==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 19-MAY-05 2CQ3 . COMPND 2 MOLECULE: RNA-BINDING PROTEIN 9; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7913.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 64.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 21.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 15.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 15.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 106 A G 0 0 109 0, 0.0 5,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -52.8 -14.6 25.0 4.1 2 107 A S + 0 0 125 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.809 360.0 49.6-106.1 -54.0 -17.2 26.3 6.5 3 108 A S S S- 0 0 118 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.958 114.2-103.5 -51.7 -59.4 -15.5 29.1 8.5 4 109 A G + 0 0 62 1,-0.1 2,-0.3 0, 0.0 -1,-0.1 0.559 65.4 132.3 128.5 72.6 -14.2 30.8 5.4 5 110 A S + 0 0 105 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.991 18.9 168.9-146.5 151.8 -10.5 30.4 4.5 6 111 A S + 0 0 127 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.921 31.7 90.3-152.2 174.9 -8.4 29.6 1.4 7 112 A G - 0 0 68 -2,-0.3 2,-0.5 1,-0.1 -1,-0.1 0.843 43.3-162.4 93.4 88.0 -4.8 29.5 0.1 8 113 A N - 0 0 122 1,-0.2 -1,-0.1 91,-0.0 3,-0.1 -0.901 16.4-145.7-106.8 122.8 -2.9 26.3 0.6 9 114 A S S S+ 0 0 140 -2,-0.5 2,-0.6 1,-0.2 -1,-0.2 0.914 94.4 35.3 -47.4 -51.4 0.9 26.4 0.3 10 115 A E + 0 0 103 -3,-0.1 -1,-0.2 1,-0.1 87,-0.0 -0.932 60.6 169.7-113.1 116.6 0.9 22.9 -1.1 11 116 A S + 0 0 97 -2,-0.6 2,-0.3 -3,-0.1 -1,-0.1 -0.270 47.1 101.9-117.3 44.7 -2.0 21.9 -3.4 12 117 A K S S- 0 0 168 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.959 74.3-106.7-130.1 147.9 -0.7 18.6 -4.7 13 118 A S - 0 0 67 -2,-0.3 -2,-0.1 1,-0.0 3,-0.0 -0.500 33.3-144.0 -73.7 136.9 -1.4 14.9 -3.8 14 119 A T - 0 0 53 -2,-0.2 48,-0.1 1,-0.1 -1,-0.0 -0.806 30.0 -87.1-105.3 144.2 1.3 13.1 -1.9 15 120 A P - 0 0 63 0, 0.0 2,-0.6 0, 0.0 48,-0.2 -0.103 39.6-146.0 -46.1 136.2 2.3 9.5 -2.3 16 121 A K - 0 0 48 46,-0.4 46,-2.0 48,-0.3 2,-0.5 -0.932 6.1-155.0-115.1 112.9 0.3 7.1 -0.1 17 122 A R E -A 61 0A 61 -2,-0.6 73,-1.3 76,-0.3 44,-0.3 -0.747 12.8-162.4 -89.3 124.6 2.0 4.0 