==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 20-MAY-05 2CQH . COMPND 2 MOLECULE: IGF-II MRNA-BINDING PROTEIN 2 ISOFORM A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7126.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 58.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 19.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 19.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A G 0 0 137 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-109.3 17.2 19.4 -13.3 2 -4 A S + 0 0 118 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.878 360.0 117.2-114.2 100.8 14.9 16.4 -12.7 3 -3 A S - 0 0 131 -2,-0.7 2,-0.3 2,-0.0 0, 0.0 -0.968 29.4-180.0-154.5 166.1 16.6 13.6 -10.8 4 -2 A G - 0 0 76 -2,-0.3 2,-0.7 3,-0.0 3,-0.1 -0.860 28.7-121.4-173.9 136.8 16.5 11.6 -7.6 5 -1 A S - 0 0 118 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.744 43.2-110.3 -87.7 115.8 18.3 8.7 -5.9 6 0 A S + 0 0 124 -2,-0.7 2,-0.1 1,-0.1 3,-0.1 0.069 62.8 124.2 -38.6 150.4 15.9 5.8 -5.1 7 1 A G + 0 0 57 1,-0.5 -1,-0.1 -3,-0.1 -3,-0.0 -0.474 46.6 39.7-169.1-115.7 15.2 5.4 -1.4 8 2 A M - 0 0 130 -2,-0.1 -1,-0.5 1,-0.1 2,-0.2 -0.208 63.9-168.2 -57.9 147.8 12.0 5.2 0.7 9 3 A N - 0 0 79 42,-0.3 42,-0.4 -3,-0.1 2,-0.3 -0.747 8.7-148.7-131.0 178.5 9.1 3.3 -0.9 10 4 A K - 0 0 76 70,-0.3 70,-1.8 -2,-0.2 2,-0.4 -0.941 17.1-114.8-146.2 166.5 5.4 2.8 -0.3 11 5 A L E -AB 49 79A 0 38,-2.8 38,-1.6 -2,-0.3 2,-0.5 -0.889 22.5-136.4-110.1 136.8 2.6 0.2 -0.8 12 6 A Y E -AB 48 78A 92 66,-2.9 66,-2.1 -2,-0.4 2,-0.5 -0.783 15.1-159.0 -94.1 128.4 -0.3 0.6 -3.1 13 7 A I E -AB 47 77A 0 34,-3.2 34,-1.6 -2,-0.5 2,-0.2 -0.924 13.1-178.0-110.9 121.4 -3.8 -0.4 -1.8 14 8 A G E +AB 46 76A 2 62,-2.2 62,-2.2 -2,-0.5 32,-0.1 -0.700 54.9 46.0-114.0 167.4 -6.5 -1.2 -4.3 15 9 A N + 0 0 93 30,-0.5 2,-0.7 -2,-0.2 -1,-0.2 0.894 69.1 160.3 70.8 41.2 -10.2 -2.2 -4.0 16 10 A L - 0 0 10 29,-1.1 -1,-0.2 -3,-0.2 29,-0.2 -0.862 39.3-124.9-101.3 112.6 -10.9 0.4 -1.4 17 11 A S > - 0 0 13 -2,-0.7 3,-1.5 53,-0.3 28,-0.2 -0.070 21.3-115.2 -50.9 151.5 -14.6 1.3 -1.1 18 12 A P T 3 S+ 0 0 129 0, 0.0 -1,-0.2 0, 0.0 28,-0.0 0.465 116.2 58.9 -69.8 0.0 -15.6 4.9 -1.5 19 13 A A T 3 S+ 0 0 54 2,-0.1 2,-0.1 52,-0.0 -2,-0.1 0.546 78.6 110.8-103.8 -13.0 -16.7 4.8 2.1 20 14 A V < - 0 0 9 -3,-1.5 2,-0.3 50,-0.1 -4,-0.0 -0.409 50.5-165.5 -66.2 135.5 -13.3 3.8 3.5 21 15 A T >> - 0 0 69 -2,-0.1 4,-2.0 1,-0.1 