==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-MAY-05 2CPH . COMPND 2 MOLECULE: RNA BINDING MOTIF PROTEIN 19; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 107 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8407.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 57.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 16.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 19 17.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 16.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 447 A G 0 0 133 0, 0.0 2,-0.6 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 91.2 -13.7 -9.4 -12.1 2 448 A S + 0 0 125 2,-0.0 2,-0.8 0, 0.0 0, 0.0 -0.828 360.0 166.2-120.2 92.3 -11.3 -6.5 -12.3 3 449 A S + 0 0 121 -2,-0.6 2,-0.3 1,-0.1 0, 0.0 -0.836 4.7 160.1-109.7 95.6 -8.9 -6.8 -15.2 4 450 A G + 0 0 79 -2,-0.8 2,-1.0 2,-0.0 -1,-0.1 -0.468 14.7 145.0-112.8 60.5 -7.2 -3.5 -15.8 5 451 A S + 0 0 109 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.722 37.1 99.4-100.0 84.9 -4.1 -4.6 -17.9 6 452 A S + 0 0 127 -2,-1.0 2,-0.2 2,-0.0 -2,-0.0 -0.965 28.4 107.8-156.8 168.9 -3.6 -1.7 -20.3 7 453 A G - 0 0 50 -2,-0.3 -2,-0.0 3,-0.0 0, 0.0 -0.491 63.8 -55.0 133.6 156.5 -1.5 1.4 -20.9 8 454 A Q S S- 0 0 131 -2,-0.2 3,-0.1 1,-0.1 -2,-0.0 0.185 89.9 -41.8 -49.3 178.7 1.3 2.8 -23.0 9 455 A V S S- 0 0 124 1,-0.1 2,-0.1 0, 0.0 -1,-0.1 -0.031 76.4 -94.3 -45.6 147.4 4.6 1.0 -23.3 10 456 A P - 0 0 125 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.433 37.2-132.0 -69.8 137.8 6.0 -0.4 -20.0 11 457 A K - 0 0 179 2,-0.2 4,-0.0 -2,-0.1 0, 0.0 -0.697 19.6-115.3 -93.3 143.6 8.4 1.8 -18.1 12 458 A K S S+ 0 0 219 -2,-0.3 2,-0.4 2,-0.0 -1,-0.1 0.892 106.0 52.8 -37.3 -60.3 11.7 0.4 -16.7 13 459 A Q S S- 0 0 128 -3,-0.0 2,-0.2 1,-0.0 -2,-0.2 -0.695 85.3-142.0 -85.9 129.2 10.5 1.0 -13.1 14 460 A T - 0 0 78 -2,-0.4 2,-0.6 1,-0.1 -2,-0.0 -0.569 33.7 -86.3 -89.6 153.4 7.2 -0.5 -12.2 15 461 A T - 0 0 66 -2,-0.2 2,-1.0 1,-0.1 -1,-0.1 -0.419 43.5-164.5 -60.9 107.2 4.6 1.2 -10.0 16 462 A S + 0 0 19 -2,-0.6 49,-0.4 49,-0.1 2,-0.3 -0.750 35.0 131.1 -99.7 88.9 5.6 0.1 -6.4 17 463 A K - 0 0 70 -2,-1.0 77,-1.1 47,-0.1 2,-0.8 -0.908 38.7-159.4-144.2 112.4 2.7 0.9 -4.2 18 464 A I E -AB 63 93A 1 45,-2.4 45,-2.8 -2,-0.3 2,-0.8 -0.816 9.7-171.9 -95.7 109.5 1.2 -1.5 -1.7 19 465 A L E -AB 62 92A 7 73,-2.3 73,-1.6 -2,-0.8 2,-0.6 -0.861 7.2-159.1-105.1 103.8 -2.4 -0.5 -0.8 20 466 A V E -AB 61 91A 0 41,-1.8 41,-2.7 -2,-0.8 71,-0.2 -0.717 16.5-179.2 -85.3 120.0 -3.8 -2.6 2.0 21 467 A R E +AB 60 90A 120 69,-2.8 69,-2.2 -2,-0.6 39,-0.3 -0.589 53.5 46.8-111.7 174.9 -7.6 -2.7 2.2 22 468 A N S S+ 0 0 84 37,-1.8 -1,-0.2 67,-0.2 38,-0.2 0.896 74.4 174.2 60.4 41.8 -10.1 -4.3 4.5 23 469 A I - 0 0 3 -3,-0.2 -1,-0.2 66,-0.1 65,-0.1 -0.619 30.9-114.3 -84.5 138.6 -8.2 -3.1 7.5 24 470 A P > - 0 0 3 0, 0.0 3,-1.4 0, 0.0 -1,-0.1 -0.332 20.1-118.1 -69.7 150.6 -9.8 -3.7 11.0 25 471 A F T 3 S+ 0 0 142 1,-0.3 32,-0.1 60,-0.1 60,-0.1 0.628 116.3 60.7 -63.2 -11.7 -10.8 -0.7 13.2 26 472 A Q T 3 S+ 0 0 123 58,-0.1 -1,-0.3 59,-0.1 2,-0.1 0.729 84.3 95.1 -86.7 -25.2 -8.2 -2.0 15.6 27 473 A A < - 0 0 0 -3,-1.4 2,-0.3 57,-0.1 3,-0.1 -0.411 56.6-174.5 -69.2 141.6 -5.4 -1.6 13.1 28 474 A N > - 0 0 96 -2,-0.1 4,-2.1 1,-0.1 5,-0.3 -0.833 41.1 -91.4-132.4 170.3 -3.4 1.7 13.4 29 475 A Q H > S+ 0 0 75 -2,-0.3 4,-3.2 1,-0.3 3,-0.2 0.935 127.4 45.5 -44.6 -61.4 -0.6 3.5 11.5 30 476 A R H > S+ 0 0 195 1,-0.2 4,-2.1 2,-0.2 5,-0.5 0.870 107.7 61.5 -52.0 -40.0 2.1 2.0 13.7 31 477 A E H > S+ 0 0 66 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.952 114.2 31.7 -52.2 -56.8 0.4 -1.4 13.3 32 478 A I H X S+ 0 0 0 -4,-2.1 4,-2.3 -3,-0.2 5,-0.5 0.935 111.6 65.8 -68.2 -47.8 0.8 -1.4 9.5 33 479 A R H X S+ 0 0 75 -4,-3.2 4,-3.1 -5,-0.3 3,-0.4 0.903 115.6 27.9 -37.8 -64.6 4.1 0.5 9.5 34 480 A E H X S+ 0 0 126 -4,-2.1 4,-3.0 2,-0.2 5,-0.3 0.937 110.1 70.1 -66.6 -48.2 5.9 -2.3 11.3 35 481 A L H < S+ 0 0 41 -4,-2.1 -1,-0.2 -5,-0.5 -2,-0.2 0.815 119.4 22.4 -37.8 -38.5 3.7 -5.0 9.9 36 482 A F H >X S+ 0 0 0 -4,-2.3 3,-2.5 -3,-0.4 4,-1.1 0.816 114.9 66.4 -98.6 -42.4 5.4 -4.3 6.6 37 483 A S H >< S+ 0 0 20 -4,-3.1 3,-0.8 -5,-0.5 -3,-0.2 0.882 89.2 69.1 -46.4 -44.7 8.6 -2.7 7.8 38 484 A