==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 19-MAY-05 2CQ4 . COMPND 2 MOLECULE: RNA BINDING MOTIF PROTEIN 23; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 114 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8694.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 57.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 17.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 18.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 125 A G 0 0 132 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 100.9 17.7 -0.2 5.2 2 126 A S + 0 0 123 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.911 360.0 158.2-172.2 143.7 17.0 3.5 5.4 3 127 A S + 0 0 115 -2,-0.3 2,-0.1 2,-0.0 0, 0.0 -0.983 20.0 98.3-163.6 164.3 14.1 5.9 5.7 4 128 A G + 0 0 63 -2,-0.3 2,-0.3 16,-0.1 0, 0.0 -0.032 26.6 161.7 120.3 136.3 13.1 9.5 6.7 5 129 A S - 0 0 55 -2,-0.1 2,-0.4 2,-0.1 -2,-0.0 -0.977 27.2-124.1-171.9 167.4 12.5 12.8 4.9 6 130 A S + 0 0 120 -2,-0.3 2,-0.3 2,-0.0 15,-0.1 -0.985 49.7 92.2-129.9 137.6 10.9 16.2 5.2 7 131 A G - 0 0 45 -2,-0.4 2,-0.3 13,-0.1 -2,-0.1 -0.984 52.8-101.1 169.3-172.6 8.4 17.9 3.1 8 132 A K - 0 0 164 -2,-0.3 13,-0.2 105,-0.0 14,-0.2 -0.955 20.4-124.0-139.4 157.9 4.7 18.7 2.4 9 133 A S - 0 0 82 -2,-0.3 105,-0.1 12,-0.1 4,-0.1 -0.822 32.4-164.6-107.5 95.3 1.9 17.4 0.1 10 134 A P - 0 0 70 0, 0.0 3,-0.0 0, 0.0 -2,-0.0 -0.313 31.5-115.3 -74.9 159.4 0.5 20.3 -1.9 11 135 A V S S+ 0 0 160 1,-0.1 2,-0.4 -2,-0.0 -2,-0.0 0.793 103.3 34.7 -64.5 -28.2 -2.8 20.2 -3.8 12 136 A R S S- 0 0 190 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.975 70.3-162.8-131.2 144.0 -0.9 20.7 -7.0 13 137 A E - 0 0 87 -2,-0.4 -4,-0.0 -4,-0.1 -2,-0.0 -0.964 14.2-131.3-128.6 143.7 2.5 19.4 -8.1 14 138 A P - 0 0 84 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 -0.003 44.5 -81.4 -77.5-173.0 4.8 20.5 -11.0 15 139 A V S S+ 0 0 159 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.164 88.7 125.1 -86.1 41.8 6.6 18.4 -13.6 16 140 A D - 0 0 120 -2,-0.7 3,-0.1 1,-0.2 -3,-0.0 -0.555 69.7 -81.2 -98.6 165.2 9.4 17.6 -11.1 17 141 A N - 0 0 138 -2,-0.2 -1,-0.2 1,-0.2 0, 0.0 -0.172 68.5 -68.1 -61.1 156.9 10.7 14.2 -10.0 18 142 A L - 0 0 101 1,-0.1 -1,-0.2 4,-0.1 0, 0.0 -0.088 55.5-131.7 -46.1 141.8 8.8 12.3 -7.3 19 143 A S > - 0 0 54 -3,-0.1 4,-2.3 1,-0.1 -1,-0.1 -0.764 20.4-111.2-103.3 147.2 9.0 14.0 -3.9 20 144 A P T 4 S+ 0 0 66 0, 0.0 4,-0.3 0, 0.0 -16,-0.1 0.688 123.4 42.1 -45.8 -19.0 9.8 12.3 -0.5 21 145 A E T >> S+ 0 0 56 -13,-0.2 4,-1.2 2,-0.1 3,-0.9 0.841 106.3 57.3 -96.5 -45.3 6.2 13.0 0.3 22 146 A E H 3> S+ 