==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 19-MAY-05 2CPT . COMPND 2 MOLECULE: VACUOLAR SORTING PROTEIN 4B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.SUETAKE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 117 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 10294.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 77 65.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 61 52.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 133 0, 0.0 2,-0.7 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 94.5 -19.3 36.0 27.3 2 2 A S - 0 0 129 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.500 360.0-118.7 -66.9 106.5 -19.7 33.9 24.2 3 3 A S - 0 0 97 -2,-0.7 2,-1.9 1,-0.2 -1,-0.1 -0.183 16.5-132.7 -47.8 126.9 -16.8 31.5 24.3 4 4 A G - 0 0 65 2,-0.1 2,-0.3 1,-0.0 -1,-0.2 -0.381 23.0-160.6 -83.5 60.8 -14.6 32.1 21.2 5 5 A S + 0 0 114 -2,-1.9 2,-0.2 2,-0.0 -1,-0.0 -0.189 43.5 119.0 -45.7 99.8 -14.3 28.4 20.3 6 6 A S + 0 0 113 -2,-0.3 3,-0.1 3,-0.0 -2,-0.1 -0.761 17.1 98.3-172.1 120.7 -11.2 28.6 18.1 7 7 A G + 0 0 71 1,-0.3 2,-0.3 -2,-0.2 3,-0.1 0.123 51.1 89.7-164.7 -66.2 -7.7 27.1 18.4 8 8 A M S S- 0 0 187 1,-0.1 -1,-0.3 3,-0.0 3,-0.1 -0.341 81.5-117.9 -55.7 114.0 -7.0 23.9 16.3 9 9 A S - 0 0 108 -2,-0.3 2,-0.6 1,-0.2 -1,-0.1 -0.288 34.5 -97.9 -56.9 133.4 -5.7 25.2 13.0 10 10 A S - 0 0 131 -3,-0.1 -1,-0.2 1,-0.1 2,-0.1 -0.369 47.2-150.4 -57.7 104.6 -8.0 24.1 10.1 11 11 A T - 0 0 68 -2,-0.6 -1,-0.1 1,-0.1 -3,-0.0 -0.355 17.4-101.4 -76.8 158.9 -6.2 21.1 8.8 12 12 A S > - 0 0 39 43,-0.1 4,-2.1 1,-0.1 5,-0.1 -0.350 21.3-122.2 -78.4 160.6 -6.3 20.0 5.1 13 13 A P H > S+ 0 0 99 0, 0.0 4,-1.9 0, 0.0 5,-0.1 0.864 110.8 52.5 -69.8 -37.9 -8.6 17.2 3.8 14 14 A N H > S+ 0 0 41 2,-0.2 4,-1.6 1,-0.2 37,-0.1 0.925 111.9 45.3 -64.9 -46.0 -5.6 15.2 2.4 15 15 A L H > S+ 0 0 19 2,-0.2 4,-2.0 1,-0.2 3,-0.3 0.954 109.7 53.9 -62.8 -52.0 -3.7 15.3 5.6 16 16 A Q H X S+ 0 0 101 -4,-2.1 4,-2.2 1,-0.3 5,-0.2 0.899 107.6 51.9 -49.2 -46.5 -6.7 14.4 7.8 17 17 A K H X S+ 0 0 106 -4,-1.9 4,-2.8 1,-0.2 -1,-0.3 0.893 105.5 55.5 -58.8 -41.5 -7.3 11.3 5.6 18 18 A A H X S+ 0 0 0 -4,-1.6 4,-2.4 -3,-0.3 -1,-0.2 0.910 108.4 48.1 -58.3 -44.7 -3.7 10.3 