3,-0.6 -0.815 35.8-106.9-121.7 162.4 -11.6 6.5 5.6 22 16 A A H 3> S+ 0 0 51 -2,-0.3 4,-2.6 1,-0.3 5,-0.2 0.852 119.5 59.7 -53.6 -36.8 -8.1 7.1 6.9 23 17 A D H 3> S+ 0 0 80 1,-0.2 4,-2.1 2,-0.2 -1,-0.3 0.902 106.1 46.4 -59.4 -42.9 -9.4 6.3 10.4 24 18 A D H <> S+ 0 0 40 -3,-0.6 4,-2.5 2,-0.2 -1,-0.2 0.884 111.1 52.6 -67.3 -39.8 -10.5 2.8 9.2 25 19 A L H X S+ 0 0 0 -4,-2.0 4,-2.2 2,-0.2 -2,-0.2 0.931 113.0 43.0 -62.0 -47.4 -7.2 2.2 7.4 26 20 A R H X S+ 0 0 166 -4,-2.6 4,-2.3 1,-0.2 -1,-0.2 0.874 115.3 50.0 -66.7 -38.3 -5.1 3.0 10.5 27 21 A Q H X S+ 0 0 105 -4,-2.1 4,-2.4 -5,-0.2 -2,-0.2 0.862 110.6 50.2 -68.4 -36.7 -7.5 1.1 12.7 28 22 A L H X S+ 0 0 25 -4,-2.5 4,-1.3 2,-0.2 -2,-0.2 0.940 113.0 44.4 -67.1 -48.7 -7.3 -2.0 10.4 29 23 A F H <>S+ 0 0 1 -4,-2.2 5,-2.4 1,-0.2 3,-0.2 0.922 118.1 44.3 -62.4 -45.7 -3.5 -2.0 10.3 30 24 A G H ><5S+ 0 0 39 -4,-2.3 3,-2.0 1,-0.2 -1,-0.2 0.880 107.3 58.7 -67.5 -38.5 -3.2 -1.5 14.0 31 25 A D H 3<5S+ 0 0 119 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.819 103.5 53.7 -60.1 -31.2 -5.9 -4.0 14.8 32 26 A R T 3<5S- 0 0 138 -4,-1.3 -1,-0.3 -3,-0.2 -2,-0.2 0.145 124.5-105.5 -89.9 19.4 -3.8 -6.6 13.0 33 27 A K T < 5S+ 0 0 189 -3,-2.0 -3,-0.2 1,-0.1 -2,-0.2 0.829 88.0 123.2 60.8 32.4 -0.8 -5.7 15.2 34 28 A L < - 0 0 19 -5,-2.4 -2,-0.1 -6,-0.2 -1,-0.1 -0.701 42.4-171.7-127.4 80.1 0.7 -3.9 12.2 35 29 A P - 0 0 90 0, 0.0 2,-0.7 0, 0.0 -9,-0.0 -0.308 25.0-118.7 -69.8 153.1 1.4 -0.3 13.2 36 30 A L - 0 0 42 1,-0.1 15,-0.1 -10,-0.1 4,-0.1 -0.845 22.6-174.0 -99.4 109.9 2.5 2.3 10.6 37 31 A A S S+ 0 0 86 -2,-0.7 2,-0.1 13,-0.2 -1,-0.1 -0.020 73.8 32.0 -89.7 30.7 6.0 3.8 11.3 38 32 A G S S- 0 0 24 12,-0.2 2,-0.3 1,-0.0 -2,-0.1 -0.369 102.6 -45.1-147.6-132.6 5.6 6.2 8.4 39 33 A Q - 0 0 131 -2,-0.1 11,-2.0 12,-0.0 2,-0.4 -0.865 39.1-145.7-119.8 154.0 2.9 8.1 6.6 40 34 A V E -C 49 0A 57 -2,-0.3 2,-0.4 9,-0.2 9,-0.2 -0.952 9.9-167.6-122.0 139.2 -0.5 7.2 5.3 41 35 A L E -C 48 0A 72 7,-3.3 7,-2.3 -2,-0.4 2,-0.5 -0.987 4.8-161.2-128.7 133.8 -2.3 8.4 2.2 42 36 A L E -C 47 0A 78 -2,-0.4 2,-0.3 5,-0.2 5,-0.3 -0.945 13.9-178.8-118.1 114.9 -5.9 7.9 1.2 43 37 A K E > -C 46 0A 105 3,-2.7 2,-1.5 -2,-0.5 3,-1.1 -0.747 43.3 -89.3-110.0 158.4 -6.9 8.4 -2.5 44 38 A S T 3 S+ 0 0 123 -2,-0.3 3,-0.1 1,-0.3 -27,-0.1 -0.480 119.0 0.9 -67.6 92.0 -10.4 8.1 -4.1 45 39 A G T 3 S+ 0 0 37 -2,-1.5 -29,-1.1 1,-0.3 -30,-0.5 0.163 136.7 32.1 114.7 -16.8 -10.4 4.4 -5.0 46 40 A Y E < -AC 14 43A 88 -3,-1.1 -3,-2.7 -32,-0.1 2,-0.3 -0.926 61.5-150.4-156.4 177.9 -7.0 3.6 -3.5 47 41 A A E -AC 13 42A 0 -34,-1.6 -34,-3.2 -2,-0.3 2,-0.4 -0.990 8.1-139.8-157.2 155.8 -4.5 4.4 -0.8 48 42 A F E -AC 12 41A 42 -7,-2.3 -7,-3.3 -2,-0.3 2,-0.4 -0.933 14.0-170.9-123.2 145.7 -0.7 4.3 -0.0 49 43 A V E -AC 11 40A 1 -38,-1.6 -38,-2.8 -2,-0.4 2,-0.6 -0.996 21.3-128.2-137.7 141.0 1.2 3.4 3.1 50 44 A D - 0 0 29 -11,-2.0 -13,-0.2 -2,-0.4 -12,-0.2 -0.776 24.4-151.7 -91.4 122.2 4.8 3.7 4.1 51 45 A Y - 0 0 43 -2,-0.6 -42,-0.3 -42,-0.4 3,-0.1 -0.701 11.2-144.4 -95.0 144.2 6.4 0.5 5.3 52 46 A P S S- 0 0 58 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.935 79.9 -1.2 -69.8 -48.9 9.3 0.4 7.8 53 47 A D > - 0 0 114 1,-0.1 4,-1.9 0, 0.0 5,-0.1 -0.909 69.8-109.8-140.1 166.6 11.1 -2.6 6.3 54 48 A Q H > S+ 0 0 119 -2,-0.3 4,-2.5 1,-0.2 5,-0.2 0.896 118.4 52.7 -63.7 -41.5 10.8 -5.1 3.5 55 49 A N H > S+ 0 0 113 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.885 108.3 51.0 -62.1 -39.6 10.0 -7.9 5.9 56 50 A W H > S+ 0 0 43 2,-0.2 4,-3.0 1,-0.2 -1,-0.2 0.901 111.0 48.1 -65.1 -42.1 7.3 -5.9 7.5 57 51 A A H X S+ 0 0 0 -4,-1.9 4,-3.2 2,-0.2 5,-0.3 0.945 112.7 47.1 -64.0 -50.0 5.7 -5.1 4.2 58 52 A I H X S+ 0 0 69 -4,-2.5 4,-2.0 1,-0.2 -2,-0.2 0.913 118.4 41.8 -58.6 -45.0 5.7 -8.7 2.9 59 53 A R H X S+ 0 0 170 -4,-2.3 4,-2.0 -5,-0.2 -2,-0.2 0.894 115.7 49.9 -70.0 -41.4 4.3 -10.0 6.3 60 54 A A H X S+ 0 0 1 -4,-3.0 4,-2.1 -5,-0.2 5,-0.3 0.917 111.5 48.3 -63.5 -45.0 1.8 -7.1 6.5 61 55 A I H X S+ 0 0 7 -4,-3.2 4,-1.0 2,-0.2 6,-0.3 0.931 112.9 47.1 -61.6 -47.8 0.6 -7.7 2.9 62 56 A E H < S+ 0 0 93 -4,-2.0 -1,-0.2 -5,-0.3 -2,-0.2 0.850 117.0 44.3 -62.9 -35.1 0.2 -11.5 3.5 63 57 A T H < S+ 0 0 38 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.747 130.3 25.2 -80.7 -25.3 -1.6 -10.8 6.8 64 58 A L H >X S+ 0 0 0 -4,-2.1 3,-2.9 -5,-0.2 4,-0.7 0.848 107.1 69.2-100.4 -71.7 -3.7 -8.0 5.2 65 59 A S T 3< S+ 0 0 25 -4,-1.0 11,-0.2 1,-0.3 -1,-0.1 -0.301 122.6 3.3 -54.7 122.4 -4.1 -8.6 1.5 66 60 A G T 34 S+ 0 0 60 9,-1.2 -1,-0.3 2,-0.4 10,-0.1 0.423 130.3 66.5 79.7 -2.9 -6.3 -11.6 0.9 67 61 A K T <4 S+ 0 0 134 -3,-2.9 2,-0.3 -6,-0.3 -2,-0.2 0.189 93.6 60.3-131.4 11.7 -6.7 -11.9 4.7 68 62 A V < - 0 0 14 -4,-0.7 7,-2.1 7,-0.3 2,-0.4 -0.983 58.7-164.1-146.5 131.5 -8.7 -8.7 5.3 69 63 A E E -D 74 0B 109 -2,-0.3 2,-0.5 5,-0.2 5,-0.3 -0.957 4.2-169.0-119.6 132.5 -12.1 -7.5 4.0 70 64 A L E > S-D 73 0B 17 3,-3.2 3,-1.7 -2,-0.4 -53,-0.3 -0.977 73.8 -9.2-124.1 125.6 -13.4 -4.0 4.2 71 65 A H T 3 S- 0 0 99 -2,-0.5 -1,-0.1 1,-0.3 3,-0.1 0.804 129.5 -56.9 62.2 29.2 -17.0 -3.0 3.5 72 66 A G T 3 S+ 0 0 56 1,-0.2 2,-0.4 -3,-0.1 -1,-0.3 0.511 120.8 108.5 80.5 3.9 -17.6 -6.5 2.2 73 67 A K E < S-D 70 0B 87 -3,-1.7 -3,-3.2 -58,-0.1 2,-0.3 -0.958 73.8-118.9-119.2 131.0 -14.8 -6.1 -0.3 74 68 A I E -D 69 0B 83 -2,-0.4 2,-0.3 -5,-0.3 -5,-0.2 -0.478 29.5-132.1 -68.0 127.1 -11.4 -7.8 -0.0 75 69 A M - 0 0 2 -7,-2.1 -9,-1.2 -2,-0.3 2,-0.5 -0.621 15.7-149.9 -83.2 137.5 -8.6 -5.3 0.2 76 70 A E E -B 14 0A 53 -62,-2.2 -62,-2.2 -2,-0.3 2,-0.4 -0.925 11.9-172.2-112.3 129.5 -5.5 -5.8 -2.0 77 71 A V E +B 13 0A 1 -2,-0.5 2,-0.3 -64,-0.2 -64,-0.2 -0.976 15.7 149.9-124.0 130.7 -2.0 -4.7 -1.0 78 72 A D E -B 12 0A 84 -66,-2.1 -66,-2.9 -2,-0.4 2,-0.0 -0.991 54.1 -74.0-155.0 155.3 1.0 -4.6 -3.2 79 73 A Y E -B 11 0A 74 -2,-0.3 2,-1.8 -68,-0.2 -68,-0.2 -0.288 50.5-119.3 -53.7 122.7 4.3 -2.8 -3.7 80 74 A S + 0 0 58 -70,-1.8 2,-0.4 -2,-0.0 -70,-0.3 -0.465 55.3 156.7 -68.6 86.2 3.5 0.6 -5.2 81 75 A V + 0 0 122 -2,-1.8 -72,-0.0 1,-0.1 -70,-0.0 -0.907 20.6 161.1-117.7 144.5 5.5 0.2 -8.5 82 76 A S + 0 0 96 -2,-0.4 -1,-0.1 3,-0.0 3,-0.1 0.664 1.6 168.0-122.1 -60.1 5.0 2.0 -11.8 83 77 A K + 0 0 212 1,-0.2 2,-0.5 0, 0.0 -2,-0.0 0.847 35.7 140.6 39.8 43.4 8.2 1.7 -13.9 84 78 A K + 0 0 185 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.935 12.5 137.1-120.8 109.7 6.1 3.0 -16.8 85 79 A L - 0 0 163 -2,-0.5 2,-0.1 -3,-0.1 -3,-0.0 -0.942 49.9-117.2-154.7 128.6 7.6 5.5 -19.2 86 80 A R - 0 0 231 -2,-0.3 2,-0.5 1,-0.1 -2,-0.0 -0.398 28.1-148.4 -66.1 137.1 7.6 5.8 -23.0 87 81 A S - 0 0 101 -2,-0.1 2,-0.5 1,-0.0 -1,-0.1 -0.938 14.5-174.4-114.0 126.0 11.0 5.4 -24.7 88 82 A S + 0 0 136 -2,-0.5 -2,-0.0 2,-0.1 -1,-0.0 -0.733 59.3 34.7-119.8 81.8 11.9 7.3 -27.9 89 83 A G S S- 0 0 54 -2,-0.5 -1,-0.0 2,-0.0 0, 0.0 -0.453 76.1-100.7 144.8 141.5 15.3 6.1 -29.0 90 84 A P - 0 0 139 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 0.099 34.8-125.3 -69.8-172.1 17.5 3.1 -29.2 91 85 A S - 0 0 119 2,-0.0 2,-0.2 0, 0.0 -2,-0.0 -0.978 12.1-148.1-141.3 152.9 20.5 2.3 -26.9 92 86 A S 0 0 126 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.597 360.0 360.0-113.5 176.0 24.2 1.4 -27.3 93 87 A G 0 0 124 -2,-0.2 -1,-0.1 0, 0.0 -2,-0.0 0.084 360.0 360.0 50.8 360.0 26.6 -0.7 -25.3