==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 20-MAY-05 2CQI . COMPND 2 MOLECULE: NUCLEOLYSIN TIAR; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOY . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7600.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 58.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 22.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 12.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 17.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -6 A G 0 0 114 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 94.7 -28.4 17.7 -1.3 2 -5 A S + 0 0 128 2,-0.0 2,-0.3 1,-0.0 0, 0.0 -0.067 360.0 133.5 -38.1 114.6 -27.0 17.8 2.2 3 -4 A S - 0 0 114 2,-0.1 2,-0.7 0, 0.0 -1,-0.0 -0.958 59.7-101.4-158.9 172.6 -29.4 15.6 4.2 4 -3 A G + 0 0 84 -2,-0.3 2,-0.3 3,-0.0 -2,-0.0 -0.845 64.7 114.8-110.7 98.7 -29.5 12.8 6.8 5 -2 A S S S- 0 0 109 -2,-0.7 -2,-0.1 0, 0.0 0, 0.0 -0.971 71.4 -62.7-154.7 165.4 -30.2 9.4 5.2 6 -1 A S - 0 0 112 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.269 59.3-122.1 -54.3 129.3 -28.6 6.0 4.6 7 0 A G - 0 0 72 1,-0.1 2,-0.3 -3,-0.0 -1,-0.1 -0.112 22.3-137.3 -68.6 171.1 -25.5 6.3 2.5 8 1 A M - 0 0 164 2,-0.0 2,-0.4 0, 0.0 -1,-0.1 -0.932 10.1-160.2-132.3 155.7 -25.0 4.6 -0.9 9 2 A M - 0 0 181 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.987 6.5-166.9-140.6 127.8 -22.2 2.7 -2.6 10 3 A E - 0 0 124 -2,-0.4 2,-0.8 0, 0.0 -2,-0.0 -0.755 31.9-102.8-111.8 159.3 -21.7 2.0 -6.3 11 4 A D + 0 0 144 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.715 60.1 136.1 -84.5 110.8 -19.3 -0.4 -8.0 12 5 A D S S- 0 0 119 -2,-0.8 -1,-0.2 0, 0.0 2,-0.0 0.714 74.0 -50.1-117.1 -60.6 -16.5 1.7 -9.6 13 6 A G - 0 0 55 2,-0.0 3,-0.1 0, 0.0 -2,-0.0 -0.211 48.9-133.8 172.9 87.6 -13.1 0.0 -8.9 14 7 A Q - 0 0 97 1,-0.1 2,-0.1 2,-0.1 -3,-0.0 -0.128 37.3-102.4 -49.4 141.1 -11.9 -1.2 -5.6 15 8 A P + 0 0 60 0, 0.0 54,-0.2 0, 0.0 53,-0.1 -0.409 39.1 173.1 -69.8 141.4 -8.3 -0.2 -4.8 16 9 A R + 0 0 98 74,-0.1 46,-2.9 -2,-0.1 2,-0.4 0.182 55.0 82.7-132.3 12.1 -5.5 -2.8 -5.2 17 10 A T E -A 61 0A 48 44,-0.2 73,-1.6 73,-0.2 2,-0.3 -0.966 53.4-170.3-124.6 138.2 -2.5 -0.7 -4.7 18 11 A L E -AB 60 89A 0 42,-1.9 42,-2.3 -2,-0.4 2,-0.6 -0.948 19.3-130.6-127.7 147.8 -0.9 0.4 -1.4 19 12 A Y E -AB 59 88A 77 69,-3.3 69,-1.8 -2,-0.3 2,-0.6 -0.861 18.4-160.0-101.3 121.2 1.9 2.9 -0.6 20 13 A V E +AB 58 87A 0 38,-3.2 38,-2.1 -2,-0.6 2,-0.2 -0.882 18.9 169.0-103.9 120.1 4.7 1.7 1.7 21 14 A G E +AB 57 86A 0 65,-3.1 65,-2.2 -2,-0.6 36,-0.2 -0.755 47.7 46.4-124.3 171.7 6.8 4.4 3.4 22 15 A N S S+ 0 0 36 34,-0.7 2,-0.4 -2,-0.2 -1,-0.2 0.916 71.6 167.7 64.2 44.7 9.4 4.6 6.2 23 16 A L - 0 0 1 33,-1.4 -1,-0.2 -3,-0.2 