==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 11-AUG-99 1CQU . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L9; . SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; . AUTHOR Y.HUA,B.KUHLMAN,D.HOFFMAN,D.P.RALEIGH . 56 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4512.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 67.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 16.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 16.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 69 0, 0.0 20,-0.7 0, 0.0 38,-0.2 0.000 360.0 360.0 360.0 75.3 -7.8 7.2 -2.4 2 2 A K E -A 20 0A 111 37,-0.3 37,-2.9 18,-0.2 2,-0.5 -0.154 360.0-139.1 -49.7 151.3 -5.3 6.2 -5.1 3 3 A V E -AB 19 38A 0 16,-1.6 16,-2.9 35,-0.2 2,-1.1 -0.948 23.5-160.0-133.0 130.9 -4.3 2.6 -4.2 4 4 A I E -AB 18 37A 3 33,-2.3 33,-1.0 -2,-0.5 2,-0.3 -0.748 20.6-153.9 -96.9 90.0 -1.1 0.7 -4.1 5 5 A F E -AB 17 36A 6 12,-2.6 12,-1.5 -2,-1.1 31,-0.4 -0.502 3.0-161.4 -64.8 124.6 -2.2 -2.9 -4.2 6 6 A L S S+ 0 0 67 29,-2.5 10,-0.6 -2,-0.3 2,-0.3 0.808 76.2 22.9 -78.7 -24.8 0.6 -4.8 -2.6 7 7 A K S S- 0 0 129 28,-1.8 10,-0.1 8,-0.3 7,-0.1 -0.877 94.4 -93.2-133.1 166.3 -0.5 -8.0 -4.1 8 8 A D - 0 0 86 -2,-0.3 6,-0.3 1,-0.1 2,-0.1 -0.293 38.9-160.8 -74.1 166.2 -2.7 -9.0 -7.1 9 9 A V - 0 0 39 4,-1.1 2,-3.4 -4,-0.1 -1,-0.1 -0.190 57.9 -27.4-123.2-142.1 -6.4 -9.5 -6.7 10 10 A K S S- 0 0 199 1,-0.2 -2,-0.0 -2,-0.1 0, 0.0 -0.197 115.2 -63.5 -72.0 56.6 -9.1 -11.3 -8.7 11 11 A G S S+ 0 0 72 -2,-3.4 -1,-0.2 2,-0.1 3,-0.1 0.769 132.2 83.3 70.6 21.9 -7.0 -10.6 -11.9 12 12 A K S S+ 0 0 123 1,-0.1 -1,-0.1 0, 0.0 -4,-0.0 0.682 76.7 50.1-119.4 -66.5 -7.5 -6.9 -11.3 13 13 A G S S- 0 0 0 -9,-0.0 -4,-1.1 1,-0.0 2,-0.3 -0.230 70.7-152.6 -70.6 167.6 -5.1 -5.4 -8.9 14 14 A K > - 0 0 107 -6,-0.3 3,-2.4 3,-0.2 -7,-0.1 -0.988 36.6 -64.2-142.4 151.9 -1.3 -6.0 -9.3 15 15 A K T 3 S- 0 0 141 -2,-0.3 -8,-0.3 1,-0.3 -9,-0.3 0.058 114.9 -22.0 -32.8 137.3 1.7 -6.2 -6.9 16 16 A G T 3 S+ 0 0 18 -10,-0.6 2,-0.5 -12,-0.2 -1,-0.3 0.718 95.3 163.0 19.9 45.8 2.3 -2.7 -5.4 17 17 A E E < -A 5 0A 40 -3,-2.4 -12,-2.6 -12,-1.5 2,-0.7 -0.750 32.1-142.1 -90.4 128.9 0.4 -1.2 -8.3 18 18 A I E +A 4 0A 77 -2,-0.5 2,-0.3 -14,-0.3 -14,-0.3 -0.782 47.0 122.5 -95.1 117.2 -0.8 2.3 -7.7 19 19 A K E -A 3 0A 92 -16,-2.9 -16,-1.6 -2,-0.7 2,-0.6 -0.964 64.9 -98.3-160.6 153.7 -4.3 3.1 -9.1 20 20 A N E -A 2 0A 77 -18,-0.3 -18,-0.2 -2,-0.3 3,-0.2 -0.701 37.3-175.4 -88.0 125.4 -7.4 4.3 -7.4 21 21 A V - 0 0 13 -20,-0.7 2,-0.8 -2,-0.6 -1,-0.1 0.166 69.1 -30.2 -86.9-143.4 -9.8 1.5 -6.6 22 22 A A