1.3 18 123 A L E -AB 60 89A 2 42,-2.8 42,-1.8 -2,-0.5 2,-0.5 -0.692 11.6-132.2-104.6 158.6 -0.3 1.1 2.1 19 124 A H E -AB 59 88A 50 69,-2.6 69,-2.2 -2,-0.2 2,-0.4 -0.943 21.8-175.4-115.0 127.6 0.3 -1.9 4.3 20 125 A V E +AB 58 87A 3 38,-2.6 38,-1.5 -2,-0.5 2,-0.3 -0.959 6.5 169.3-124.1 139.9 -0.5 -5.5 3.2 21 126 A S E +AB 57 86A 26 65,-1.8 65,-1.4 -2,-0.4 36,-0.2 -0.826 50.5 53.5-138.1 176.2 -0.2 -8.7 5.1 22 127 A N S S+ 0 0 68 34,-1.4 35,-0.2 -2,-0.3 -1,-0.1 0.887 76.0 144.7 62.4 40.0 -1.2 -12.4 4.9 23 128 A I - 0 0 8 33,-0.9 -1,-0.2 -3,-0.1 61,-0.1 -0.877 57.0 -89.8-113.7 144.3 0.5 -12.7 1.5 24 129 A P > - 0 0 8 0, 0.0 3,-0.6 0, 0.0 -1,-0.1 -0.027 27.2-130.7 -46.0 147.8 2.4 -15.7 0.0 25 130 A F T 3 S+ 0 0 116 1,-0.2 32,-0.0 31,-0.1 -2,-0.0 0.684 105.5 66.0 -76.5 -18.5 6.1 -15.8 0.8 26 131 A R T 3 S+ 0 0 178 2,-0.1 -1,-0.2 0, 0.0 -3,-0.0 0.736 80.4 104.2 -74.3 -23.0 6.8 -16.5 -2.9 27 132 A F < - 0 0 27 -3,-0.6 2,-0.3 3,-0.1 -4,-0.0 -0.181 51.6-177.6 -58.4 151.9 5.5 -13.0 -3.8 28 133 A R > - 0 0 144 1,-0.1 4,-1.6 18,-0.0 5,-0.2 -0.854 44.3 -85.5-143.4 177.5 8.1 -10.3 -4.6 29 134 A D H > S+ 0 0 63 -2,-0.3 4,-2.4 1,-0.2 5,-0.2 0.926 121.8 59.7 -52.3 -49.5 8.4 -6.6 -5.5 30 135 A P H > S+ 0 0 69 0, 0.0 4,-1.5 0, 0.0 -1,-0.2 0.910 103.5 50.4 -45.3 -54.6 7.8 -7.4 -9.2 31 136 A D H >> S+ 0 0 63 1,-0.2 4,-2.7 2,-0.2 3,-1.6 0.960 109.3 49.3 -50.6 -61.4 4.3 -8.9 -8.5 32 137 A L H 3X>S+ 0 0 4 -4,-1.6 4,-1.4 1,-0.3 5,-1.0 0.874 107.0 57.3 -46.8 -43.2 3.2 -5.9 -6.4 33 138 A R H 3<5S+ 0 0 162 -4,-2.4 9,-0.3 -5,-0.2 -1,-0.3 0.836 118.2 33.0 -58.7 -33.6 4.3 -3.6 -9.2 34 139 A Q H <5S+ 0 0 54 -4,-2.7 3,-0.9 1,-0.2 4,-0.3 0.942 128.2 29.6 -44.6 -64.7 -0.9 -6.5 -9.3 36 141 A F G >X5S+ 0 0 2 -4,-1.4 3,-2.2 -5,-0.3 4,-1.0 0.854 108.1 74.2 -66.6 -35.4 -1.2 -3.1 -7.7 37 142 A G G 34 - 0 0 99 5,-0.3 5,-0.6 -2,-0.3 3,-0.1 -0.976 39.7-118.0-171.8 173.5 12.5 -13.5 6.9 51 156 A E T 5S+ 0 0 178 -2,-0.3 2,-2.4 1,-0.1 -1,-0.1 0.836 92.1 82.7 -93.2 -41.4 12.8 -17.1 8.2 52 157 A R T 5S- 0 0 223 2,-0.1 2,-0.3 3,-0.0 -1,-0.1 -0.409 112.7 -25.5 -67.0 79.3 13.1 -16.4 11.9 53 158 A G T 5S- 0 0 52 -2,-2.4 2,-0.6 -3,-0.1 -3,-0.1 -0.774 99.8 -48.1 115.6-161.3 9.4 -16.1 