61,-0.1 -0.761 35.6-116.7 -94.9 135.5 11.4 1.7 4.8 24 17 A S > - 0 0 34 -2,-0.4 3,-1.8 56,-0.3 -1,-0.1 -0.323 25.5-112.8 -67.8 150.0 14.9 1.0 6.1 25 18 A R T 3 S+ 0 0 209 1,-0.3 -1,-0.1 -2,-0.0 -2,-0.0 0.677 120.6 58.6 -56.2 -15.8 17.8 1.2 3.6 26 19 A D T 3 S+ 0 0 105 55,-0.1 -1,-0.3 2,-0.1 55,-0.1 0.758 83.4 101.6 -84.8 -27.7 18.0 -2.5 4.1 27 20 A V < - 0 0 5 -3,-1.8 2,-0.3 53,-0.1 -4,-0.0 -0.258 54.4-171.9 -58.9 142.6 14.5 -3.2 2.9 28 21 A T > - 0 0 63 1,-0.1 4,-2.3 30,-0.0 5,-0.2 -0.860 38.4-106.0-134.0 168.2 14.2 -4.4 -0.7 29 22 A E H > S+ 0 0 78 -2,-0.3 4,-2.1 1,-0.2 5,-0.1 0.902 121.7 47.8 -60.2 -42.8 11.5 -5.1 -3.3 30 23 A V H > S+ 0 0 80 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.892 109.3 53.9 -65.8 -40.7 11.9 -8.9 -2.7 31 24 A L H > S+ 0 0 38 2,-0.2 4,-2.1 1,-0.2 3,-0.3 0.944 109.7 46.5 -59.2 -50.7 11.7 -8.5 1.1 32 25 A I H X S+ 0 0 0 -4,-2.3 4,-3.0 1,-0.2 5,-0.4 0.928 110.6 52.3 -58.1 -48.0 8.5 -6.6 1.0 33 26 A L H X S+ 0 0 37 -4,-2.1 4,-1.8 1,-0.2 -1,-0.2 0.816 108.2 54.2 -58.6 -31.1 6.9 -9.1 -1.5 34 27 A Q H X S+ 0 0 114 -4,-1.6 4,-1.4 -3,-0.3 -1,-0.2 0.950 112.4 40.0 -68.8 -50.9 7.9 -11.8 0.9 35 28 A L H X S+ 0 0 37 -4,-2.1 4,-0.5 1,-0.2 3,-0.3 0.930 121.4 43.2 -64.4 -46.8 6.2 -10.3 4.0 36 29 A F H >X S+ 0 0 0 -4,-3.0 4,-2.4 1,-0.2 3,-1.0 0.834 107.3 61.9 -68.2 -33.1 3.1 -9.2 2.0 37 30 A S H 3< S+ 0 0 63 -4,-1.8 -1,-0.2 -5,-0.4 -2,-0.2 0.861 91.6 66.0 -61.1 -36.5 3.1 -12.5 0.1 38 31 A Q H 3< S+ 0 0 149 -4,-1.4 -1,-0.3 -3,-0.3 -2,-0.2 0.818 111.3 36.1 -55.2 -31.7 2.5 -14.3 3.5 39 32 A I H << S- 0 0 67 -3,-1.0 -2,-0.2 -4,-0.5 -1,-0.2 0.920 132.8 -24.0 -87.0 -53.7 -0.9 -12.6 3.6 40 33 A G S < S- 0 0 6 -4,-2.4 -1,-0.3 27,-0.1 2,-0.2 -0.952 77.2 -68.8-154.0 172.1 -1.9 -12.6 -0.1 41 34 A P - 0 0 65 0, 0.0 22,-1.1 0, 0.0 2,-0.6 -0.470 42.4-144.9 -69.7 132.0 -0.6 -12.7 -3.7 42 35 A C E -C 62 0A 26 -2,-0.2 20,-0.3 20,-0.2 3,-0.1 -0.882 8.3-162.2-103.9 119.0 1.3 -9.6 -4.9 43 36 A K E S- 0 0 108 18,-2.4 2,-0.3 -2,-0.6 19,-0.2 0.943 71.7 -30.5 -61.3 -49.8 0.8 -8.6 -8.5 44 37 A S E -C 61 0A 72 17,-1.0 17,-2.1 2,-0.0 2,-0.4 -0.945 52.8-147.3-170.0 148.4 3.9 -6.4 -8.5 45 38 A C E -C 60 0A 10 -2,-0.3 2,-0.5 15,-0.2 15,-0.2 -0.987 7.7-168.5-128.3 131.0 6.1 -4.3 -6.3 46 39 A K E -C 59 0A 142 13,-1.5 13,-2.4 -2,-0.4 2,-0.6 -0.942 8.9-155.9-122.6 111.0 8.0 -1.1 -7.2 47 40 A M E -C 58 0A 55 -2,-0.5 2,-0.5 11,-0.3 11,-0.3 -0.757 11.0-166.6 -88.5 117.3 10.6 0.3 -4.7 48 41 A I E +C 57 0A 34 9,-2.9 9,-2.3 -2,-0.6 3,-0.1 -0.911 21.0 164.3-108.8 123.2 11.2 4.0 -5.3 49 42 A T + 0 0 87 -2,-0.5 -1,-0.1 7,-0.2 9,-0.1 -0.099 35.9 121.6-125.5 33.8 14.2 5.7 -3.6 50 43 A E + 0 0 154 7,-0.1 2,-0.8 1,-0.1 -1,-0.1 0.908 64.5 68.4 -62.8 -43.5 