==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-MAY-05 2CPF . COMPND 2 MOLECULE: RNA BINDING MOTIF PROTEIN 19; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7022.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 60.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 23.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 355 A G 0 0 136 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 64.0 -21.9 12.0 10.8 2 356 A S - 0 0 117 3,-0.0 2,-0.5 0, 0.0 3,-0.0 -0.757 360.0-173.2-165.2 112.2 -18.8 12.7 8.6 3 357 A S + 0 0 135 -2,-0.2 0, 0.0 1,-0.1 0, 0.0 -0.937 51.5 64.4-113.9 126.2 -18.1 11.5 5.0 4 358 A G + 0 0 45 -2,-0.5 2,-0.3 56,-0.1 -1,-0.1 0.367 48.6 152.3 127.3 97.7 -14.8 12.2 3.3 5 359 A S - 0 0 70 55,-0.1 2,-0.3 2,-0.1 59,-0.1 -0.994 32.4-129.1-149.7 151.5 -11.4 10.8 4.4 6 360 A S + 0 0 60 -2,-0.3 50,-0.1 57,-0.1 2,-0.1 -0.748 59.2 67.6-103.1 150.0 -8.1 9.9 2.8 7 361 A G - 0 0 1 -2,-0.3 78,-0.4 53,-0.1 2,-0.3 -0.135 48.9-146.5 119.3 144.5 -6.2 6.7 3.2 8 362 A L E -A 55 0A 0 47,-1.3 47,-2.8 76,-0.2 2,-0.5 -0.948 7.6-146.9-148.9 123.9 -6.6 3.0 2.2 9 363 A F E -AB 54 83A 45 74,-3.1 74,-2.7 -2,-0.3 2,-0.4 -0.771 16.9-165.8 -93.6 130.5 -5.5 -0.1 4.0 10 364 A I E -AB 53 82A 0 43,-2.3 43,-1.5 -2,-0.5 2,-0.3 -0.917 4.6-172.9-118.2 142.8 -4.5 -3.1 1.9 11 365 A K E +AB 52 81A 40 70,-1.0 70,-1.8 -2,-0.4 41,-0.2 -0.843 59.6 38.6-128.7 165.8 -4.0 -6.8 3.0 12 366 A N S S+ 0 0 80 39,-0.9 2,-0.7 -2,-0.3 40,-0.2 0.932 70.1 175.6 60.9 47.8 -2.7 -10.0 1.5 13 367 A L - 0 0 5 38,-1.8 38,-0.2 -3,-0.2 -1,-0.2 -0.778 34.6-119.1 -90.8 113.5 0.1 -8.2 -0.3 14 368 A N > - 0 0 37 -2,-0.7 3,-1.3 1,-0.2 35,-0.1 -0.269 16.3-131.5 -52.2 121.5 2.4 -10.6 -2.1 15 369 A F T 3 S+ 0 0 158 1,-0.3 34,-0.5 33,-0.1 -1,-0.2 0.801 109.9 57.3 -44.9 -32.1 5.9 -10.2 -0.6 16 370 A S T 3 S+ 0 0 97 32,-0.1 -1,-0.3 60,-0.1 -2,-0.1 0.897 85.2 99.2 -68.2 -41.3 7.1 -10.1 -4.2 17 371 A T < - 0 0 12 -3,-1.3 32,-0.3 1,-0.1 2,-0.2 -0.056 62.2-154.1 -46.3 146.6 4.8 -7.1 -5.0 18 372 A