6.1 19 19 A I H X S+ 0 0 80 -4,-2.0 4,-2.7 2,-0.2 -2,-0.2 0.972 113.3 45.1 -60.9 -57.4 -4.0 10.3 9.9 20 20 A D H X S+ 0 0 105 -4,-2.2 4,-3.0 1,-0.2 5,-0.2 0.920 112.8 52.8 -52.8 -48.7 -7.2 8.3 10.0 21 21 A L H X S+ 0 0 21 -4,-2.8 4,-2.4 1,-0.2 -1,-0.2 0.954 110.5 45.8 -52.7 -56.8 -5.9 5.8 7.5 22 22 A A H X S+ 0 0 4 -4,-2.4 4,-1.6 1,-0.2 -1,-0.2 0.911 113.2 50.9 -53.7 -46.6 -2.7 5.2 9.5 23 23 A S H X S+ 0 0 66 -4,-2.7 4,-2.0 1,-0.2 -1,-0.2 0.926 109.0 50.7 -58.4 -47.4 -4.7 4.8 12.7 24 24 A K H X S+ 0 0 116 -4,-3.0 4,-2.3 1,-0.2 -1,-0.2 0.914 103.1 60.9 -57.5 -45.2 -7.1 2.3 11.1 25 25 A A H X S+ 0 0 0 -4,-2.4 4,-2.3 1,-0.2 -1,-0.2 0.933 107.0 44.1 -47.0 -57.1 -4.2 0.2 9.8 26 26 A A H X S+ 0 0 45 -4,-1.6 4,-2.2 1,-0.2 5,-0.3 0.951 108.4 57.2 -54.5 -55.1 -3.0 -0.4 13.4 27 27 A Q H X S+ 0 0 128 -4,-2.0 4,-1.9 1,-0.2 -1,-0.2 0.874 110.0 46.7 -43.8 -45.5 -6.5 -1.1 14.7 28 28 A E H X>S+ 0 0 47 -4,-2.3 5,-2.8 -3,-0.2 4,-2.0 0.967 107.9 54.6 -63.4 -55.2 -6.8 -3.9 12.1 29 29 A D H ><5S+ 0 0 21 -4,-2.3 3,-1.1 1,-0.2 -2,-0.2 0.928 110.9 44.9 -42.8 -62.1 -3.4 -5.4 12.8 30 30 A K H 3<5S+ 0 0 187 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.907 111.3 53.9 -50.8 -46.9 -4.1 -5.8 16.5 31 31 A A H 3<5S- 0 0 81 -4,-1.9 -1,-0.3 -5,-0.3 -2,-0.2 0.791 129.4 -99.0 -59.7 -28.2 -7.5 -7.2 15.7 32 32 A G T <<5S+ 0 0 50 -4,-2.0 2,-0.8 -3,-1.1 -3,-0.2 0.457 83.4 128.9 120.1 7.5 -5.8 -9.7 13.5 33 33 A N >< + 0 0 78 -5,-2.8 4,-0.6 1,-0.2 -1,-0.2 -0.832 14.2 153.2 -99.4 105.1 -6.3 -8.1 10.1 34 34 A Y H > S+ 0 0 69 -2,-0.8 4,-3.0 2,-0.2 5,-0.2 0.861 71.5 54.5 -94.7 -47.4 -3.0 -7.8 8.2 35 35 A E H > S+ 0 0 107 1,-0.2 4,-1.3 2,-0.2 -2,-0.1 0.873 117.0 40.1 -54.8 -39.4 -4.1 -7.8 4.6 36 36 A E H > S+ 0 0 97 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.892 113.5 52.9 -77.3 -42.1 -6.4 -4.9 5.4 37 37 A A H X S+ 0 0 0 -4,-0.6 4,-2.9 2,-0.2 -2,-0.2 0.872 105.4 57.4 -60.9 -38.4 -3.9 -3.1 7.7 38 38 A L H X S+ 0 0 23 -4,-3.0 4,-1.9 2,-0.2 -1,-0.2 0.981 105.4 46.9 -56.4 -63.3 -1.2 -3.3 4.9 39 39 A Q H >X S+ 0 0 92 -4,-1.3 4,-2.5 1,-0.2 3,-0.6 0.919 115.2 47.1 -44.4 -56.2 -3.2 -1.4 2.3 40 40 A L H 3X S+ 0 0 26 -4,-1.8 4,-2.8 1,-0.3 5,-0.3 0.935 106.7 56.9 -53.0 -51.7 -4.2 1.3 