T T 3< S+ 0 0 104 -4,-3.0 -1,-0.3 1,-0.3 -2,-0.1 0.809 101.3 47.9 -45.2 -33.4 9.6 -6.0 9.2 39 485 A F T <4 S- 0 0 62 -3,-2.5 -1,-0.3 -5,-0.3 2,-0.3 0.838 132.2 -44.1 -78.2 -35.0 9.9 -7.1 5.6 40 486 A G S << S- 0 0 17 -4,-1.1 -1,-0.3 -3,-0.8 2,-0.1 -0.978 78.6 -48.0 179.3 173.4 12.0 -4.1 4.6 41 487 A E - 0 0 106 -2,-0.3 25,-1.7 -3,-0.1 2,-0.5 -0.370 51.9-145.6 -62.0 131.8 12.4 -0.3 4.7 42 488 A L E -C 65 0A 4 23,-0.2 23,-0.3 1,-0.2 3,-0.2 -0.885 8.5-148.2-105.8 128.3 9.2 1.5 4.0 43 489 A K E S- 0 0 132 21,-1.7 2,-0.3 -2,-0.5 22,-0.2 0.945 79.0 -26.7 -55.4 -52.5 9.2 4.9 2.2 44 490 A T E -C 64 0A 66 20,-0.7 20,-1.2 2,-0.0 2,-0.7 -0.852 53.7-141.8-169.4 129.8 6.2 6.2 4.0 45 491 A V E -C 63 0A 20 -2,-0.3 2,-0.5 -3,-0.2 18,-0.2 -0.854 21.5-169.8-100.8 110.5 3.2 4.6 5.8 46 492 A R E +C 62 0A 124 16,-2.2 16,-2.2 -2,-0.7 -2,-0.0 -0.852 9.7 171.4-103.0 131.9 0.0 6.6 5.3 47 493 A L - 0 0 36 -2,-0.5 2,-0.2 14,-0.2 14,-0.1 -0.991 36.2-102.6-140.4 147.1 -3.1 5.8 7.3 48 494 A P - 0 0 27 0, 0.0 2,-0.4 0, 0.0 -19,-0.1 -0.462 34.3-154.8 -69.7 133.2 -6.6 7.5 7.7 49 495 A K - 0 0 189 -2,-0.2 8,-0.1 8,-0.1 -21,-0.0 -0.920 29.3 -95.1-114.2 136.1 -7.0 9.4 11.0 50 496 A K - 0 0 160 -2,-0.4 2,-0.3 1,-0.1 6,-0.2 -0.160 48.7-169.5 -46.6 129.3 -10.4 10.0 12.7 51 497 A M - 0 0 133 4,-0.7 2,-0.2 5,-0.2 -1,-0.1 -0.938 41.0 -72.0-127.9 150.1 -11.7 13.4 11.6 52 498 A T S S+ 0 0 136 -2,-0.3 2,-0.3 4,-0.0 4,-0.0 -0.094 106.0 44.8 -39.8 95.1 -14.5 15.6 12.9 53 499 A G S S- 0 0 58 -2,-0.2 -2,-0.1 0, 0.0 2,-0.1 -0.911 101.2 -29.9 152.9-178.9 -17.4 13.6 11.5 54 500 A T S S+ 0 0 131 -2,-0.3 -3,-0.1 -4,-0.1 0, 0.0 -0.395 105.5 29.4 -67.0 139.2 -18.8 10.1 11.0 55 501 A G - 0 0 43 -2,-0.1 -4,-0.7 -5,-0.1 3,-0.1 0.607 58.4-157.5 81.3 124.2 -16.2 7.3 10.7 56 502 A A S S+ 0 0 40 1,-0.3 2,-0.6 -6,-0.2 -5,-0.2 0.883 76.1 10.9 -95.0 -75.0 -12.8 7.4 12.4 57 503 A H S S- 0 0 18 -7,-0.1 -1,-0.3 -8,-0.1 -8,-0.1 -0.924 74.8-150.5-114.9 110.4 -10.4 5.0 10.6 58 504 A R - 0 0 148 -2,-0.6 2,-0.6 -3,-0.1 -8,-0.0 0.054 30.9 -97.8 -64.8-178.7 -11.5 3.6 7.3 59 505 A G S S+ 0 0 33 -37,-0.1 -37,-1.8 2,-0.0 2,-0.3 -0.469 89.4 87.1-104.1 61.2 -10.4 0.2 6.0 60 506 A F E -A 21 0A 77 -2,-0.6 2,-0.3 -39,-0.3 -39,-0.2 -0.957 45.8-179.9-158.4 136.5 -7.6 1.3 3.7 61 507 A G E -A 20 0A 1 -41,-2.7 -41,-1.8 -2,-0.3 2,-0.5 -0.998 18.6-140.4-142.4 144.9 -3.9 2.0 4.0 62 508 A F E -AC 19 46A 62 -16,-2.2 -16,-2.2 -2,-0.3 2,-0.5 -0.901 18.7-176.7-108.0 127.4 -1.0 3.0 1.8 63 509 A V E -AC 18 45A 3 -45,-2.8 -45,-2.4 -2,-0.5 2,-0.4 -0.978 4.0-167.9-127.2 122.3 2.4 1.5 2.1 64 510 A D E - C 0 44A 42 -20,-1.2 -21,-1.7 -2,-0.5 -20,-0.7 -0.894 7.2-154.3-111.2 137.5 5.4 2.5 0.1 65 511 A F E - C 0 42A 2 -2,-0.4 -23,-0.2 -49,-0.4 -49,-0.1 -0.649 23.9-121.7-105.8 164.0 8.7 0.6 -0.1 66 512 A I S S+ 0 0 74 -25,-1.7 2,-0.3 -2,-0.2 -24,-0.1 0.915 95.2 16.1 -69.1 -44.4 12.3 1.7 -0.8 67 513 A T S > S- 0 0 59 -26,-0.3 4,-1.5 1,-0.1 5,-0.1 -0.886 77.7-113.9-129.6 160.7 12.7 -0.6 -3.8 68 514 A K H > S+ 0 0 82 -2,-0.3 4,-2.4 2,-0.2 5,-0.2 0.917 113.6 56.8 -57.6 -45.8 10.4 -2.6 -6.1 69 515 A Q H >> S+ 0 0 141 1,-0.2 4,-2.8 2,-0.2 3,-1.0 0.966 105.2 47.6 -49.6 -66.9 11.9 -5.9 -4.8 70 516 A D H 3> S+ 0 0 43 1,-0.3 4,-1.7 2,-0.2 -1,-0.2 0.820 114.5 50.5 -45.2 -34.9 11.1 -5.2 -1.1 71 517 A A H 3X S+ 0 0 0 -4,-1.5 4,-2.6 2,-0.2 -1,-0.3 0.854 111.6 46.6 -73.5 -36.2 7.6 -4.3 -2.3 72 518 A K H < S+ 0 0 15 -4,-2.2 3,-1.2 2,-0.1 -2,-0.2 0.854 114.2 66.3 -99.4 -53.1 1.3 -10.8 3.1 79 525 A C H 3< S+ 0 0 31 -4,-3.0 3,-0.4 -5,-0.4 -3,-0.2 0.856 92.0 67.9 -35.2 -52.1 -1.1 -10.9 0.1 80 526 A H T 3< S- 0 0 150 -4,-2.3 -1,-0.3 1,-0.2 2,-0.2 0.883 129.9 -27.1 -35.3 -61.4 -1.0 -14.7 0.3 81 527 A S < + 0 0 70 -3,-1.2 2,-0.5 -4,-0.3 -1,-0.2 -0.699 67.6 171.4-166.2 106.9 -2.8 -14.7 3.6 82 528 A T - 0 0 11 7,-0.5 7,-2.2 -3,-0.4 2,-0.6 -0.956 7.8-173.0-125.6 114.6 -2.8 -12.0 6.2 83 529 A H B +D 88 0B 136 -2,-0.5 2,-0.5 5,-0.2 5,-0.2 -0.923 7.0 174.5-110.5 120.6 -5.1 -12.1 9.3 84 530 A L S S- 0 0 23 3,-3.0 3,-0.3 -2,-0.6 -57,-0.1 -0.969 71.9 -16.0-129.6 118.1 -5.3 -9.2 11.6 85 531 A Y S S- 0 0 111 -2,-0.5 -1,-0.1 1,-0.2 3,-0.1 0.823 131.1 -50.4 61.6 31.8 -7.7 -9.0 14.5 86 532 A G S S+ 0 0 78 1,-0.2 2,-0.4 -62,-0.0 -1,-0.2 0.791 117.0 