T > - 0 0 67 1,-0.1 4,-1.5 30,-0.1 5,-0.1 -0.691 27.2-109.8-121.2 174.7 6.5 -3.7 -5.0 19 373 A E H > S+ 0 0 75 -2,-0.2 4,-2.5 2,-0.2 5,-0.2 0.870 113.0 59.7 -72.0 -38.1 5.5 -0.1 -4.4 20 374 A E H > S+ 0 0 150 2,-0.2 4,-2.0 1,-0.2 3,-0.2 0.966 107.9 42.7 -54.0 -59.8 6.0 0.8 -8.1 21 375 A T H > S+ 0 0 77 1,-0.2 4,-2.5 2,-0.2 5,-0.3 0.910 111.9 55.6 -54.2 -46.1 3.5 -1.7 -9.4 22 376 A L H X S+ 0 0 9 -4,-1.5 4,-2.3 1,-0.2 5,-0.2 0.912 106.6 50.4 -54.0 -46.0 1.1 -0.7 -6.6 23 377 A K H X S+ 0 0 76 -4,-2.5 4,-2.0 1,-0.2 -1,-0.2 0.893 109.7 51.6 -60.6 -41.1 1.2 2.9 -7.6 24 378 A G H X S+ 0 0 35 -4,-2.0 4,-0.6 2,-0.2 -2,-0.2 0.951 110.8 45.3 -61.7 -51.9 0.5 2.0 -11.2 25 379 A V H >< S+ 0 0 32 -4,-2.5 3,-0.5 1,-0.2 4,-0.3 0.879 121.2 40.1 -59.8 -39.3 -2.6 -0.1 -10.5 26 380 A F H >X S+ 0 0 4 -4,-2.3 4,-1.2 -5,-0.3 3,-0.7 0.702 102.6 71.0 -82.2 -21.2 -3.8 2.6 -8.1 27 381 A S H 3< S+ 0 0 68 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.656 84.5 72.4 -68.9 -14.8 -2.7 5.4 -10.5 28 382 A K T << S+ 0 0 172 -4,-0.6 -1,-0.2 -3,-0.5 -2,-0.2 0.896 97.7 45.8 -66.8 -41.3 -5.5 4.3 -12.8 29 383 A V T <4 S- 0 0 24 -3,-0.7 2,-0.3 -4,-0.3 -2,-0.2 0.940 128.7 -58.6 -67.5 -48.9 -8.2 5.8 -10.5 30 384 A G S < S- 0 0 14 -4,-1.2 2,-0.4 32,-0.0 -1,-0.2 -0.961 75.3 -37.5-174.7-171.1 -6.3 9.1 -9.9 31 385 A A - 0 0 51 -2,-0.3 27,-1.4 -3,-0.1 2,-0.4 -0.572 56.5-134.2 -74.0 123.1 -3.2 10.8 -8.7 32 386 A I E -C 57 0A 26 -2,-0.4 25,-0.3 25,-0.2 3,-0.1 -0.633 13.0-163.4 -81.2 130.3 -1.7 9.2 -5.7 33 387 A K E S- 0 0 110 23,-0.9 2,-0.3 -2,-0.4 24,-0.2 0.943 72.1 -15.4 -76.3 -51.2 -0.7 11.5 -2.9 34 388 A S E -C 56 0A 47 22,-0.6 22,-2.1 2,-0.0 2,-0.5 -0.944 57.4-161.5-159.3 134.0 1.5 9.1 -0.9 35 389 A C E +C 55 0A 14 -2,-0.3 2,-0.4 20,-0.2 20,-0.2 -0.975 15.8 166.2-123.1 126.8 2.0 5.3 -0.9 36 390 A T E -C 54 0A 80 18,-2.6 18,-2.9 -2,-0.5 2,-0.3 -0.961 16.8-157.6-143.5 122.4 3.7 3.4 1.9 37 391 A I E -C 53 0A 6 -2,-0.4 2,-1.4 16,-0.3 16,-0.3 -0.781 37.1 -99.5-101.0 142.8 3.7 -0.4 2.5 38 392 A