==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 19-MAY-05 2CPY . COMPND 2 MOLECULE: RNA-BINDING PROTEIN 12; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 114 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8380.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 57.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 16.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 12.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 529 A G 0 0 113 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 95.2 3.9 18.4 -15.5 2 530 A S - 0 0 115 1,-0.1 4,-0.2 3,-0.0 0, 0.0 0.847 360.0-158.3 -37.3 -46.2 4.7 21.6 -13.6 3 531 A S - 0 0 113 2,-0.1 -1,-0.1 3,-0.0 0, 0.0 0.889 65.8 -29.3 64.2 40.3 1.1 21.6 -12.5 4 532 A G S S- 0 0 48 1,-0.1 2,-0.8 2,-0.0 3,-0.3 0.552 80.2 -91.8 88.8 122.9 1.2 25.3 -11.7 5 533 A S + 0 0 131 1,-0.2 -2,-0.1 2,-0.0 -1,-0.1 -0.535 67.7 137.1 -69.5 105.4 4.3 27.3 -10.6 6 534 A S - 0 0 123 -2,-0.8 -1,-0.2 -4,-0.2 -3,-0.0 0.726 63.5 -91.5-115.5 -49.2 4.1 27.2 -6.8 7 535 A G - 0 0 69 -3,-0.3 -2,-0.0 2,-0.0 0, 0.0 0.087 29.1-118.6 130.8 116.7 7.7 26.5 -5.6 8 536 A E + 0 0 205 -2,-0.0 2,-0.3 3,-0.0 3,-0.0 -0.064 53.0 109.8 -68.4 175.2 9.6 23.3 -4.8 9 537 A G + 0 0 66 3,-0.0 3,-0.4 0, 0.0 -2,-0.0 -0.964 58.2 18.0 150.6-166.1 11.0 22.5 -1.4 10 538 A D S S- 0 0 159 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 0.047 101.4 -73.9 -34.4 136.0 10.6 20.2 1.6 11 539 A V + 0 0 102 1,-0.1 2,-0.5 2,-0.1 -1,-0.2 -0.113 67.2 175.1 -40.3 103.9 8.5 17.2 0.7 12 540 A N - 0 0 135 -3,-0.4 -1,-0.1 1,-0.1 -3,-0.0 -0.943 65.4 -19.9-124.9 111.0 5.0 18.7 0.5 13 541 A S S S+ 0 0 96 -2,-0.5 2,-0.3 1,-0.2 -1,-0.1 0.892 91.4 163.5 62.0 41.0 2.1 16.6 -0.6 14 542 A A - 0 0 22 1,-0.0 2,-1.3 2,-0.0 79,-1.0 -0.711 46.0-115.4 -94.2 142.7 4.5 14.1 -2.2 15 543 A K + 0 0 86 -2,-0.3 77,-0.2 77,-0.2 55,-0.2 -0.623 58.9 139.5 -78.9 95.4 3.4 10.6 -3.2 16 544 A V + 0 0 10 -2,-1.3 48,-2.0 75,-0.4 2,-0.3 -0.123 51.0 70.9-128.6 35.6 5.4 8.4 -1.0 