==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 19-MAY-05 2CPI . COMPND 2 MOLECULE: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 111 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8637.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 63.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 20.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 21 18.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 94 A G 0 0 131 0, 0.0 2,-1.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-160.4 20.4 11.9 12.7 2 95 A S - 0 0 127 1,-0.0 2,-1.4 2,-0.0 0, 0.0 -0.761 360.0-146.6 -92.5 99.3 19.6 13.4 9.3 3 96 A S S S+ 0 0 134 -2,-1.0 -1,-0.0 1,-0.2 0, 0.0 -0.476 72.5 84.1 -67.3 92.5 15.9 12.8 8.6 4 97 A G + 0 0 51 -2,-1.4 -1,-0.2 0, 0.0 3,-0.1 0.163 36.3 158.1 174.8 46.3 16.0 12.3 4.8 5 98 A S S S+ 0 0 130 1,-0.2 2,-1.4 2,-0.1 -2,-0.1 0.931 77.7 52.0 -45.5 -58.4 16.9 8.8 3.8 6 99 A S S S+ 0 0 116 1,-0.2 -1,-0.2 3,-0.0 3,-0.1 -0.657 73.1 132.8 -86.1 88.9 15.3 9.2 0.4 7 100 A G + 0 0 60 -2,-1.4 2,-0.4 1,-0.3 -1,-0.2 0.847 55.3 47.3 -99.1 -78.4 17.0 12.4 -0.9 8 101 A A S S+ 0 0 110 0, 0.0 2,-0.3 0, 0.0 -1,-0.3 -0.560 80.6 112.8 -72.5 121.2 18.3 12.2 -4.4 9 102 A S - 0 0 81 -2,-0.4 2,-0.2 -3,-0.1 94,-0.0 -0.976 64.5 -77.5-174.1 171.6 15.6 10.7 -6.7 10 103 A V - 0 0 72 -2,-0.3 2,-0.8 1,-0.1 94,-0.1 -0.548 45.0-111.1 -85.4 150.5 13.3 11.2 -9.6 11 104 A R + 0 0 243 -2,-0.2 2,-0.5 2,-0.0 -1,-0.1 -0.721 42.1 174.3 -85.2 109.6 9.9 13.1 -9.2 12 105 A V - 0 0 69 -2,-0.8 2,-0.9 86,-0.1 -2,-0.0 -0.967 23.2-147.4-121.7 122.3 7.1 10.6 -9.7 13 106 A V + 0 0 111 -2,-0.5 2,-0.7 1,-0.0 3,-0.2 -0.768 20.5 175.4 -90.7 106.7 3.5 11.5 -9.2 14 107 A Q + 0 0 77 -2,-0.9 84,-0.9 1,-0.2 3,-0.4 -0.794 19.7 144.6-114.7 88.6 1.6 8.4 -7.9 15 108 A K S S+ 0 0 134 -2,-0.7 2,-0.9 1,-0.2 -1,-0.2 0.852 70.9 56.9 -88.8 -41.1 -2.0 9.4 -7.1 16 109 A N S S+ 0 0 55 -3,-0.2 2,-0.4 60,-0.1 54,-0.3 -0.204 89.4 100.8 -85.3 44.9 -3.7 6.2 -8.1 17 110 A L - 0 0 14 -2,-0.9 2,-0.8 -3,-0.4 81,-0.2 -0.961 59.9-152.8-136.1 117.5 -1.5 4.2 -5.7 18 111 A V E -A 68 0A 3 50,-2.2 50,-1.7 -2,-0.4 2,-0.7 -0.792 14.1-174.2 -92.6 110.7 -2.7 3.0 -2.3 19 112 A F E +AB 67 96A 33 77,-2.4 77,-1.9 -2,-0.8 2,-0.4 -0.893 5.9 179.6-109.5 107.0 0.3 2.6 0.1 20 113 A V E -AB 66 95A 1 46,-2.2 46,-1.8 -2,-0.7 2,-0.2 -0.851 2.7-173.0-108.7 142.6 -0.6 1.1 3.5 21 114 A V E +AB 65 94A 49 73,-1.7 73,-1.0 -2,-0.4 44,-0.2 -0.771 54.3 53.6-126.4 171.7 1.8 0.4 6.4 22 115 A G E + 0 0 27 42,-0.6 2,-0.5 -2,-0.2 -1,-0.2 0.940 66.9 156.2 69.5 48.4 1.7 -1.3 9.7 23 116 A L E -A 64 0A 11 41,-1.2 41,-0.8 -3,-0.2 -1,-0.2 -0.933 39.3-129.7-112.7 125.5 0.3 -4.6 8.5 24 117 A S >> - 0 0 49 -2,-0.5 4,-2.9 1,-0.1 3,-1.1 -0.446 29.1-109.7 -71.8 141.4 0.9 -7.9 10.4 25 118 A Q T 34 S+ 0 0 105 1,-0.3 -1,-0.1 2,-0.2 38,-0.0 0.782 123.5 54.3 -38.4 -32.3 2.3 -10.8 8.5 26 119 A R T 34 S+ 0 0 216 1,-0.2 -1,-0.3 3,-0.0 -3,-0.0 0.932 110.8 41.3 -70.8 -47.5 -1.2 -12.2 9.0 27 120 A L T <4 S+ 0 0 21 -3,-1.1 2,-2.0 1,-0.1 -2,-0.2 0.831 92.4 93.7 -69.5 -32.7 -3.0 -9.3 7.5 28 121 A A < + 0 0 7 -4,-2.9 -1,-0.1 4,-0.1 22,-0.1 -0.410 61.5 123.7 -64.5 83.8 -0.4 -9.0 4.8 29 122 A D > - 0 0 64 -2,-2.0 4,-2.0 1,-0.1 5,-0.2 -0.998 60.5-142.0-148.7 144.1 -2.3 -11.1 2.2 30 123 A P H > S+ 0 0 51 0, 0.0 4,-2.1 0, 0.0 -1,-0.1 0.916 106.9 40.4 -69.8 -45.6 -3.7 -10.7 -1.3 31 124 A E H > S+ 0 0 159 2,-0.2 4,-1.8 1,-0.2 -2,-0.0 0.881 115.7 51.7 -71.5 -39.5 -6.9 -12.6 -0.8 32 125 A V H 4 S+ 0 0 34 2,-0.2 7,-0.2 1,-0.2 5,-0.2 0.922 117.3 37.9 -63.2 -45.8 -7.5 -11.1 2.7 33 126 A L H < S+ 0 0 2 -4,-2.0 6,-1.5 1,-0.2 7,-1.1 0.844 113.1 57.5 -74.5 -34.9 -7.0 -7.5 1.4 34 127 A K H < S+ 0 0 112 -4,-2.1 -2,-0.2 -5,-0.2 -1,-0.2 0.829 83.6 108.8 -64.6 -32.2 -8.8 -8.3 -1.9 35 128 A R S >X>S- 0 0 162 -4,-1.8 3,-1.5 1,-0.2 5,-1.5 -0.063 81.1-123.3 -46.3 144.0 -11.9 -9.4 0.1 36 129 A P T 345S+ 0 0 88 0, 0.0 -1,-0.2 0, 0.0 -3,-0.1 0.519 112.0 58.7 -69.8 -4.2 -14.8 -6.9 -0.1 37 130 A E T 345S+ 0 0 169 -5,-0.2 -2,-0.1 