0 0 16 1,-0.3 4,-1.9 2,-0.2 -1,-0.1 0.844 94.4 71.3 -55.1 -35.0 4.5 12.1 -3.0 23 147 A R H 3< S+ 0 0 107 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.1 0.906 98.8 46.7 -47.8 -48.9 6.0 8.6 -2.7 24 148 A D H X4 S+ 0 0 58 -3,-0.9 3,-1.4 -4,-0.3 -1,-0.2 0.916 104.2 62.2 -61.4 -44.9 3.7 7.8 0.2 25 149 A A H 3< S+ 0 0 18 -4,-1.2 2,-1.0 1,-0.3 -1,-0.2 0.911 102.5 50.3 -46.7 -51.4 0.7 9.2 -1.7 26 150 A R T 3< S+ 0 0 39 -4,-1.9 48,-1.1 -3,-0.1 2,-0.4 -0.184 95.4 104.6 -83.9 44.0 1.1 6.5 -4.4 27 151 A T E < -A 73 0A 17 -3,-1.4 74,-0.7 -2,-1.0 75,-0.4 -0.991 53.2-159.4-130.7 132.0 1.3 3.8 -1.8 28 152 A V E -AB 72 100A 0 44,-2.6 44,-1.8 -2,-0.4 2,-0.5 -0.817 11.3-138.1-110.1 149.6 -1.4 1.2 -0.9 29 153 A F E -AB 71 99A 13 70,-2.1 70,-2.4 -2,-0.3 2,-0.3 -0.923 21.7-174.3-110.7 124.1 -1.7 -0.7 2.4 30 154 A C E +AB 70 98A 0 40,-3.3 40,-1.9 -2,-0.5 2,-0.3 -0.756 5.7 170.5-113.8 161.2 -2.7 -4.4 2.3 31 155 A M E + B 0 97A 23 66,-1.5 66,-2.5 -2,-0.3 38,-0.2 -0.911 48.7 58.2-155.0 179.5 -3.5 -6.9 5.0 32 156 A Q S S+ 0 0 78 -2,-0.3 -1,-0.1 64,-0.2 37,-0.1 0.915 70.6 177.0 56.0 46.1 -4.8 -10.4 5.7 33 157 A L - 0 0 21 35,-1.0 -1,-0.1 1,-0.1 35,-0.1 -0.382 30.6 -98.7 -79.1 159.6 -2.1 -12.0 3.5 34 158 A A > - 0 0 21 60,-0.2 3,-0.5 1,-0.1 -1,-0.1 -0.089 27.5-114.1 -69.4 174.2 -1.6 -15.7 3.1 35 159 A A T 3 S+ 0 0 113 1,-0.2 -1,-0.1 33,-0.0 -2,-0.1 0.861 114.3 29.3 -78.8 -38.3 0.9 -17.8 5.0 36 160 A R T 3 S+ 0 0 229 56,-0.1 -1,-0.2 2,-0.0 2,-0.2 -0.358 90.0 143.7-118.4 51.0 3.0 -18.7 1.9 37 161 A I < - 0 0 25 -3,-0.5 -4,-0.0 3,-0.0 3,-0.0 -0.543 31.7-154.3 -90.0 156.8 2.4 -15.6 -0.2 38 162 A R > - 0 0 141 -2,-0.2 4,-1.2 1,-0.1 3,-0.2 -0.930 29.9-109.5-131.5 155.1 4.9 -13.9 -2.5 39 163 A P H >> S+ 0 0 64 0, 0.0 4,-3.0 0, 0.0 3,-0.6 0.880 117.5 56.0 -46.0 -47.2 5.5 -10.4 -3.9 40 164 A R H 3>>S+ 0 0 158 1,-0.2 4,-2.2 2,-0.2 5,-0.6 0.943 96.9 62.1 -52.9 -53.9 4.5 -11.6 -7.4 41 165 A D H 3>5S+ 0 0 29 -3,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.859 114.4 35.6 -39.7 -45.7 1.2 -12.9 -6.2 42 166 A L H X5S+ 0 0 59 -4,-3.0 4,-0.7 2,-0.2 3,-0.7 0.945 115.5 33.3 -45.1 -65.6 2.1 -7.7 -8.1 44 168 A D H ><5S+ 0 0 104 -4,-2.2 3,-1.4 1,-0.3 4,-0.4 0.922 115.0 58.8 -59.2 -46.3 0.1 -9.5 -10.8 45 169 A F H 3< - 0 0 116 -25,-0.1 3,-0.7 -51,-0.1 4,-0.2 -0.954 68.7-119.1-148.0 164.9 -0.4 6.6 -9.9 77 201 A I G > S+ 0 0 53 -2,-0.3 3,-0.8 1,-0.2 -1,-0.1 0.704 109.4 67.7 -78.5 -20.7 -2.7 7.5 -7.0 78 202 A Q G 3 S+ 0 0 149 1,-0.2 4,-0.4 2,-0.2 -1,-0.2 0.619 95.8 57.0 -73.5 -12.3 -5.7 7.3 -9.2 79 203 A S G <> S+ 0 0 11 -3,-0.7 4,-1.4 1,-0.1 -1,-0.2 0.599 