 97 -2,-0.3 3,-0.5 5,-0.2 2,-0.2 -0.865 24.6-177.5-121.5 97.4 15.7 6.8 0.5 76 291 A L E > S-D 79 0B 29 3,-1.8 3,-1.5 -2,-0.6 -52,-0.1 -0.616 70.3 -3.3 -93.0 153.1 16.0 3.0 0.8 77 292 A D T 3 S- 0 0 75 1,-0.3 -1,-0.2 -2,-0.2 -51,-0.1 0.760 135.9 -55.7 37.7 28.9 19.1 1.0 -0.2 78 293 A G T 3 S+ 0 0 61 -3,-0.5 -1,-0.3 1,-0.2 -2,-0.1 0.917 117.1 109.1 74.0 44.6 20.4 4.4 -1.4 79 294 A S E < S-D 76 0B 8 -3,-1.5 -3,-1.8 -55,-0.0 2,-0.9 -0.967 74.0-112.2-155.0 134.7 17.5 5.2 -3.7 80 295 A P E -D 75 0B 79 0, 0.0 2,-0.3 0, 0.0 -5,-0.2 -0.532 39.7-166.9 -69.8 102.1 14.5 7.6 -3.6 81 296 A I E -D 74 0B 6 -7,-2.2 -7,-1.0 -2,-0.9 -8,-0.9 -0.696 3.1-153.5 -93.9 144.4 11.4 5.5 -3.2 82 297 A E E -B 21 0A 90 -61,-1.4 -61,-0.9 -2,-0.3 2,-0.4 -0.835 5.4-162.3-116.7 154.7 7.9 6.8 -3.7 83 298 A V E +B 20 0A 3 -2,-0.3 2,-0.3 -63,-0.2 -63,-0.2 -0.956 20.0 153.8-141.3 119.4 4.6 5.7 -2.3 84 299 A T E -B 19 0A 70 -65,-1.8 -65,-3.0 -2,-0.4 2,-0.8 -0.879 50.0 -87.2-137.9 169.4 1.1 6.5 -3.6 85 300 A L - 0 0 70 -2,-0.3 -67,-0.2 -67,-0.2 2,-0.1 -0.705 44.6-137.9 -83.8 108.5 -2.4 5.1 -3.7 86 301 A A - 0 0 25 -2,-0.8 -69,-0.1 -69,-0.2 -1,-0.0 -0.374 6.2-140.6 -66.1 140.8 -2.7 2.7 -6.7 87 302 A K - 0 0 189 -2,-0.1 2,-0.1 0, 0.0 -1,-0.1 -0.793 18.8-159.6-108.3 90.6 -5.9 3.0 -8.7 88 303 A P - 0 0 72 0, 0.0 2,-0.2 0, 0.0 -71,-0.0 -0.413 21.8-112.6 -69.8 140.7 -7.0 -0.5 -9.7 89 304 A V + 0 0 149 -2,-0.1 2,-0.3 2,-0.0 0, 0.0 -0.526 50.6 147.6 -76.1 138.3 -9.4 -0.9 -12.6 90 305 A D - 0 0 134 -2,-0.2 2,-0.4 3,-0.0 0, 0.0 -0.983 34.2-139.0-163.7 162.3 -12.9 -2.2 -11.8 91 306 A K - 0 0 183 -2,-0.3 3,-0.1 3,-0.0 -2,-0.0 -0.996 40.9 -92.0-135.3 131.8 -16.6 -2.0 -12.9 92 307 A D - 0 0 156 -2,-0.4 -2,-0.0 1,-0.1 0, 0.0 -0.112 51.9-117.4 -40.9 115.5 -19.7 -1.7 -10.7 93 308 A S - 0 0 120 1,-0.1 2,-0.5 0, 0.0 -1,-0.1 -0.296 24.1-127.2 -60.8 141.2 -20.7 -5.4 -10.3 94 309 A S + 0 0 125 -3,-0.1 -1,-0.1 2,-0.0 -3,-0.0 -0.801 46.1 136.0 -96.2 129.0 -24.1 -6.2 -11.8 95 310 A G - 0 0 60 -2,-0.5 2,-0.5 0, 0.0 3,-0.1 -0.857 57.2 -45.4-153.1-172.6 -26.7 -7.9 -9.5 96 311 A P - 0 0 114 0, 0.0 3,-0.2 0, 0.0 -2,-0.0 -0.530 39.9-157.6 -69.8 114.7 -30.3 -8.1 -8.3 97 312 A S S S+ 0 0 126 -2,-0.5 2,-1.1 1,-0.2 -3,-0.0 0.937 88.1 49.0 -56.8 -50.3 -31.6 -4.6 -7.6 98 313 A S 0 0 121 1,-0.1 -1,-0.2 -3,-0.1 0, 0.0 -0.727 360.0 360.0 -96.0 88.2 -34.3 -5.8 -5.3 99 314 A G 0 0 114 -2,-1.1 -1,-0.1 -3,-0.2 -2,-0.1 0.309 360.0 360.0-139.7 360.0 -32.5 -8.2 -3.0