S E + 0 0 43 14,-1.5 12,-0.8 -2,-0.3 2,-0.4 -0.390 61.6 160.5 -60.8 91.6 4.3 -2.0 5.8 39 393 A K E -C 49 0A 46 -2,-1.4 2,-0.3 10,-0.2 10,-0.2 -0.962 15.9-176.7-121.9 135.3 7.9 -2.9 5.4 40 394 A K E -C 48 0A 122 8,-1.1 8,-1.1 -2,-0.4 2,-0.9 -0.796 37.6 -91.7-124.6 167.4 10.5 -3.7 8.1 41 395 A K E -C 47 0A 144 -2,-0.3 6,-0.1 6,-0.1 2,-0.0 -0.704 47.7-167.9 -83.7 106.8 14.2 -4.5 8.3 42 396 A N > - 0 0 47 -2,-0.9 3,-1.0 4,-0.9 5,-0.0 -0.214 46.0 -74.4 -85.0 179.3 14.6 -8.3 8.1 43 397 A K T 3 S+ 0 0 214 1,-0.3 -2,-0.0 2,-0.1 -1,-0.0 0.869 139.2 45.2 -39.4 -49.0 17.7 -10.4 8.8 44 398 A A T 3 S- 0 0 74 2,-0.1 -1,-0.3 1,-0.1 -3,-0.1 0.832 112.3-125.4 -67.0 -32.9 19.1 -9.2 5.4 45 399 A G < + 0 0 40 -3,-1.0 2,-0.3 1,-0.3 -2,-0.1 0.697 60.2 140.8 93.5 22.4 18.0 -5.6 6.2 46 400 A V - 0 0 79 -6,-0.1 2,-1.1 1,-0.0 -4,-0.9 -0.782 61.2-109.5-101.3 143.0 16.0 -5.1 3.1 47 401 A L E + C 0 41A 81 -2,-0.3 2,-0.4 -6,-0.1 -6,-0.1 -0.560 50.9 168.2 -72.2 99.7 12.7 -3.2 2.9 48 402 A L E - C 0 40A 85 -8,-1.1 -8,-1.1 -2,-1.1 -32,-0.1 -0.929 36.0-108.2-118.5 140.6 10.1 -6.0 2.3 49 403 A S E - C 0 39A 8 -34,-0.5 -10,-0.2 -2,-0.4 -9,-0.1 -0.072 14.4-144.9 -58.1 162.9 6.3 -5.8 2.5 50 404 A M E - 0 0 83 -12,-0.8 -38,-0.1 2,-0.7 -1,-0.1 0.139 59.3 -84.1-117.0 16.3 4.5 -7.5 5.4 51 405 A G E S+ 0 0 11 -38,-0.2 -38,-1.8 1,-0.2 -39,-0.9 0.481 109.5 60.0 94.2 3.8 1.4 -8.5 3.4 52 406 A F E +A 11 0A 61 -14,-0.3 -14,-1.5 -41,-0.2 -2,-0.7 -0.989 55.0 170.5-158.3 157.1 -0.3 -5.2 3.9 53 407 A G E -AC 10 37A 3 -43,-1.5 -43,-2.3 -2,-0.3 2,-0.4 -0.863 29.0-109.9-153.9-173.0 0.2 -1.5 3.2 54 408 A F E -AC 9 36A 71 -18,-2.9 -18,-2.6 -2,-0.2 2,-0.4 -0.966 23.2-166.6-137.4 119.3 -1.3 2.0 3.2 55 409 A V E -AC 8 35A 0 -47,-2.8 -47,-1.3 -2,-0.4 2,-0.3 -0.862 5.7-161.3-107.5 138.5 -2.3 4.0 0.1 56 410 A E E - C 0 34A 57 -22,-2.1 -23,-0.9 -2,-0.4 -22,-0.6 -0.876 1.9-156.6-118.6 150.7 -3.1 7.7 0.1 57 411 A Y E - C 0 32A 3 -2,-0.3 -25,-0.2 -25,-0.3 4,-0.0 -0.815 27.9-120.9-122.6 163.1 -5.0 9.8 -2.5 58 412 A K S