3,-0.1 -4,-0.1 0.527 112.7 36.2-100.7 -10.6 -14.7 -6.8 3.7 38 131 A Y T <45S- 0 0 102 -3,-1.5 -5,-0.1 -5,-0.2 -4,-0.1 0.815 140.1 -31.9-103.2 -75.0 -11.1 -5.5 3.9 39 132 A F T >X5S+ 0 0 13 -6,-1.5 3,-2.5 -4,-1.2 4,-0.6 0.676 122.7 76.0-118.6 -40.6 -10.3 -3.1 1.0 40 133 A G T 34 S- 0 0 161 -28,-0.3 4,-2.1 1,-0.2 -1,-0.2 -0.900 72.2-157.9-107.1 114.7 -10.9 4.3 -10.5 73 166 A S H > S+ 0 0 54 -2,-0.6 4,-2.7 1,-0.2 5,-0.2 0.945 93.4 56.5 -51.7 -55.2 -8.6 7.0 -9.0 74 167 A E H > S+ 0 0 104 1,-0.3 4,-2.1 2,-0.2 5,-0.3 0.906 107.5 48.7 -43.0 -54.0 -11.5 8.8 -7.3 75 168 A D H > S+ 0 0 62 2,-0.2 4,-2.5 1,-0.2 -1,-0.3 0.912 114.7 46.3 -54.7 -46.1 -12.4 5.6 -5.5 76 169 A A H X S+ 0 0 0 -4,-2.1 4,-1.8 2,-0.2 5,-0.3 0.990 109.9 50.8 -60.8 -64.1 -8.8 5.1 -4.4 77 170 A L H >X S+ 0 0 37 -4,-2.7 4,-1.7 1,-0.2 3,-1.2 0.905 116.4 41.3 -38.3 -63.6 -8.1 8.7 -3.3 78 171 A R H >X S+ 0 0 146 -4,-2.1 4,-2.0 1,-0.3 3,-0.5 0.935 107.2 61.9 -52.8 -51.8 -11.2 8.7 -1.1 79 172 A A H 3X S+ 0 0 3 -4,-2.5 4,-1.5 -5,-0.3 -1,-0.3 0.804 108.8 44.9 -45.1 -32.9 -10.6 5.2 0.1 80 173 A I H < S+ 0 0 19 -4,-1.5 3,-0.9 -5,-0.4 -2,-0.2 0.840 87.5 93.7 -63.3 -33.7 -8.6 4.7 5.7 84 177 A N T 3< S+ 0 0 79 -4,-1.9 10,-0.1 1,-0.3 3,-0.1 -0.324 92.8 15.4 -62.5 141.0 -6.4 7.2 7.5 85 178 A N T 3 S+ 0 0 134 8,-0.6 2,-0.4 1,-0.2 -1,-0.3 0.869 97.0 139.2 62.3 37.6 -6.8 7.4 11.3 86 179 A V E < -D 93 0B 54 -3,-0.9 7,-1.5 7,-0.8 2,-0.5 -0.951 49.4-135.7-118.6 133.2 -8.7 4.1 11.2 87 180 A V E +D 92 0B 100 -2,-0.4 2,-0.4 5,-0.2 5,-0.3 -0.733 24.9 177.3 -89.0 128.0 -8.3 1.3 13.8 88 181 A V E > -D 91 0B 47 3,-2.4 3,-1.8 -2,-0.5 -2,-0.0 -0.948 69.8 -18.1-135.9 114.6 -8.1 -2.2 12.5 89 182 A D T 3 S- 0 0 124 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.797 126.8 -55.4 63.5 28.5 -7.6 -5.3 14.7 90 183 A G T 3 S+ 0 0 66 1,-0.2 2,-0.5 0, 0.0 -1,-0.3 0.237 123.8 102.2 89.2 -14.4 -6.4 -3.0 17.4 91 184 A R E < S-D 88 0B 145 -3,-1.8 -3,-2.4 -69,-0.0 2,-0.9 -0.908 73.1-130.7-108.8 126.0 -3.7 -1.5 15.1 92 185 