17 545 A C E -AB 63 91A 0 74,-0.8 74,-2.1 46,-0.2 2,-0.4 -0.995 54.0-161.1-151.5 150.6 2.9 5.7 -0.0 18 546 A A E -AB 62 90A 2 44,-2.0 44,-2.5 -2,-0.3 2,-0.5 -0.969 10.3-149.5-139.8 121.7 1.0 2.8 -1.6 19 547 A H E -AB 61 89A 19 70,-2.9 70,-2.3 -2,-0.4 2,-0.6 -0.789 11.2-154.7 -93.3 124.8 -2.2 1.2 -0.4 20 548 A I E +AB 60 88A 5 40,-3.1 40,-1.7 -2,-0.5 2,-0.2 -0.877 24.0 161.9-103.2 118.5 -2.5 -2.5 -1.2 21 549 A T E + B 0 87A 7 66,-2.4 66,-1.9 -2,-0.6 38,-0.1 -0.709 44.8 53.8-125.7 177.2 -6.1 -3.9 -1.3 22 550 A N S S+ 0 0 45 87,-0.4 -1,-0.2 36,-0.3 37,-0.1 0.895 79.8 135.0 63.7 41.3 -8.0 -6.9 -2.7 23 551 A I - 0 0 19 35,-1.3 2,-0.4 34,-0.2 -1,-0.2 -0.877 61.9-100.4-122.4 154.4 -5.6 -9.3 -0.9 24 552 A P > - 0 0 18 0, 0.0 3,-1.6 0, 0.0 34,-0.1 -0.572 17.8-145.8 -75.3 126.1 -6.2 -12.5 1.1 25 553 A F T 3 S+ 0 0 104 -2,-0.4 33,-0.1 1,-0.3 34,-0.1 0.542 89.8 85.8 -67.3 -5.0 -6.1 -11.9 4.9 26 554 A S T 3 S+ 0 0 80 2,-0.0 -1,-0.3 32,-0.0 2,-0.1 0.826 82.3 67.2 -65.3 -32.0 -4.6 -15.4 5.0 27 555 A I S < S- 0 0 15 -3,-1.6 2,-0.3 3,-0.0 31,-0.1 -0.403 73.9-146.8 -86.7 165.9 -1.1 -13.9 4.4 28 556 A T >> - 0 0 80 -2,-0.1 4,-2.1 1,-0.0 3,-0.7 -0.803 38.4 -83.4-128.5 170.3 0.8 -11.7 6.8 29 557 A K H 3> S+ 0 0 63 1,-0.3 4,-2.5 -2,-0.3 5,-0.2 0.859 126.3 60.0 -37.5 -48.9 3.3 -8.8 6.6 30 558 A M H 3> S+ 0 0 126 1,-0.2 4,-0.8 2,-0.2 -1,-0.3 0.936 107.7 42.9 -46.8 -57.9 6.0 -11.3 6.1 31 559 A D H X> S+ 0 0 86 -3,-0.7 3,-2.1 1,-0.2 4,-1.3 0.936 110.1 56.7 -55.7 -50.5 4.4 -12.7 2.9 32 560 A V H 3X S+ 0 0 5 -4,-2.1 4,-1.4 1,-0.3 3,-0.4 0.879 99.2 60.5 -49.1 -42.8 3.6 -9.2 1.6 33 561 A L H 3< S+ 0 0 43 -4,-2.5 -1,-0.3 -5,-0.3 -2,-0.2 0.788 102.4 53.9 -57.1 -27.6 7.3 -8.4 1.9 34 562 A Q H X< S+ 0 0 128 -3,-2.1 3,-1.6 -4,-0.8 -1,-0.3 0.862 100.9 57.4 -75.3 -37.4 7.9 -11.2 -0.6 35 563 A F H 3< S+ 0 0 38 -4,-1.3 -2,-0.2 -3,-0.4 -1,-0.2 0.823 105.0 52.6 -62.5 -31.6 5.4 -9.7 -3.1 36 564 A L T >< S+ 0 0 10 -4,-1.4 3,-1.8 2,-0.1 -1,-0.3 0.036 80.4 155.4 -92.9 26.1 7.4 -6.5 -3.2 37 565 A E T < + 0 0 149 -3,-1.6 -3,-0.1 1,-0.2 -4,-0.0 -0.345 60.1 34.4 -57.6 123.3 10.6 -8.5 -3.9 38 566 A G T 3 S+ 0 0 69 1,-0.4 -1,-0.2 -2,-0.1 -2,-0.1 -0.092 91.9 99.8 123.1 -35.0 13.1 -6.1 -5.6 39 567 A I S < S- 0 0 21 -3,-1.8 2,-1.5 1,-0.1 -1,-0.4 -0.699 75.2-123.9 -89.6 135.3 12.3 -2.8 -3.9 40 568 A P + 0 0 93 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.588 57.6 138.3 -79.3 87.2 14.5 -1.6 -1.0 41 569 A V - 0 0 42 -2,-1.5 2,-0.1 -5,-0.1 23,-0.1 -0.956 47.6-121.6-133.1 151.7 12.0 -1.2 1.8 42 570 A D - 0 0 97 -2,-0.3 4,-0.4 21,-0.2 3,-0.4 -0.456 23.8-118.4 -87.9 162.6 12.0 -2.0 5.5 43 571 A E S > S+ 0 0 97 1,-0.2 3,-1.6 2,-0.2 -1,-0.1 0.902 115.4 55.6 -65.9 -42.3 9.5 -4.2 7.3 44 572 A N T 3 S+ 0 0 120 1,-0.3 -1,-0.2 3,-0.1 19,-0.0 0.722 93.8 72.3 -63.3 -20.4 8.2 -1.3 9.5 45 573 A A T 3 S+ 0 0 13 -3,-0.4 18,-2.1 1,-0.1 2,-0.6 0.792 90.7 65.9 -65.1 -28.1 7.5 0.5 6.2 46 574 A V E < -C 62 0A 4 -3,-1.6 2,-0.8 -4,-0.4 16,-0.2 -0.869 69.2-165.1-102.0 118.1 4.6 -1.8 5.6 47 575 A H E -C 61 0A 75 14,-3.0 14,-1.9 -2,-0.6 2,-0.2 -0.861 9.3-156.7-105.8 102.8 1.7 -1.6 8.1 48 576 A V E -C 60 0A 57 -2,-0.8 12,-0.2 12,-0.2 2,-0.2 -0.560 13.5-129.8 -79.4 139.7 -0.6 -4.6 7.8 49 577 A L - 0 0 19 10,-2.2 2,-0.3 -2,-0.2 9,-0.2 -0.485 23.7-168.7 -86.8 158.7 -4.2 -4.1 9.0 50 578 A V - 0 0 99 6,-0.2 2,-0.2 -2,-0.2 5,-0.2 -0.979 7.9-148.0-146.2 156.9 -6.0 -6.5 11.4 51 579 A D > - 0 0 93 -2,-0.3 3,-0.6 5,-0.0 0, 0.0 -0.584 49.0 -75.7-117.1-179.8 -9.5 -7.2 12.7 52 580 A N T 3 S+ 0 0 150 1,-0.3 -1,-0.0 -2,-0.2 -2,-0.0 0.842 138.9 39.8 -43.6 -39.2 -11.1 -8.4 16.0 53 581 A N T 3 S- 0 0 141 1,-0.0 -1,-0.3 0, 0.0 -3,-0.0 0.756 111.3-125.8 -83.1 -26.9 -9.9 -11.9 14.9 54 582 A G S < S+ 0 0 31 -3,-0.6 -2,-0.1 0, 0.0 3,-0.1 -0.093 83.8 108.5 107.4 -34.6 -6.6 -10.6 13.6 55 583 A Q S S- 0 0 110 -5,-0.2 3,-0.2 1,-0.1 -6,-0.1 0.864 75.0-143.7 -41.5 -45.4 -6.9 -12.1 10.1 56 584 A G - 0 0 8 1,-0.1 -31,-0.2 2,-0.1 -6,-0.2 -0.007 22.3 -86.1 94.8 157.7 -7.5 -8.6 