S+ 0 0 121 -27,-1.4 -26,-0.1 -2,-0.3 -1,-0.1 0.814 101.0 23.6 -70.7 -30.9 -5.1 13.5 -3.3 59 413 A K S > S- 0 0 139 -28,-0.2 4,-1.5 1,-0.1 5,-0.2 -0.996 78.3-120.9-139.6 143.7 -8.8 13.6 -2.7 60 414 A P H > S+ 0 0 54 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.855 110.8 60.4 -46.6 -42.0 -11.2 11.5 -0.5 61 415 A E H >> S+ 0 0 150 2,-0.2 4,-2.1 1,-0.2 3,-0.8 0.974 99.6 51.6 -51.7 -67.0 -13.2 10.7 -3.7 62 416 A Q H 3> S+ 0 0 56 1,-0.3 4,-2.8 2,-0.2 5,-0.3 0.859 113.1 47.6 -37.8 -48.5 -10.4 9.0 -5.6 63 417 A A H 3X S+ 0 0 2 -4,-1.5 4,-1.6 1,-0.2 -1,-0.3 0.887 106.8 56.5 -63.2 -40.1 -9.8 6.8 -2.5 64 418 A Q H X S+ 0 0 91 -4,-2.1 4,-3.1 -3,-0.2 3,-0.6 0.966 112.5 50.3 -79.0 -60.1 -13.4 4.8 -5.8 66 420 A A H 3X S+ 0 0 0 -4,-2.8 4,-1.6 1,-0.2 5,-0.3 0.754 98.3 77.3 -50.3 -24.5 -10.1 2.9 -5.8 67 421 A L H 3< S+ 0 0 33 -4,-1.6 4,-0.2 -5,-0.3 -1,-0.2 0.969 119.6 3.2 -50.1 -66.9 -11.5 1.3 -2.7 68 422 A K H << S+ 0 0 150 -4,-0.7 -2,-0.2 -3,-0.6 3,-0.2 0.804 125.5 69.5 -91.0 -35.2 -13.9 -1.1 -4.4 69 423 A Q H < S+ 0 0 118 -4,-3.1 -3,-0.2 1,-0.3 -2,-0.2 0.882 110.8 35.0 -49.6 -43.1 -12.9 -0.2 -8.0 70 424 A L S >< S+ 0 0 22 -4,-1.6 3,-1.6 -5,-0.4 -1,-0.3 0.661 98.8 107.0 -85.8 -18.3 -9.5 -1.9 -7.4 71 425 A Q T 3 S+ 0 0 66 -5,-0.3 3,-0.1 -4,-0.2 10,-0.1 -0.308 79.6 24.3 -62.2 142.4 -11.1 -4.5 -5.2 72 426 A G T 3 S+ 0 0 38 8,-0.6 -1,-0.2 1,-0.3 2,-0.2 0.179 84.5 144.6 88.3 -18.7 -11.3 -8.0 -6.7 73 427 A H < - 0 0 98 -3,-1.6 2,-1.2 1,-0.1 7,-0.5 -0.352 56.9-122.3 -57.8 121.9 -8.4 -7.2 -9.1 74 428 A T E +D 79 0B 101 -2,-0.2 2,-0.5 5,-0.1 3,-0.2 -0.540 39.8 178.0 -71.1 96.7 -6.4 -10.3 -9.6 75 429 A V E > -D 78 0B 19 3,-1.6 3,-2.2 -2,-1.2 -61,-0.1 -0.904 67.6 -14.6-107.6 123.1 -2.9 -9.2 -8.5 76 430 A D T 3 S- 0 0 78 -2,-0.5 -1,-0.2 1,-0.3 3,-0.1 0.799 123.3 -64.0 59.1 28.8 -0.1 -11.7 -8.5 77 431 A G T 3 S+ 0 0 62 1,-0.2 2,-0.3 -3,-0.2 -1,-0.3 0.412 124.3 92.6 76.6 -4.2 -2.7 -14.4 -8.8 78 432 A H E < S-D 75 0B 102 -3,-2.2 -3,-1.6 -5,-0.1 2,-0.3 -0.920 75.3-122.0-124.1 