A T E -D 87 0B 85 -2,-0.5 -5,-0.2 -5,-0.3 -7,-0.1 -0.624 27.1-146.4 -76.7 106.5 -4.3 1.9 13.5 93 186 A L E -D 86 0B 11 -7,-1.5 -7,-0.8 -2,-0.9 -8,-0.6 -0.290 5.9-149.6 -70.2 157.0 -3.6 1.5 9.8 94 187 A K E -B 21 0A 104 -73,-1.0 -73,-1.7 -10,-0.1 2,-0.4 -0.951 12.3-173.9-135.6 115.0 -2.0 4.3 7.7 95 188 A A E +B 20 0A 4 -2,-0.4 2,-0.3 -15,-0.3 -75,-0.2 -0.860 13.4 155.9-110.1 143.0 -2.7 4.8 4.0 96 189 A S E -B 19 0A 39 -77,-1.9 -77,-2.4 -2,-0.4 2,-0.3 -0.975 27.3-133.7-156.7 165.4 -1.0 7.4 1.8 97 190 A L S S+ 0 0 76 -2,-0.3 -82,-0.2 -79,-0.2 -79,-0.1 -0.905 70.7 61.4-126.6 155.0 -0.1 8.1 -1.9 98 191 A G + 0 0 45 -84,-0.9 2,-0.3 -2,-0.3 -1,-0.1 0.697 66.7 140.6 103.7 26.2 3.0 9.3 -3.6 99 192 A T - 0 0 36 -85,-0.3 -1,-0.3 -3,-0.2 2,-0.3 -0.738 44.5-129.4-102.6 150.7 5.4 6.4 -2.8 100 193 A T - 0 0 69 -2,-0.3 3,-0.1 1,-0.1 -1,-0.0 -0.664 14.6-170.6 -97.7 153.4 7.9 4.8 -5.0 101 194 A K + 0 0 100 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 0.825 69.3 25.9-104.6 -59.0 8.4 1.1 -5.7 102 195 A Y S S- 0 0 193 4,-0.0 2,-0.6 3,-0.0 -1,-0.2 -0.521 82.3-106.4-103.5 172.7 11.6 0.7 -7.6 103 196 A C - 0 0 80 -2,-0.2 3,-0.2 1,-0.2 -94,-0.0 -0.895 14.7-149.0-105.7 120.0 14.8 2.8 -7.8 104 197 A S S S+ 0 0 41 -2,-0.6 -1,-0.2 1,-0.2 -95,-0.1 0.930 98.0 57.2 -47.7 -55.1 15.4 4.8 -11.0 105 198 A Y S > S+ 0 0 162 3,-0.1 4,-0.6 -3,-0.1 -1,-0.2 0.909 83.0 99.1 -42.5 -55.6 19.1 4.5 -10.6 106 199 A S T 4 S+ 0 0 85 1,-0.2 -4,-0.0 2,-0.2 0, 0.0 -0.058 74.3 45.8 -38.6 122.4 18.9 0.7 -10.6 107 200 A G T 4 S- 0 0 68 2,-0.0 -1,-0.2 3,-0.0 2,-0.2 -0.211 126.1 -90.0 172.0 -69.3 19.7 -0.4 -14.2 108 201 A P T 4 S+ 0 0 108 0, 0.0 2,-0.3 0, 0.0 -2,-0.2 0.598 76.1 170.3 -69.7 179.1 21.9 1.3 -14.3 109 202 A S < - 0 0 59 -4,-0.6 -2,-0.0 -2,-0.2 0, 0.0 -0.937 59.4 -17.3-160.3 133.8 20.1 4.3 -15.7 110 203 A S 0 0 118 -2,-0.3 -5,-0.1 1,-0.1 -6,-0.0 0.822 360.0 360.0 37.2 40.2 20.9 8.0 -16.2 111 204 A G 0 0 99 -6,-0.1 -1,-0.1 0, 0.0 -5,-0.0 0.638 360.0 360.0-121.3 360.0 23.8 7.4 -13.8