==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-APR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 30-MAR-08 3CP1 . COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR Z.M.WANG,J.J.DWYER . 73 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6396.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 91.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 65 89.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A T > 0 0 135 0, 0.0 4,-3.6 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -29.5 21.8 20.3 11.9 2 4 A V H > + 0 0 124 2,-0.2 4,-1.5 1,-0.2 5,-0.1 0.928 360.0 41.7 -60.8 -46.2 22.4 20.0 8.2 3 5 A Q H > S+ 0 0 175 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.810 114.7 53.3 -70.7 -31.7 22.9 16.3 8.4 4 6 A A H > S+ 0 0 58 2,-0.2 4,-1.7 1,-0.2 3,-0.2 0.952 109.2 47.9 -61.5 -50.5 19.9 16.2 10.9 5 7 A R H X S+ 0 0 122 -4,-3.6 4,-1.7 1,-0.2 -2,-0.2 0.810 107.7 58.0 -61.2 -31.7 17.7 18.0 8.3 6 8 A Q H X S+ 0 0 124 -4,-1.5 4,-2.0 2,-0.2 -1,-0.2 0.890 104.7 47.6 -69.9 -43.3 18.8 15.6 5.6 7 9 A L H X S+ 0 0 118 -4,-1.5 4,-2.1 -3,-0.2 -2,-0.2 0.945 113.6 48.1 -61.2 -49.0 17.7 12.4 7.3 8 10 A L H X S+ 0 0 96 -4,-1.7 4,-2.5 1,-0.2 -2,-0.2 0.846 111.1 51.7 -59.9 -36.1 14.3 14.0 8.1 9 11 A S H X S+ 0 0 47 -4,-1.7 4,-1.9 2,-0.2 -1,-0.2 0.832 109.2 49.8 -71.3 -33.9 14.1 15.2 4.5 10 12 A G H X S+ 0 0 32 -4,-2.0 4,-1.9 2,-0.2 -2,-0.2 0.831 111.0 50.1 -70.1 -32.7 14.8 11.7 3.3 11 13 A I H X S+ 0 0 79 -4,-2.1 4,-1.6 2,-0.2 -2,-0.2 0.938 112.4 45.3 -70.5 -48.4 12.1 10.3 5.6 12 14 A V H X S+ 0 0 18 -4,-2.5 4,-1.5 1,-0.2 -2,-0.2 0.874 113.1 51.9 -61.5 -38.3 9.5 12.8 4.4 13 15 A Q H X S+ 0 0 98 -4,-1.9 4,-2.0 1,-0.2 -1,-0.2 0.910 107.9 52.2 -62.9 -40.9 10.6 12.1 0.8 14 16 A Q H X S+ 0 0 99 -4,-1.9 4,-2.4 1,-0.2 -2,-0.2 0.797 104.3 56.2 -67.3 -29.5 10.1 8.3 1.5 15 17 A Q H X S+ 0 0 87 -4,-1.6 4,-2.5 2,-0.2 -1,-0.2 0.882 107.2 48.7 -69.9 -36.5 6.6 9.0 2.8 16 18 A N H X S+ 0 0 45 -4,-1.5 4,-2.6 2,-0.2 -2,-0.2 0.889 109.9 52.8 -66.9 -40.3 5.7 10.6 -0.5 17 19 A D H X S+ 0 0 61 -4,-2.0 4,-2.4 2,-0.2 -2,-0.2 0.951 112.2 45.1 -53.1 -52.1 7.3 7.6 -2.3 