==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 19-MAY-05 2CQ2 . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN LOC91801; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 114 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7178.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 61.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 18.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 17.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 18 A G 0 0 124 0, 0.0 2,-1.8 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 104.6 -8.7 20.2 14.1 2 19 A S + 0 0 139 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.561 360.0 132.0 -81.6 80.2 -9.8 16.6 14.6 3 20 A S + 0 0 106 -2,-1.8 2,-0.3 2,-0.0 0, 0.0 -0.986 19.4 151.5-134.4 143.4 -11.1 16.0 11.1 4 21 A G - 0 0 63 -2,-0.4 2,-0.3 3,-0.0 3,-0.2 -0.855 16.2-167.6-172.0 133.8 -10.7 13.2 8.6 5 22 A S S S+ 0 0 92 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.918 71.7 11.7-126.8 152.5 -12.6 11.5 5.8 6 23 A S S S+ 0 0 73 -2,-0.3 -1,-0.2 1,-0.1 2,-0.1 0.906 89.1 159.8 50.2 47.0 -12.0 8.3 3.9 7 24 A G - 0 0 53 1,-0.2 -1,-0.1 -3,-0.2 -3,-0.0 -0.262 43.0 -76.1 -90.8-178.9 -9.4 7.2 6.4 8 25 A A - 0 0 34 2,-0.1 -1,-0.2 1,-0.1 3,-0.0 0.084 38.8-113.8 -65.1-176.0 -8.0 3.8 7.2 9 26 A K S S+ 0 0 155 90,-0.0 2,-0.2 2,-0.0 -1,-0.1 0.850 94.6 35.0 -90.2 -41.4 -9.8 1.1 9.3 10 27 A H S S- 0 0 43 1,-0.1 3,-0.4 0, 0.0 4,-0.3 -0.539 77.1-122.9-107.6 175.4 -7.5 1.1 12.3 11 28 A T S >> S+ 0 0 86 1,-0.2 4,-1.9 -2,-0.2 3,-0.7 0.683 87.0 99.7 -90.4 -21.6 -5.4 3.8 14.1 12 29 A L H 3> S+ 0 0 90 1,-0.3 4,-1.6 2,-0.2 -1,-0.2 0.777 87.3 50.1 -33.4 -34.7 -2.1 2.0 13.6 13 30 A L H 3>>S+ 0 0 13 -3,-0.4 4,-2.0 2,-0.2 5,-1.7 0.945 104.8 53.8 -73.1 -50.5 -1.7 4.4 10.7 14 31 A R H <45S+ 0 0 181 -3,-0.7 -2,-0.2 -4,-0.3 -1,-0.2 0.910 110.6 49.1 -50.1 -48.0 -2.5 7.6 12.7 15 32 A H H <5S+ 0 0 142 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.990 106.4 51.4 -56.0 -70.8 0.1 6.7 15.3 16 33 A E H <5S- 0 0 97 