115.5 77.3 28.4 -9.7 -11.8 12.9 87 533 A R - 0 0 109 -3,-0.3 -3,-3.0 -63,-0.0 2,-1.1 -0.996 65.4-130.9-134.6 135.3 -9.8 -10.1 9.5 88 534 A R B -D 83 0B 127 -2,-0.4 -5,-0.2 -5,-0.2 -3,-0.0 -0.715 29.6-144.0 -87.0 99.2 -8.3 -11.2 6.2 89 535 A L - 0 0 1 -7,-2.2 2,-0.6 -2,-1.1 -7,-0.5 -0.218 6.0-137.3 -60.2 150.6 -6.5 -8.1 4.9 90 536 A V E -B 21 0A 51 -69,-2.2 -69,-2.8 -9,-0.1 2,-0.5 -0.916 13.5-160.3-118.2 106.7 -6.6 -7.6 1.1 91 537 A L E +B 20 0A 2 -2,-0.6 2,-0.3 -71,-0.2 -71,-0.2 -0.733 21.2 162.5 -88.4 126.7 -3.3 -6.5 -0.5 92 538 A E E -B 19 0A 99 -73,-1.6 -73,-2.3 -2,-0.5 2,-0.8 -0.996 43.2-108.0-144.7 147.6 -3.6 -4.8 -3.9 93 539 A W E -B 18 0A 81 -2,-0.3 -75,-0.2 -75,-0.2 -77,-0.0 -0.653 45.0-113.5 -78.8 110.6 -1.4 -2.6 -6.1 94 540 A A - 0 0 13 -77,-1.1 2,-0.4 -2,-0.8 -77,-0.1 -0.120 31.7-121.5 -43.8 128.6 -2.9 0.9 -6.1 95 541 A D - 0 0 124 -3,-0.0 2,-0.2 1,-0.0 -1,-0.1 -0.643 28.0-155.6 -80.9 127.5 -4.2 1.7 -9.5 96 542 A S - 0 0 74 -2,-0.4 2,-0.4 -81,-0.0 -81,-0.0 -0.679 14.7-116.3-102.4 157.3 -2.6 4.8 -11.1 97 543 A E - 0 0 151 -2,-0.2 2,-0.7 1,-0.0 -1,-0.0 -0.750 26.7-117.7 -95.2 138.0 -4.0 7.1 -13.8 98 544 A V + 0 0 111 -2,-0.4 2,-0.5 2,-0.0 -91,-0.0 -0.627 37.7 177.8 -76.9 114.2 -2.3 7.4 -17.2 99 545 A T - 0 0 123 -2,-0.7 2,-0.6 0, 0.0 -2,-0.0 -0.966 17.5-151.4-124.0 118.6 -1.1 11.0 -17.7 100 546 A V - 0 0 121 -2,-0.5 2,-0.1 1,-0.0 -2,-0.0 -0.772 15.7-142.2 -91.1 122.7 0.8 12.0 -20.8 101 547 A Q - 0 0 141 -2,-0.6 -1,-0.0 1,-0.1 0, 0.0 -0.400 8.4-159.6 -80.1 158.8 3.2 14.9 -20.3 102 548 A S + 0 0 128 -2,-0.1 -1,-0.1 2,-0.1 -2,-0.0 0.851 69.5 58.5-101.4 -64.7 3.8 17.7 -22.9 103 549 A G S S- 0 0 41 1,-0.1 -1,-0.1 3,-0.0 -2,-0.0 -0.394 84.8-116.4 -71.7 146.3 7.1 19.4 -22.2 104 550 A P - 0 0 125 0, 0.0 2,-0.8 0, 0.0 -1,-0.1 0.031 31.4 -94.9 -69.8-177.2 10.3 17.3 -22.2 105 551 A S - 0 0 93 0, 0.0 2,-1.5 0, 0.0 -2,-0.0 -0.784 33.4-162.1-107.9 89.0 12.6 16.7 -19.2 106 552 A S 0 0 135 -2,-0.8 -3,-0.0 1,-0.0 0, 0.0 -0.531 360.0 360.0 -72.5 90.6 15.4 19.2 -19.4 107 553 A G 0 0 118 -2,-1.5 -1,-0.0 0, 0.0 0, 0.0 0.182 360.0 360.0 128.1 360.0 17.9 17.6 -17.1