18 20 A L H X S+ 0 0 91 -4,-2.4 4,-2.6 1,-0.2 -2,-0.2 0.887 112.5 50.5 -65.0 -41.0 5.1 5.3 -0.2 19 21 A L H X S+ 0 0 14 -4,-2.5 4,-2.6 2,-0.2 -1,-0.2 0.917 111.2 47.6 -65.5 -44.1 1.9 7.4 -0.8 20 22 A R H X S+ 0 0 160 -4,-2.6 4,-2.8 2,-0.2 -2,-0.2 0.905 111.3 52.7 -62.8 -39.9 2.4 7.5 -4.5 21 23 A A H X S+ 0 0 52 -4,-2.4 4,-2.3 -5,-0.2 -2,-0.2 0.933 110.2 47.4 -57.7 -49.3 3.0 3.7 -4.4 22 24 A I H X S+ 0 0 80 -4,-2.6 4,-1.4 2,-0.2 -2,-0.2 0.907 111.2 51.6 -58.7 -43.0 -0.2 3.3 -2.6 23 25 A E H >X S+ 0 0 51 -4,-2.6 4,-1.7 2,-0.2 3,-0.6 0.956 109.2 49.2 -61.7 -49.5 -2.1 5.6 -5.0 24 26 A A H 3X S+ 0 0 51 -4,-2.8 4,-1.9 1,-0.3 -1,-0.2 0.903 109.2 52.9 -53.3 -45.8 -0.8 3.6 -8.1 25 27 A Q H 3X S+ 0 0 122 -4,-2.3 4,-2.2 1,-0.2 -1,-0.3 0.769 104.6 57.0 -62.9 -26.4 -1.9 0.3 -6.4 26 28 A Q H 0 0 169 0, 0.0 4,-1.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-161.5 -25.0 -7.9 -3.6 42 53 A E H > + 0 0 119 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.849 360.0 56.9 -67.0 -34.7 -22.9 -8.0 -0.5 43 54 A W H > S+ 0 0 88 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.917 104.8 51.0 -61.6 -45.8 -19.6 -7.8 -2.5 44 55 A D H > S+ 0 0 56 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.861 109.5 51.5 -61.1 -38.6 -20.7 -4.6 -4.2 45 56 A R H X S+ 0 0 147 -4,-1.4 4,-1.9 2,-0.2 -1,-0.2 0.889 112.0 44.8 -65.4 -43.0 -21.5 -3.0 -0.9 46 57 A E H X S+ 0 0 94 -4,-1.9 4,-2.3 2,-0.2 5,-0.3 0.879 109.7 55.4 -72.9 -38.5 -18.1 -3.8 0.6 47 58 A I H X S+ 0 0 33 -4,-2.6 4,-2.2 1,-0.2 -1,-0.2 0.929 112.0 44.5 -55.3 -46.0 -16.2 -2.7 -2.5 48 59 A N H X S+ 0 0 99 -4,-1.8 4,-1.9 2,-0.2 -2,-0.2 0.875 111.5 51.5 -69.7 -39.1 -17.9 0.7 -2.2 49 60 A N H X S+ 0 0 91 -4,-1.9 4,-1.8 1,-0.2 -1,-0.2 0.908 117.0 39.1 -67.6 -40.4 -17.4 1.1 1.5 50 61 A Y H X S+ 0 0 138 -4,-2.3 4,-2.6 2,-0.2 -2,-0.2 0.817 112.6 55.0 -80.0 -32.6 -13.7 0.3 1.3 51 62 A T H X S+ 0 0 28 -4,-2.2 4,-1.9 -5,-0.3 -2,-0.2 0.882 110.6 48.0 -63.2 -39.4 -13.1 2.2 -1.9 52 63 A S H X S+ 0 0 79 -4,-1.9 4,-1.9 2,-0.2 -2,-0.2 0.925 112.2 49.0 -65.7 -47.4 -14.6 5.3 -0.2 53 64 A L H X S+ 0 0 84 -4,-1.8 4,-2.7 1,-0.2 -2,-0.2 0.911 