149.3 -4.0 -13.4 -5.4 79 433 A K E -D 74 0B 129 -2,-0.3 2,-0.2 -5,-0.2 -5,-0.1 -0.695 23.9-139.7 -91.0 140.1 -6.7 -11.0 -4.3 80 434 A L - 0 0 22 -7,-0.5 2,-0.8 -2,-0.3 -8,-0.6 -0.656 11.2-126.2 -97.9 154.6 -5.9 -8.1 -2.0 81 435 A E E -B 11 0A 82 -70,-1.8 -70,-1.0 -2,-0.2 2,-0.4 -0.856 26.5-168.6-104.5 103.4 -8.1 -6.8 0.8 82 436 A V E +B 10 0A 7 -2,-0.8 2,-0.3 -72,-0.2 -72,-0.2 -0.770 11.1 171.3 -94.2 132.7 -8.8 -3.1 0.5 83 437 A R E -B 9 0A 122 -74,-2.7 -74,-3.1 -2,-0.4 2,-1.2 -0.977 43.7 -97.1-140.0 152.2 -10.4 -1.2 3.4 84 438 A I - 0 0 33 -2,-0.3 -76,-0.2 -76,-0.2 3,-0.1 -0.541 49.3-129.0 -71.4 96.3 -11.1 2.4 4.3 85 439 A S S S+ 0 0 21 -2,-1.2 -1,-0.1 -78,-0.4 -31,-0.0 0.061 90.8 41.3 -41.2 154.5 -8.1 3.3 6.5 86 440 A E S S+ 0 0 184 1,-0.2 2,-0.4 2,-0.1 -1,-0.2 0.809 82.0 159.7 71.0 30.3 -8.9 4.9 9.8 87 441 A R - 0 0 142 2,-0.2 -1,-0.2 1,-0.1 -2,-0.0 -0.726 46.7-134.1 -89.8 132.0 -11.8 2.5 10.3 88 442 A A S S+ 0 0 98 -2,-0.4 2,-0.2 2,-0.1 -1,-0.1 0.917 88.5 81.5 -46.1 -53.2 -13.1 1.9 13.8 89 443 A T S S- 0 0 106 1,-0.1 -2,-0.2 -3,-0.1 -3,-0.0 -0.376 81.3-137.1 -60.4 125.5 -13.1 -1.9 13.3 90 444 A K - 0 0 189 -2,-0.2 2,-0.2 1,-0.1 -1,-0.1 -0.621 21.3-104.7 -87.9 144.6 -9.7 -3.3 13.8 91 445 A P - 0 0 85 0, 0.0 2,-1.0 0, 0.0 -1,-0.1 -0.476 25.5-141.0 -69.8 130.6 -8.2 -6.0 11.5 92 446 A A - 0 0 101 -2,-0.2 2,-0.8 2,-0.0 -2,-0.0 -0.781 18.1-169.4 -97.2 95.9 -8.2 -9.5 12.9 93 447 A S - 0 0 87 -2,-1.0 0, 0.0 1,-0.0 0, 0.0 -0.759 9.9-157.0 -89.2 110.2 -4.9 -11.1 11.7 94 448 A G - 0 0 64 -2,-0.8 -1,-0.0 1,-0.1 -2,-0.0 -0.316 21.9 -93.2 -82.2 167.7 -5.0 -14.8 12.5 95 449 A P - 0 0 133 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.013 23.3-160.6 -69.8 179.3 -2.0 -17.1 12.9 96 450 A S + 0 0 124 1,-0.1 2,-0.1 0, 0.0 -2,-0.0 0.605 66.2 58.8-128.5 -53.1 -0.3 -19.2 10.2 97 451 A S 0 0 117 1,-0.1 -1,-0.1 0, 0.0 0, 0.0 -0.310 360.0 360.0 -80.1 166.7 1.7 -22.0 11.8 98 452 A G 0 0 128 -3,-0.1 -1,-0.1 -2,-0.1 0, 0.0 -0.989 360.0 360.0 147.3 360.0 0.4 -24.7 14.1