8.8 57 585 A L S S- 0 0 90 2,-0.1 -35,-0.2 -33,-0.1 -34,-0.2 0.446 73.8 -98.2 -79.4 0.4 -9.7 -7.1 6.0 58 586 A G S S+ 0 0 6 1,-0.3 -35,-1.3 -9,-0.2 -36,-0.3 0.955 83.1 116.7 82.3 57.2 -6.9 -7.9 3.6 59 587 A Q - 0 0 28 -10,-0.2 -10,-2.2 -38,-0.1 2,-0.3 -0.991 35.0-176.7-152.8 154.9 -5.1 -4.5 3.3 60 588 A A E -AC 20 48A 0 -40,-1.7 -40,-3.1 -2,-0.3 2,-0.5 -0.992 17.5-140.0-154.8 148.3 -1.8 -2.9 4.0 61 589 A L E -AC 19 47A 1 -14,-1.9 -14,-3.0 -2,-0.3 2,-0.4 -0.950 15.5-158.7-116.4 121.6 -0.1 0.5 3.7 62 590 A V E -AC 18 46A 1 -44,-2.5 -44,-2.0 -2,-0.5 2,-0.5 -0.823 1.6-159.2-101.0 135.0 3.5 0.9 2.5 63 591 A Q E -A 17 0A 81 -18,-2.1 -21,-0.2 -2,-0.4 -46,-0.2 -0.945 11.9-174.5-117.6 115.2 5.5 3.9 3.3 64 592 A F - 0 0 9 -48,-2.0 3,-0.1 -2,-0.5 -23,-0.1 -0.562 29.9-125.5-102.2 168.2 8.6 4.8 1.2 65 593 A K S S- 0 0 158 1,-0.2 2,-0.3 -2,-0.2 -1,-0.1 0.964 86.3 -2.3 -76.2 -56.5 11.2 7.4 1.5 66 594 A N S >> S- 0 0 74 1,-0.0 3,-1.9 -55,-0.0 4,-1.1 -0.840 76.4 -99.2-132.7 169.5 10.9 9.1 -1.9 67 595 A E H 3> S+ 0 0 92 1,-0.3 4,-3.0 -2,-0.3 5,-0.4 0.753 111.1 81.0 -59.7 -23.7 9.0 8.6 -5.1 68 596 A D H 34 S+ 0 0 113 1,-0.3 -1,-0.3 2,-0.2 4,-0.1 0.817 103.6 32.8 -52.1 -32.2 12.0 6.9 -6.5 69 597 A D H <> S+ 0 0 18 -3,-1.9 4,-1.6 2,-0.1 -1,-0.3 0.706 118.3 54.9 -96.2 -26.1 10.8 3.8 -4.6 70 598 A A H X S+ 0 0 2 -4,-1.1 4,-2.8 2,-0.2 3,-0.3 0.969 99.9 56.3 -71.4 -56.0 7.1 4.5 -5.0 71 599 A R H < S+ 0 0 143 -4,-3.0 -1,-0.2 1,-0.3 -3,-0.1 0.764 112.5 47.5 -47.9 -26.0 7.0 4.8 -8.8 72 600 A K H >4 S+ 0 0 71 -5,-0.4 3,-0.9 2,-0.2 4,-0.3 0.868 109.4 49.8 -83.9 -40.8 8.5 1.3 -8.7 73 601 A S H >< S+ 0 0 2 -4,-1.6 3,-1.2 -3,-0.3 -2,-0.2 0.837 107.0 56.0 -66.9 -33.2 6.1 -0.1 -6.2 74 602 A E G >< S+ 0 0 77 -4,-2.8 3,-1.2 1,-0.2 -1,-0.3 0.586 90.9 75.6 -74.7 -9.8 3.2 1.2 -8.3 75 603 A R G < S+ 0 0 180 -3,-0.9 -1,-0.2 -5,-0.3 -2,-0.2 0.692 86.1 61.6 -74.1 -18.8 4.5 -0.7 -11.2 76 604 A L G < S+ 0 0 39 -3,-1.2 3,-0.5 -4,-0.3 -1,-0.3 0.267 77.9 140.3 -90.1 11.2 3.2 -3.9 -9.7 77 