4.8 41 41 A Y H 3X S+ 0 0 7 -4,-2.9 4,-1.0 1,-0.2 -1,-0.3 0.841 110.8 46.1 -49.5 -36.3 -0.6 1.6 6.0 42 42 A Q H S+ 0 0 92 -4,-1.9 4,-1.9 -5,-0.3 5,-0.9 0.855 109.2 49.3 -40.1 -44.8 1.1 14.7 -1.3 51 51 A V H <5S+ 0 0 0 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.969 111.2 45.4 -61.8 -56.4 0.5 17.2 1.5 52 52 A V H <5S+ 0 0 19 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.642 109.9 62.6 -63.0 -12.9 4.2 17.7 2.3 53 53 A K H <5S- 0 0 128 -4,-1.9 -2,-0.2 -5,-0.2 -1,-0.2 0.962 136.5 -23.9 -76.8 -56.5 4.6 18.0 -1.5 54 54 A Y T <5S+ 0 0 174 -4,-1.9 2,-0.5 -5,-0.2 -3,-0.2 0.653 138.9 55.0-123.6 -48.1 2.4 21.1 -2.2 55 55 A E S > - 0 0 26 1,-0.1 4,-2.9 0, 0.0 3,-0.9 -0.970 54.7 -94.3-168.9 153.8 6.4 24.0 7.7 59 59 A D H 3> S+ 0 0 109 -2,-0.3 4,-1.5 1,-0.3 5,-0.2 0.820 127.9 51.3 -38.9 -38.5 9.8 22.5 8.1 60 60 A K H 3> S+ 0 0 176 2,-0.2 4,-1.6 1,-0.1 -1,-0.3 0.913 114.9 40.3 -68.1 -44.0 8.6 21.5 11.6 61 61 A A H <> S+ 0 0 25 -3,-0.9 4,-2.6 2,-0.2 5,-0.3 0.954 107.9 61.0 -69.7 -52.0 5.5 19.8 10.2 62 62 A K H X S+ 0 0 54 -4,-2.9 4,-3.3 1,-0.2 3,-0.2 0.902 109.8 41.9 -39.4 -59.5 7.1 18.2 7.2 63 63 A Q H X S+ 0 0 104 -4,-1.5 4,-3.3 -5,-0.3 5,-0.3 0.940 109.2 58.6 -56.0 -51.3 9.4 16.2 9.3 64 64 A S H X S+ 0 0 78 -4,-1.6 4,-0.8 1,-0.2 -1,-0.2 0.881 115.2 37.1 -45.9 -45.1 6.7 15.3 11.8 65 65 A I H >X S+ 0 0 15 -4,-2.6 4,-1.9 -3,-0.2 3,-1.0 0.946 113.3 55.2 -74.1 -51.1 4.7 13.8 9.0 66 66 A R H 3X S+ 0 0 115 -4,-3.3 4,-2.2 -5,-0.3 5,-0.3 0.911 101.5 59.4 -47.8 -50.0 7.7 12.2 7.1 67 67 A A H 3X S+ 0 0 60 -4,-3.3 4,-1.9 1,-0.3 -1,-0.3 0.866 106.7 48.1 -47.9 -41.2 8.8 10.4 10.3 68 68 A K H X S+ 0 0 96 -4,-2.5 4,-1.5 1,-0.2 3,-0.9 0.938 109.8 48.3 -53.4 -52.1 5.8 -1.8 9.4 76 76 A A H 3X S+ 0 0 3 -4,-2.5 4,-1.8 1,-0.3 5,-0.2 0.936 99.3 66.4 -54.8 -51.2 3.9 -2.7 6.3 77 77 A E H 3X S+ 0 0 108 -4,-2.1 4,-1.2 1,-0.2 -1,-0.3 0.828 104.3 48.1 -39.3 -39.7 6.9 -4.1 4.6 78 78 A K H XX S+ 0 0 129 -4,-1.1 4,-1.8 -3,-0.9 3,-1.0 0.976 102.1 58.3 -68.1 -57.3 6.7 -6.8 7.3 79 79 A L H 3X S+ 0 0 5 -4,-1.5 4,-2.8 1,-0.3 -1,-0.2 0.792 104.9 56.6 -43.0 -31.4 3.0 -7.6 7.0 80 80 A K H 3X S+ 0 0 68 -4,-1.8 4,-2.2 2,-0.2 -1,-0.3 0.927 103.4 49.9 -68.7 -46.3 4.0 -8.4 3.4 81 81 A E H