12.5 54 159 A S T 5 + 0 0 105 -2,-0.3 2,-0.7 -5,-0.1 -3,-0.1 -0.814 55.4 162.2-120.3 90.6 6.4 -15.3 10.3 55 160 A K < + 0 0 90 -5,-0.6 2,-0.6 -2,-0.6 -5,-0.3 -0.725 12.0 148.5-109.9 81.5 7.1 -12.1 8.3 56 161 A G + 0 0 17 -2,-0.7 -34,-1.4 -7,-0.1 -33,-0.9 -0.672 36.9 91.3-116.2 77.5 4.5 -12.1 5.5 57 162 A F E -AC 21 48A 47 -9,-1.1 -9,-0.6 -2,-0.6 -36,-0.3 -0.931 42.5-176.3-166.3 140.2 3.7 -8.5 4.8 58 163 A G E -AC 20 47A 0 -38,-1.5 -38,-2.6 -2,-0.3 2,-0.4 -0.663 19.6-119.9-129.4-174.8 4.9 -5.7 2.5 59 164 A F E -AC 19 46A 40 -13,-2.5 -13,-2.2 -40,-0.2 2,-0.5 -0.985 12.5-158.0-134.2 143.8 4.3 -2.0 1.6 60 165 A V E -AC 18 45A 2 -42,-1.8 -42,-2.8 -2,-0.4 2,-0.7 -0.977 5.4-155.6-125.8 122.8 3.2 -0.2 -1.5 61 166 A T E -AC 17 44A 11 -17,-2.7 -18,-3.2 -2,-0.5 -17,-1.3 -0.849 15.4-161.9-100.4 109.9 3.9 3.4 -2.2 62 167 A F E - C 0 42A 0 -46,-2.0 -46,-0.4 -2,-0.7 -20,-0.1 -0.414 22.1-133.7 -85.6 163.7 1.4 5.0 -4.7 63 168 A E S S+ 0 0 39 -22,-0.5 2,-0.4 -48,-0.2 -1,-0.1 0.744 90.9 45.1 -87.1 -26.8 1.9 8.2 -6.7 64 169 A N > - 0 0 62 -48,-0.1 4,-0.8 1,-0.1 -48,-0.3 -0.921 65.6-148.9-121.1 145.8 -1.6 9.5 -5.9 65 170 A S H > S+ 0 0 43 -2,-0.4 4,-1.2 2,-0.2 -1,-0.1 0.840 100.1 50.7 -78.2 -35.2 -3.5 9.6 -2.6 66 171 A A H >> S+ 0 0 49 2,-0.2 4,-1.9 1,-0.2 3,-0.8 0.959 110.0 47.2 -67.0 -53.1 -6.9 9.3 -4.3 67 172 A D H 3> S+ 0 0 61 1,-0.3 4,-2.1 2,-0.2 5,-0.2 0.802 107.6 60.2 -59.1 -29.2 -6.0 6.3 -6.4 68 173 A A H 3X S+ 0 0 0 -4,-0.8 4,-2.4 1,-0.2 -1,-0.3 0.857 104.8 47.7 -67.5 -35.9 -4.5 4.7 -3.3 69 174 A D H S+ 0 0 0 -4,-2.1 4,-3.0 2,-0.2 5,-0.6 0.973 108.8 62.2 -68.5 -56.7 -7.4 0.4 -4.7 72 177 A R H X5S+ 0 0 41 -4,-2.4 4,-2.1 1,-0.3 -2,-0.2 0.862 111.1 40.6 -34.4 -55.9 -6.7 -0.1 -1.0 73 178 A E H <5S+ 0 0 114 -4,-1.8 -1,-0.3 2,-0.2 -2,-0.2 0.920 113.4 54.6 -62.7 -45.3 -10.4 -0.9 -0.5 74 179 A K H <5S+ 0 0 156 -4,-1.6 -2,-0.2 -5,-0.2 -1,-0.2 0.937 117.0 35.7 -53.8 -51.9 -10.6 -2.9 -3.7 75 180 A L H ><5S+ 0 0 6 -4,-3.0 2,-2.5 1,-0.1 3,-1.7 0.772 92.8 100.6 -73.7 -26.6 -7.7 -5.2 -2.6 76 181 A H T 3< S-D 83 0B 21 3,-2.2 3,-0.7 -2,-1.1 -2,-0.0 -0.809 72.9 -20.4 -94.3 113.0 -5.1 -14.4 -3.6 81 186 A E T 3 S- 0 0 141 -2,-0.7 -1,-0.2 1,-0.3 3,-0.1 0.873 129.3 -50.9 59.2 38.4 -4.3 -18.0 -4.2 82 187 A G T 3 S+ 0 0 67 -3,-0.4 2,-0.4 1,-0.2 -1,-0.3 0.722 121.0 110.7 72.4 21.0 -7.0 -19.1 -1.8 83 188 A R E < -D 80 0B 123 -3,-0.7 -3,-2.2 -5,-0.0 2,-0.3 -0.953 65.2-135.5-133.7 114.2 -5.6 -16.7 0.8 84 189 A K E -D 79 0B 140 -2,-0.4 2,-0.3 -5,-0.3 -5,-0.2 -0.485 23.6-153.2 -68.7 128.8 -7.5 -13.6 2.0 85 190 A I - 0 0 3 -7,-1.8 -8,-0.6 -2,-0.3 2,-0.4 -0.743 4.8-135.6-104.9 153.0 -5.1 -10.6 2.3 86 191 A E E -B 21 0A 101 -65,-1.4 -65,-1.8 -2,-0.3 2,-0.4 -0.909 17.0-172.2-111.3 133.5 -5.5 -7.6 4.5 87 192 A V E +B 20 0A 0 -2,-0.4 2,-0.3 -67,-0.2 -67,-0.2 -0.979 14.1 157.3-128.7 122.0 -4.9 -4.0 3.3 88 193 A N E -B 19 0A 70 -69,-2.2 -69,-2.6 -2,-0.4 -2,-0.0 -0.976 44.5 -92.5-141.6 153.8 -4.8 -1.0 5.6 89 194 A N E -B 18 0A 84 -2,-0.3 2,-0.3 -71,-0.2 -71,-0.2 -0.339 40.0-141.1 -65.2 143.9 -3.4 2.6 5.6 90 195 A A - 0 0 16 -73,-1.3 -73,-0.2 3,-0.1 -1,-0.1 -0.821 12.5-159.9-110.0 148.9 0.1 3.0 7.2 91 196 A T + 0 0 123 -2,-0.3 3,-0.1 1,-0.1 -73,-0.1 -0.411 66.4 91.6-122.9 55.6 1.3 5.9 9.3 92 197 A A S S+ 0 0 80 -75,-0.1 2,-0.6 1,-0.1 -1,-0.1 0.757 89.8 31.6-111.7 -49.3 5.1 5.5 9.0 93 198 A R S S+ 0 0 183 -76,-0.1 -76,-0.3 -3,-0.1 2,-0.3 -0.718 98.9 87.5-116.0 80.0 6.1 7.7 6.0 94 199 A V - 0 0 84 -2,-0.6 2,-0.4 -3,-0.1 -78,-0.1 -0.956 55.2-146.8-169.3 151.3 3.7 10.6 5.9 95 200 A M - 0 0 161 -2,-0.3 3,-0.1 3,-0.0 -4,-0.0 -0.762 29.6-131.3-129.1 86.3 3.1 14.1 7.2 96 201 A T - 0 0 117 -2,-0.4 2,-0.4 1,-0.2 -2,-0.0 0.012 32.6-106.0 -35.6 130.1 -0.6 14.9 7.7 97 202 A N - 0 0 87 1,-0.1 2,-1.8 5,-0.0 4,-0.3 -0.512 28.6-123.7 -68.3 117.8 -1.3 18.3 6.1 98 203 A S + 0 0 137 -2,-0.4 -1,-0.1 -3,-0.1 4,-0.1 -0.424 68.2 115.0 -64.8 87.2 -1.8 20.8 8.9 99 204 A G S S- 0 0 46 -2,-1.8 -91,-0.0 2,-0.5 -3,-0.0 -0.679 85.1 -70.4-139.5-166.5 -5.3 22.0 7.9 100 205 A P S S+ 0 0 136 0, 0.0 2,-0.4 0, 0.0 -2,-0.1 0.229 106.2 85.0 -77.9 15.7 -8.9 22.1 9.0 101 206 A S - 0 0 85 -4,-0.3 -2,-0.5 0, 0.0 2,-0.2 -0.970 56.2-179.0-124.0 135.1 -9.1 18.4 8.4 102 207 A S 0 0 119 -2,-0.4 -4,-0.0 1,-0.2 -5,-0.0 -0.766 360.0 360.0-125.2 170.8 -8.2 15.6 10.8 103 208 A G 0 0 128 -2,-0.2 -1,-0.2 -7,-0.0 0, 0.0 0.976 360.0 360.0 -79.6 360.0 -8.1 11.8 10.8