S > S- 0 0 50 1,-0.2 4,-2.5 2,-0.1 5,-0.3 -0.625 72.3-125.9 -74.4 112.6 -13.1 2.6 -5.2 23 23 A D T 4 S+ 0 0 101 -2,-0.8 4,-0.5 1,-0.3 -1,-0.2 0.764 112.5 31.0 -31.6 -31.2 -11.8 5.7 -3.4 24 24 A G T > S+ 0 0 38 2,-0.2 4,-2.0 3,-0.1 3,-0.4 0.818 112.6 61.8 -99.5 -36.4 -13.4 4.2 -0.3 25 25 A Y H >>>S+ 0 0 64 1,-0.2 3,-1.4 2,-0.2 4,-1.2 0.973 95.2 66.5 -48.6 -55.9 -12.9 0.5 -1.2 26 26 A A H ><>S+ 0 0 0 -4,-2.5 5,-2.0 1,-0.3 3,-0.6 0.846 114.6 26.3 -29.8 -61.5 -9.2 1.3 -1.1 27 27 A N H 345S+ 0 0 67 -4,-0.5 -1,-0.3 -3,-0.4 -2,-0.2 0.599 120.3 57.9 -86.3 -10.3 -9.3 2.0 2.6 28 28 A N H <<5S- 0 0 115 -4,-2.0 -1,-0.2 -3,-1.4 -2,-0.2 0.313 129.7 -2.2-102.2 11.7 -12.3 -0.3 3.4 29 29 A F T <<>S+ 0 0 83 -4,-1.2 5,-0.6 -3,-0.6 6,-0.3 0.300 130.8 44.6-161.0 -52.7 -10.8 -3.5 2.0 30 30 A L I XS+ 0 0 0 -5,-0.9 6,-2.5 -4,-0.3 5,-1.9 0.860 124.0 35.4 -77.7 -34.1 -7.3 -3.4 0.5 31 31 A F I > - 0 0 27 1,-0.2 4,-3.6 -2,-0.1 3,-1.5 -0.998 57.0-117.6-143.9 148.2 0.6 8.3 -0.4 41 41 A P H 3> S+ 0 0 100 0, 0.0 4,-2.0 0, 0.0 5,-0.4 0.951 113.3 66.2 -49.2 -51.9 3.9 9.9 -1.0 42 42 A A H 34 S+ 0 0 81 1,-0.2 4,-0.4 2,-0.1 -3,-0.1 0.850 123.6 16.0 -37.0 -42.1 5.1 8.5 2.3 43 43 A N H <> S+ 0 0 68 -3,-1.5 4,-1.9 -5,-0.2 -1,-0.2 0.849 115.2 67.9-102.3 -51.0 4.8 5.0 0.6 44 44 A L H X S+ 0 0 54 -4,-3.6 4,-1.1 1,-0.2 5,-0.2 0.880 101.0 55.2 -37.9 -46.7 4.5 5.7 -3.1 45 45 A K H >X S+ 0 0 152 -4,-2.0 4,-2.7 -5,-0.3 3,-2.4 0.982 103.5 51.8 -53.6 -61.5 8.2 6.8 -3.0 46 46 A A H 3> S+ 0 0 32 -4,-0.4 4,-4.2 -5,-0.4 5,-0.3 0.895 99.8 65.2 -43.5 -44.1 9.4 3.6 -1.4 47 47 A L H 3< S+ 0 0 56 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.882 114.7 31.1 -50.1 -35.7 7.7 1.7 -4.2 48 48 A E H X< S+ 0 0 136 -3,-2.4 3,-2.3 -4,-1.1 -2,-0.2 0.913 119.6 51.0 -88.5 -49.8 10.2 3.3 -6.5 49 49 A A H >< S+ 0 0 51 -4,-2.7 3,-3.2 1,-0.3 -3,-0.2 0.929 102.4 62.4 -53.5 -42.2 13.1 3.6 -4.1 50 50 A Q T 3< S+ 0 0 148 -4,-4.2 -1,-0.3 -5,-0.4 -2,-0.2 0.786 98.9 58.4 -55.1 -21.3 12.7 -0.1 -3.4 51 51 A K T < S+ 0 0 131 -3,-2.3 2,-0.3 -5,-0.3 -1,-0.3 0.330 81.5 114.5 -91.0 9.3 13.5 -0.5 -7.1 52 52 A Q < + 0 0 131 -3,-3.2 -3,-0.0 1,-0.1 -4,-0.0 -0.617 30.3 147.0 -82.1 136.8 16.9 1.2 -6.7 53 53 A K - 0 0 166 -2,-0.3 2,-0.4 0, 0.0 -1,-0.1 0.258 63.2 -28.5-131.7-100.6 19.9 -1.0 -7.3 54 54 A E S S+ 0 0 180 1,-0.1 -2,-0.0 2,-0.1 0, 0.0 -0.735 82.8 113.9-131.3 88.1 23.3 0.1 -8.8 55 55 A Q 0 0 152 -2,-0.4 -1,-0.1 0, 0.0 -3,-0.0 0.107 360.0 360.0-139.2 21.7 23.0 3.0 -11.2 56 56 A R 0 0 292 -3,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.362 360.0 360.0-146.7 360.0 24.9 5.8 -9.4