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.809 115.4-118.5 -36.5 -38.4 3.0 5.9 12.9 17 34 A G T <5 + 0 0 31 -4,-2.0 2,-0.6 1,-0.2 -3,-0.2 0.783 52.0 164.6 99.0 34.7 2.2 9.3 11.4 18 35 A I < - 0 0 27 -5,-1.7 2,-0.5 2,-0.0 -1,-0.2 -0.768 22.7-154.3 -89.9 117.5 1.3 8.3 7.9 19 36 A E - 0 0 153 -2,-0.6 2,-0.4 -5,-0.0 -5,-0.0 -0.789 13.7-176.1 -94.8 128.5 -0.5 11.1 6.0 20 37 A T - 0 0 47 -2,-0.5 83,-0.2 83,-0.1 82,-0.1 -0.975 14.9-138.3-127.3 138.2 -2.8 10.0 3.1 21 38 A V - 0 0 27 81,-1.6 81,-0.4 -2,-0.4 4,-0.1 -0.187 13.1-130.8 -82.8 179.3 -4.8 12.2 0.7 22 39 A S S S+ 0 0 73 79,-0.1 80,-0.1 2,-0.1 -1,-0.1 0.782 82.8 72.5-100.2 -37.9 -8.3 11.7 -0.6 23 40 A Y S S- 0 0 120 1,-0.1 2,-0.3 79,-0.1 -2,-0.1 0.025 98.1 -77.8 -68.0-178.2 -7.8 12.0 -4.3 24 41 A A - 0 0 38 78,-0.1 2,-0.4 4,-0.0 -1,-0.1 -0.682 47.3-177.9 -88.6 137.7 -6.0 9.5 -6.5 25 42 A T - 0 0 13 -2,-0.3 78,-0.4 2,-0.3 79,-0.0 -0.981 36.3-129.3-140.4 125.6 -2.3 9.2 -6.5 26 43 A Q S S+ 0 0 87 -2,-0.4 44,-1.6 76,-0.1 2,-0.2 0.803 97.6 71.3 -37.2 -36.8 0.0 7.0 -8.5 27 44 A S E -AB 69 103A 12 76,-0.5 76,-1.6 42,-0.2 2,-0.3 -0.551 68.0-176.2 -85.9 150.6 1.6 6.1 -5.2 28 45 A L E -AB 68 102A 0 40,-2.1 40,-1.9 74,-0.2 2,-0.5 -0.942 20.5-133.7-142.6 163.2 -0.2 4.0 -2.6 29 46 A V E -AB 67 101A 0 72,-1.7 72,-1.6 -2,-0.3 2,-0.7 -0.971 14.2-144.1-126.0 119.4 0.3 2.7 1.0 30 47 A V E > -AB 66 100A 3 36,-1.9 36,-1.5 -2,-0.5 3,-0.6 -0.712 20.4-158.0 -84.3 114.1 -0.4 -0.9 2.0 31 48 A A E 3 S+ B 0 99A 0 68,-2.4 68,-0.5 -2,-0.7 34,-0.1 -0.560 71.4 18.3 -90.6 155.7 -1.8 -1.0 5.5 32 49 A N T 3 S+ 0 0 34 66,-0.2 -1,-0.2 -2,-0.2 33,-0.2 0.778 117.5 79.2 57.1 26.6 -1.7 -4.1 7.8 33 50 A G <> + 0 0 0 31,-2.1 4,-0.8 -3,-0.6 -1,-0.2 0.000 40.5 113.0-127.7-126.5 1.1 -5.3 5.6 34 51 A G T >4>S- 0 0 0 2,-0.2 3,-2.4 1,-0.1 5,-0.9 0.358 86.3 -70.1 63.0 156.0 4.8 -4.7 5.2 35 52 A L G >>5S+ 0 0 73 25,-0.4 3,-2.0 1,-0.3 4,-0.6 0.898 130.8 67.4 -44.2 -50.3 7.5 -7.2 5.9 36 53 A G G 345S+ 0 0 53 27,-0.6 -1,-0.3 24,-0.4 -2,-0.2 0.802 95.2 