110.6 50.3 -58.0 -46.0 -12.4 4.8 2.9 54 65 A I H X S+ 0 0 41 -4,-2.6 4,-2.3 2,-0.2 -1,-0.2 0.899 109.5 48.7 -67.3 -40.2 -9.3 4.4 0.8 55 66 A H H X S+ 0 0 96 -4,-1.9 4,-2.1 2,-0.2 -1,-0.2 0.891 112.8 49.9 -67.3 -34.8 -9.8 7.6 -1.2 56 67 A S H X S+ 0 0 69 -4,-1.9 4,-2.2 2,-0.2 -2,-0.2 0.922 111.5 47.9 -64.9 -45.5 -10.5 9.4 2.0 57 68 A L H X S+ 0 0 91 -4,-2.7 4,-1.9 1,-0.2 -2,-0.2 0.859 110.9 52.6 -62.7 -35.7 -7.3 8.0 3.6 58 69 A I H X S+ 0 0 16 -4,-2.3 4,-2.1 2,-0.2 -2,-0.2 0.912 109.3 47.7 -68.3 -42.4 -5.3 9.0 0.5 59 70 A E H X S+ 0 0 117 -4,-2.1 4,-2.6 2,-0.2 -2,-0.2 0.929 112.3 48.9 -65.2 -44.1 -6.5 12.6 0.5 60 71 A E H X S+ 0 0 108 -4,-2.2 4,-2.7 1,-0.2 -1,-0.2 0.873 110.4 52.1 -62.5 -37.1 -5.8 13.0 4.2 61 72 A S H X S+ 0 0 54 -4,-1.9 4,-2.1 2,-0.2 -1,-0.2 0.887 109.3 49.8 -64.2 -39.2 -2.3 11.5 3.6 62 73 A Q H X S+ 0 0 75 -4,-2.1 4,-2.1 2,-0.2 -2,-0.2 0.926 110.9 49.2 -66.1 -44.6 -1.7 14.0 0.8 63 74 A N H X S+ 0 0 78 -4,-2.6 4,-1.8 1,-0.2 -2,-0.2 0.941 113.2 46.4 -58.0 -48.5 -2.8 16.8 3.1 64 75 A Q H X S+ 0 0 81 -4,-2.7 4,-2.7 1,-0.2 -1,-0.2 0.853 108.5 56.7 -64.4 -32.9 -0.5 15.6 5.8 65 76 A Q H X S+ 0 0 11 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.913 106.6 49.4 -63.5 -41.8 2.3 15.2 3.3 66 77 A E H X S+ 0 0 131 -4,-2.1 4,-1.5 2,-0.2 -1,-0.2 0.881 112.4 47.7 -65.1 -37.9 2.0 18.8 2.3 67 78 A K H X S+ 0 0 110 -4,-1.8 4,-3.0 2,-0.2 5,-0.3 0.946 109.9 51.7 -67.7 -48.3 2.1 19.9 6.0 68 79 A N H X S+ 0 0 43 -4,-2.7 4,-2.1 1,-0.2 -2,-0.2 0.875 111.4 47.8 -56.4 -40.2 5.1 17.8 6.8 69 80 A E H X S+ 0 0 75 -4,-1.9 4,-1.3 2,-0.2 -1,-0.2 0.826 112.6 48.1 -74.7 -29.9 7.1 19.2 3.9 70 81 A Q H X S+ 0 0 105 -4,-1.5 4,-0.6 2,-0.2 -2,-0.2 0.879 113.1 48.6 -74.6 -38.0 6.2 22.8 4.8 71 82 A E H >< S+ 0 0 108 -4,-3.0 3,-0.6 1,-0.2 -2,-0.2 0.868 109.6 52.3 -67.2 -38.5 7.1 22.1 8.4 72 83 A L H 3< S+ 0 0 40 -4,-2.1 -1,-0.2 -5,-0.3 -2,-0.2 0.858 106.6 54.0 -64.0 -35.3 10.4 20.6 7.3 73 84 A L H 3< 0 0 133 -4,-1.3 -1,-0.2 -5,-0.1 -2,-0.2 0.645 360.0 360.0 -76.9 -14.5 11.2 23.7 5.3 74 85 A E << 0 0 139 -4,-0.6 -3,-0.0 -3,-0.6 0, 0.0 -0.400 360.0 360.0-108.2 360.0 10.7 25.9 8.3