89.1 74.5 -92.4 -14.4 -5.2 3.6 -9.4 80 204 A V H <> S+ 0 0 11 -3,-0.8 4,-2.5 -4,-0.2 5,-0.2 0.908 86.0 63.2 -63.8 -43.3 -5.3 3.1 -5.6 81 205 A P H > S+ 0 0 66 0, 0.0 4,-1.4 0, 0.0 -1,-0.2 0.893 103.8 47.5 -47.9 -48.0 -9.1 3.6 -5.6 82 206 A L H > S+ 0 0 107 -4,-0.4 4,-1.4 1,-0.2 -2,-0.2 0.918 109.7 53.0 -62.5 -45.0 -9.6 0.4 -7.7 83 207 A A H X S+ 0 0 0 -4,-1.4 4,-0.5 1,-0.2 -1,-0.2 0.900 102.3 59.8 -57.5 -43.2 -7.2 -1.6 -5.5 84 208 A I H >< S+ 0 0 60 -4,-2.5 3,-1.8 1,-0.2 14,-0.4 0.914 101.6 53.7 -52.2 -47.5 -9.1 -0.6 -2.4 85 209 A G H 3< S+ 0 0 58 -4,-1.4 -1,-0.2 1,-0.3 -2,-0.2 0.899 89.7 74.8 -55.5 -44.0 -12.3 -2.2 -3.7 86 210 A L H >< + 0 0 22 -4,-1.4 3,-0.6 -3,-0.2 -1,-0.3 0.763 65.6 129.2 -40.3 -28.2 -10.5 -5.5 -4.3 87 211 A T T << + 0 0 56 -3,-1.8 10,-0.2 -4,-0.5 -3,-0.0 -0.034 69.9 33.2 -35.5 102.2 -10.8 -5.8 -0.5 88 212 A G T 3 S+ 0 0 54 8,-2.5 2,-0.7 1,-0.2 -1,-0.3 0.595 78.8 142.6 117.6 21.1 -12.2 -9.2 -0.3 89 213 A Q E < -D 96 0B 88 7,-0.7 7,-0.6 -3,-0.6 -1,-0.2 -0.836 58.0-117.6 -98.3 110.0 -10.7 -11.0 -3.3 90 214 A R E -D 95 0B 220 -2,-0.7 2,-0.6 5,-0.2 -1,-0.0 -0.209 38.3-174.3 -46.8 108.0 -9.8 -14.6 -2.5 91 215 A L E > -D 94 0B 21 3,-1.1 3,-1.5 1,-0.2 -57,-0.1 -0.921 68.0 -21.7-116.2 108.5 -6.0 -14.6 -2.9 92 216 A L T 3 S- 0 0 96 -2,-0.6 -1,-0.2 1,-0.3 -56,-0.1 0.784 128.9 -50.8 66.4 27.4 -4.3 -18.0 -2.6 93 217 A G T 3 S+ 0 0 65 1,-0.1 -1,-0.3 -59,-0.1 -3,-0.1 0.208 130.9 86.4 95.4 -15.5 -7.3 -19.3 -0.7 94 218 A V E < S-D 91 0B 59 -3,-1.5 -3,-1.1 -5,-0.1 -60,-0.2 -0.966 81.3-119.2-125.2 119.0 -7.3 -16.4 1.7 95 219 A P E -D 90 0B 47 0, 0.0 2,-0.3 0, 0.0 -5,-0.2 -0.038 28.0-134.1 -49.1 152.3 -9.0 -13.1 1.0 96 220 A I E -D 89 0B 0 -7,-0.6 -8,-2.5 -10,-0.3 -7,-0.7 -0.864 7.3-138.8-115.5 149.3 -6.9 -9.9 0.8 97 221 A I E -B 31 0A 28 -66,-2.5 -66,-1.5 -2,-0.3 2,-0.4 -0.859 16.4-174.0-108.9 141.3 -7.5 -6.5 2.3 98 222 A V E +B 30 0A 1 -14,-0.4 2,-0.3 -2,-0.4 -68,-0.2 -0.989 13.0 154.0-138.0 127.3 -6.8 -3.2 0.6 99 223 A Q E -B 29 0A 92 -70,-2.4 -70,-2.1 -2,-0.4 2,-0.4 -0.995 51.9 -85.6-150.6 151.3 -7.0 0.3 2.1 100 224 A A E > -B 28 0A 20 -2,-0.3 4,-1.2 -72,-0.2 5,-0.2 -0.409 31.1-152.0 -60.3 113.6 -5.6 3.8 1.5 101 225 A S H > S+ 0 0 4 -74,-0.7 4,-0.5 -2,-0.4 -1,-0.2 0.824 97.5 53.2 -56.4 -32.2 -2.3 3.8 3.5 102 226 A Q H >> S+ 0 0 75 -75,-0.4 4,-2.8 -77,-0.2 3,-1.4 0.895 95.1 68.1 -70.7 -41.4 -2.7 7.6 3.8 103 227 A A H 3> S+ 0 0 56 1,-0.3 4,-1.5 2,-0.2 -2,-0.2 0.908 102.1 45.5 -42.7 -55.5 -6.2 7.3 5.3 104 228 A E H 3X S+ 0 0 93 -4,-1.2 4,-1.2 1,-0.2 -1,-0.3 0.736 116.7 50.1 -62.9 -21.9 -4.8 5.7 8.4 105 229 A K H