58.1 -41.6 -34.8 6.8 -6.8 9.6 37 54 A N G <<5S- 0 0 41 -3,-2.4 -1,-0.3 -4,-0.8 54,-0.3 -0.053 126.7-102.1 -88.9 33.2 3.5 -8.5 8.8 38 55 A G T <45S+ 0 0 28 -3,-2.0 53,-1.9 1,-0.2 2,-0.7 0.823 80.2 141.4 51.3 33.3 5.3 -11.5 7.4 39 56 A V << - 0 0 3 -5,-0.9 -1,-0.2 -4,-0.6 -2,-0.2 -0.894 36.1-159.6-111.9 105.3 4.5 -10.2 4.0 40 57 A S >> - 0 0 53 -2,-0.7 4,-1.2 -3,-0.1 3,-1.0 -0.302 28.7-113.9 -77.2 164.2 7.4 -10.7 1.5 41 58 A R H 3> S+ 0 0 158 1,-0.3 4,-3.2 2,-0.2 3,-0.4 0.895 119.3 52.0 -64.7 -41.2 7.8 -8.6 -1.7 42 59 A N H 34 S+ 0 0 124 1,-0.2 -1,-0.3 2,-0.2 -2,-0.0 0.506 112.4 48.9 -73.7 -3.0 7.2 -11.7 -3.9 43 60 A Q H <4 S+ 0 0 81 -3,-1.0 -1,-0.2 2,-0.1 -2,-0.2 0.598 121.2 31.2-108.0 -19.9 4.0 -12.3 -1.8 44 61 A L H >X S+ 0 0 7 -4,-1.2 4,-1.3 -3,-0.4 3,-1.0 0.758 111.8 60.3-105.7 -39.1 2.6 -8.7 -2.1 45 62 A L H >X S+ 0 0 36 -4,-3.2 4,-1.6 1,-0.3 3,-0.5 0.900 94.6 66.5 -56.6 -42.8 3.9 -7.6 -5.5 46 63 A P H 3> S+ 0 0 56 0, 0.0 4,-1.7 0, 0.0 -1,-0.3 0.828 105.2 43.6 -48.1 -36.8 2.0 -10.5 -7.1 47 64 A V H <> S+ 0 0 21 -3,-1.0 4,-1.0 2,-0.2 -2,-0.2 0.787 110.8 54.0 -80.9 -29.6 -1.3 -8.8 -6.0 48 65 A L H - 0 0 17 0, 0.0 3,-0.9 0, 0.0 -25,-0.4 -0.422 24.6-110.7 -69.8 137.8 10.5 -0.5 4.6 61 78 A P T 3 S+ 0 0 95 0, 0.0 -27,-0.0 0, 0.0 0, 0.0 -0.397 97.5 11.6 -69.8 143.1 12.1 -3.0 7.1 62 79 A N T 3 S+ 0 0 147 1,-0.2 -28,-0.0 -2,-0.1 3,-0.0 0.864 101.6 123.9 57.8 37.5 10.3 -3.5 10.4 63 80 A K < - 0 0 64 -3,-0.9 -27,-0.6 1,-0.1 -26,-0.3 -0.976 55.8-156.6-135.0 121.3 7.3 -1.6 9.1 64 81 A P S S+ 0 0 33 0, 0.0 -31,-2.1 0, 0.0 2,-0.4 0.538 83.6 64.3 -69.7 -5.7 3.7 -3.0 8.9 65 82 A Y - 0 0 20 -33,-0.2 2,-0.2 -34,-0.1 -34,-0.2 -0.926 63.9-178.1-122.8 146.7 3.1 -0.5 6.1 66 83 A S E -A 30 0A 0 -36,-1.5 -36,-1.9 -2,-0.4 2,-0.4 -0.798 18.7-128.1-133.9 175.5 4.5 -0.3 2.6 67 84 A F E -AC 29 58A 12 -9,-2.8 -9,-2.2 -38,-0.3 2,-0.3 -0.994 17.3-166.6-133.1 135.8 4.4 1.9 -0.5 68 85 A A E -AC 28 57A 0 -40,-1.9 -40,-2.1 -2,-0.4 2,-0.5 -0.869 8.6-152.2-120.7 154.3 3.7 1.0 -4.1 69 86 A R E -AC 27 56A 89 -13,-1.8 -14,-2.2 -2,-0.3 -13,-1.7 -0.937 13.0-163.0-130.9 110.3 4.2 2.9 -7.3 70 87 A Y E - C 0 54A 2 -44,-1.6 -16,-0.2 -2,-0.5 3,-0.1 -0.282 25.3-123.5 -83.6 172.4 2.0 2.0 -10.4 71 88 A R S S+ 0 0 156 -18,-1.0 2,-0.4 1,-0.3 -1,-0.1 0.880 94.3 23.3 -83.2 -42.7 2.6 3.0 -14.0 72 89 A T S >> S- 0 0 53 -19,-0.2 4,-1.5 1,-0.1 3,-1.1 -0.986 74.9-126.1-130.3 137.5 -0.7 4.8 -14.6 73 90 A T H 3> S+ 0 0 59 -2,-0.4 4,-2.0 1,-0.3 5,-0.3 0.911 108.6 62.9 -41.0 -59.8 -3.0 6.4 -12.1 74 91 A E H 3> S+ 0 0 135 1,-0.2 4,-2.5 2,-0.2 -1,-0.3 0.847 104.4 49.2 -33.7 -51.9 -6.0 4.4 -13.4 75 92 A E H <> S+ 0 0 37 -3,-1.1 4,-2.2 2,-0.2 5,-0.3 0.966 107.3 53.0 -55.6 -58.1 -4.2 1.3 -12.3 76 93 A S H X S+ 0 0 0 -4,-1.5 4,-2.4 1,-0.2 3,-0.3 0.915 111.4 46.6 -43.0 -56.7 -3.4 2.6 -8.8 77 94 A K H X S+ 0 0 97 -4,-2.0 4,-2.8 1,-0.2 5,-0.4 0.937 107.1 57.1 -53.2 -52.0 -7.1 3.4 -8.2 78 95 A R H X S+ 0 0 134 -4,-2.5 4,-1.0 -5,-0.3 -1,-0.2 0.876 113.6 40.5 -47.4 -43.3 -8.2 0.0 -9.6 79 96 A A H X>S+ 0 0 0 -4,-2.2 4,-1.7 -3,-0.3 5,-1.3 0.812 111.4 57.2 -76.4 -31.6 -6.0 -1.6 -6.9 80 97 A Y H <5S+ 0 0 50 -4,-2.4 20,-0.3 -5,-0.3 -2,-0.2 0.853 115.1 36.8 -67.4 -35.4 -7.0 0.9 -4.3 81 98 A V H <5S+ 0 0 108 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 0.647 130.7 33.2 -89.9 -18.0 -10.7 0.1 -4.7 82 99 A T H <5S+ 0 0 77 -4,-1.0 4,-0.4 -5,-0.4 -3,-0.2 0.864 122.9 38.7-100.0 -62.8 -9.9 -3.6 -5.2 83 100 A L T ><5S+ 0 0 9 -4,-1.7 3,-2.4 -5,-0.2 15,-0.2 0.926 96.8 92.3 -55.5 -48.5 -6.9 -4.5 -3.1 84 101 A N T 3 - 0 0 10 4,-1.9 3,-1.0 -2,-0.3 -51,-0.2 -0.239 36.2 -84.9 -89.4-178.5 0.6 -14.3 5.0 91 108 A D T 3 S+ 0 0 120 -53,-1.9 -53,-0.1 1,-0.3 -52,-0.1 0.887 131.0 54.7 -54.0 -41.8 3.8 -16.2 5.6 92 109 A L T 3 S- 0 0 142 2,-0.1 -1,-0.3 -54,-0.1 3,-0.1 0.789 120.5-112.1 -63.7 -27.6 2.2 -17.8 8.7 93 110 A G S < S+ 0 0 47 -3,-1.0 2,-0.4 1,-0.3 -2,-0.1 0.558 75.5 127.3 105.1 12.4 -0.7 -18.9 6.5 94 111 A Q - 0 0 139 -6,-0.1 -4,-1.9 1,-0.0 -1,-0.3 -0.876 63.4-116.2-106.9 134.0 -3.3 -16.6 8.0 95 