605 A H < + 0 0 65 -3,-1.2 10,-0.2 1,-0.2 12,-0.1 -0.156 65.8 19.5 -54.3 148.4 -0.3 -2.5 -9.9 78 606 A R S S+ 0 0 181 8,-0.5 2,-0.2 1,-0.2 -1,-0.2 0.916 94.1 156.3 54.5 47.0 -3.0 -5.0 -11.0 79 607 A K E -D 86 0B 89 7,-0.9 7,-2.5 -3,-0.5 2,-0.6 -0.683 46.0-114.8-103.2 157.8 -0.8 -7.9 -10.0 80 608 A K E -D 85 0B 155 -2,-0.2 2,-0.6 5,-0.2 5,-0.2 -0.824 30.4-175.4 -96.1 119.2 -1.7 -11.5 -9.0 81 609 A L E > S-D 84 0B 19 3,-3.1 3,-0.8 -2,-0.6 -46,-0.0 -0.939 72.5 -21.0-118.9 112.0 -0.9 -12.4 -5.5 82 610 A N T 3 S- 0 0 120 -2,-0.6 -1,-0.2 1,-0.3 3,-0.1 0.843 128.2 -51.6 62.1 34.1 -1.6 -16.0 -4.4 83 611 A G T 3 S+ 0 0 67 1,-0.2 2,-0.4 -3,-0.0 -1,-0.3 0.664 120.7 110.3 77.3 16.1 -4.0 -16.4 -7.3 84 612 A R E < S-D 81 0B 147 -3,-0.8 -3,-3.1 -60,-0.0 -1,-0.2 -0.988 72.8-115.8-129.4 127.0 -5.9 -13.3 -6.2 85 613 A E E -D 80 0B 99 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.2 -0.268 32.4-157.8 -58.1 139.9 -5.9 -10.0 -8.1 86 614 A A E -D 79 0B 0 -7,-2.5 -7,-0.9 -10,-0.1 -8,-0.5 -0.965 7.2-153.7-126.3 141.2 -4.3 -7.1 -6.2 87 615 A F E -B 21 0A 58 -66,-1.9 -66,-2.4 -2,-0.4 2,-0.6 -0.956 5.9-166.0-117.9 124.7 -4.7 -3.3 -6.5 88 616 A V E -B 20 0A 11 -2,-0.5 2,-0.5 -68,-0.2 -68,-0.2 -0.928 5.9-171.2-113.4 114.3 -2.0 -0.8 -5.6 89 617 A H E -B 19 0A 92 -70,-2.3 -70,-2.9 -2,-0.6 2,-0.5 -0.888 16.6-137.2-107.4 131.9 -3.0 2.8 -5.3 90 618 A V E +B 18 0A 49 -2,-0.5 2,-0.3 -72,-0.2 -72,-0.2 -0.742 33.6 161.4 -89.9 128.0 -0.4 5.6 -4.8 91 619 A V E -B 17 0A 31 -74,-2.1 -74,-0.8 -2,-0.5 -75,-0.4 -0.931 40.5 -89.8-141.2 164.2 -1.3 8.3 -2.2 92 620 A T >> - 0 0 41 -2,-0.3 4,-1.8 -77,-0.2 3,-0.5 -0.396 40.3-110.5 -74.5 151.5 0.5 11.0 -0.2 93 621 A L H >> S+ 0 0 52 -79,-1.0 4,-2.4 1,-0.2 3,-0.6 0.924 117.3 59.1 -44.2 -57.5 1.8 10.2 3.3 94 622 A E H 3> S+ 0 0 127 1,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.882 105.4 49.6 -39.3 -52.7 -0.9 12.3 4.9 95 623 A D H <> S+ 0 0 69 -3,-0.5 4,-2.6 1,-0.2 -1,-0.3 0.902 109.7 52.0 -56.1 -43.8 -3.5 10.2 3.3 96 624 A M H