112 A K E -D 89 0B 158 -2,-0.4 2,-0.4 -6,-0.2 -6,-0.3 -0.499 34.8-164.7 -68.7 124.2 -5.5 -14.3 5.8 96 113 A I E -D 88 0B 40 -8,-2.6 -8,-1.4 -2,-0.3 2,-0.8 -0.879 18.0-128.5-114.2 145.3 -4.8 -10.7 6.7 97 114 A T E -D 87 0B 49 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.2 -0.814 28.2-169.7 -95.5 110.4 -6.9 -7.6 5.8 98 115 A L - 0 0 7 -12,-1.5 -13,-2.6 -2,-0.8 2,-0.5 -0.742 8.5-152.1-100.3 147.7 -4.8 -4.9 4.1 99 116 A Y E -B 31 0A 50 -68,-0.5 -68,-2.4 -2,-0.3 2,-0.5 -0.973 4.3-153.2-123.9 122.2 -5.9 -1.4 3.4 100 117 A L E -B 30 0A 3 -2,-0.5 2,-0.4 -20,-0.3 -70,-0.2 -0.807 13.8-170.1 -96.4 128.1 -4.6 0.7 0.5 101 118 A N E -B 29 0A 5 -72,-1.6 -72,-1.7 -2,-0.5 2,-0.4 -0.907 27.8-108.4-119.1 146.1 -4.6 4.5 0.9 102 119 A F E -B 28 0A 12 -81,-0.4 -81,-1.6 -2,-0.4 2,-0.4 -0.563 37.3-173.6 -74.0 125.9 -3.9 7.2 -1.7 103 120 A V E -B 27 0A 1 -76,-1.6 -76,-0.5 -78,-0.4 -83,-0.1 -0.982 21.6-165.1-126.8 125.9 -0.6 9.0 -1.0 104 121 A E S S+ 0 0 117 -2,-0.4 2,-0.3 1,-0.2 -1,-0.1 0.908 81.4 16.6 -71.9 -43.8 0.6 12.0 -3.0 105 122 A K - 0 0 156 -80,-0.0 2,-0.3 -78,-0.0 -1,-0.2 -0.926 65.6-174.2-131.0 155.8 4.2 11.7 -1.7 106 123 A V - 0 0 20 -2,-0.3 2,-2.7 -3,-0.1 -39,-0.0 -0.993 39.9-104.3-151.6 142.6 6.3 9.0 -0.0 107 124 A Q - 0 0 131 -2,-0.3 -40,-0.1 2,-0.1 -2,-0.0 -0.382 53.5-175.2 -66.5 76.0 9.7 8.7 1.5 108 125 A W - 0 0 76 -2,-2.7 2,-0.4 2,-0.1 4,-0.1 -0.262 35.6-116.3 -71.7 161.9 11.2 6.7 -1.5 109 126 A S S S+ 0 0 115 2,-0.1 -1,-0.1 -2,-0.0 -2,-0.1 -0.217 86.8 83.7 -93.1 43.6 14.7 5.3 -1.5 110 127 A G S S- 0 0 46 -2,-0.4 2,-0.7 3,-0.0 -2,-0.1 -1.000 86.5-101.3-148.5 147.1 15.8 7.6 -4.3 111 128 A P - 0 0 131 0, 0.0 2,-0.7 0, 0.0 -2,-0.1 -0.535 38.9-129.7 -69.8 108.2 17.0 11.1 -4.9 112 129 A S - 0 0 115 -2,-0.7 2,-0.2 -4,-0.1 0, 0.0 -0.440 23.8-137.9 -62.7 104.3 14.1 13.2 -6.1 113 130 A S 0 0 129 -2,-0.7 -1,-0.1 1,-0.2 -3,-0.0 -0.465 360.0 360.0 -68.0 129.2 15.5 14.9 -9.2 114 131 A G 0 0 123 -2,-0.2 -1,-0.2 0, 0.0 -2,-0.1 0.441 360.0 360.0 98.4 360.0 14.4 18.5 -9.5