14.3 8.9 -5.6 51 44 A H + 0 0 92 1,-0.2 -1,-0.1 -3,-0.1 -3,-0.0 -0.708 55.9 170.7 -83.7 110.8 13.9 11.0 -2.5 52 45 A T + 0 0 111 -2,-0.8 -1,-0.2 1,-0.1 -2,-0.1 0.859 68.9 70.2 -85.9 -40.4 17.0 10.7 -0.3 53 46 A S S S+ 0 0 135 2,-0.1 2,-0.2 0, 0.0 -1,-0.1 0.895 109.2 32.9 -42.2 -52.1 16.1 13.4 2.2 54 47 A N S S- 0 0 88 1,-0.2 0, 0.0 -32,-0.0 0, 0.0 -0.625 107.8 -74.4-105.7 166.1 13.3 11.3 3.6 55 48 A D - 0 0 52 -2,-0.2 -33,-0.2 1,-0.1 -1,-0.2 -0.122 57.4-100.7 -55.6 153.4 13.0 7.5 4.0 56 49 A P - 0 0 16 0, 0.0 -33,-1.4 0, 0.0 -34,-0.7 -0.078 34.8-154.1 -69.8 174.1 12.4 5.4 0.8 57 50 A Y E -AC 21 48A 30 -9,-2.3 -9,-2.9 -36,-0.2 2,-0.3 -0.995 7.4-164.0-153.1 150.2 9.0 4.0 -0.3 58 51 A C E -AC 20 47A 0 -38,-2.1 -38,-3.2 -2,-0.3 2,-0.4 -0.950 17.3-127.3-136.1 155.7 7.6 1.2 -2.4 59 52 A F E -AC 19 46A 67 -13,-2.4 -13,-1.5 -2,-0.3 2,-0.5 -0.852 16.1-163.4-106.6 138.9 4.3 0.3 -4.0 60 53 A V E -AC 18 45A 0 -42,-2.3 -42,-1.9 -2,-0.4 2,-0.5 -0.956 3.6-168.4-125.7 114.2 2.5 -3.0 -3.4 61 54 A E E -AC 17 44A 78 -17,-2.1 -18,-2.4 -2,-0.5 -17,-1.0 -0.873 7.4-160.3-104.7 129.7 -0.3 -4.1 -5.8 62 55 A F E - C 0 42A 0 -46,-2.9 -20,-0.2 -2,-0.5 3,-0.0 -0.599 25.8-122.8-103.5 166.0 -2.5 -7.1 -4.9 63 56 A Y S S+ 0 0 117 -22,-1.1 2,-0.3 -2,-0.2 -1,-0.1 0.890 94.9 22.0 -73.5 -41.1 -4.7 -9.3 -7.1 64 57 A E S > S- 0 0 108 -23,-0.3 4,-1.6 1,-0.1 -2,-0.1 -0.794 75.9-119.6-124.3 167.1 -7.9 -8.5 -5.1 65 58 A H H > S+ 0 0 66 -2,-0.3 4,-2.7 2,-0.2 5,-0.2 0.837 110.6 61.9 -73.7 -34.0 -9.1 -5.8 -2.8 66 59 A R H > S+ 0 0 170 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.884 107.6 44.1 -59.1 -40.3 -9.6 -8.2 0.1 67 60 A D H > S+ 0 0 8 2,-0.2 4,-3.3 1,-0.2 5,-0.3 0.928 112.4 50.8 -70.8 -46.9 -5.9 -9.0 0.0 68 61 A A H X S+ 0 0 0 -4,-1.6 4,-2.3 1,-0.2 -2,-0.2 0.902 113.6 45.9 -57.6 -43.4 -4.7 -5.4 -0.3 69 62 A A H X S+ 0 0 33 -4,-2.7 4,-2.2 2,-0.2 5,-0.2 0.909 114.8 47.1 -66.9 -43.3 -6.9 -4.4 2.6 70 63 A A H X S+ 0 0 49 -4,-1.9 4,-2.2 -5,-0.2 -2,-0.2 0.934 118.0 40.9 -64.2 -47.8 -5.8 -7.3 4.8 71 64 A A H X S+ 0 0 0 -4,-3.3 4,-2.9 2,-0.2 5,-0.3 0.840 111.9 58.0 -69.4 -34.2 -2.1 -6.7 4.0 72 65 A L H X S+ 0 0 16 -4,-2.3 4,-1.6 -5,-0.3 -2,-0.2 0.948 112.8 37.6 -61.0 -51.0 -2.5 -3.0 4.3 73 66 A A H < S+ 0 0 67 -4,-2.2 -2,-0.2 2,-0.2 -1,-0.2 0.900 119.0 49.2 -68.0 -42.0 -3.8 -3.2 7.9 74 67 A A H < S+ 0 0 49 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.874 122.3 34.0 -65.3 -38.1 -1.5 -6.0 8.8 75 68 A M H >< S+ 0 0 0 -4,-2.9 3,-2.4 -5,-0.2 2,-0.7 0.617 88.7 118.6 -91.0 -15.8 1.5 -4.1 7.3 76 69 A N T 3< S- 0 0 93 -4,-1.6 10,-0.2 1,-0.3 12,-0.1 -0.346 101.5 -14.4 -56.0 101.7 0.1 -0.7 8.3 77 70 A G T 3 S+ 0 0 24 8,-1.2 -1,-0.3 -2,-0.7 9,-0.2 0.862 99.1 165.1 70.2 36.2 2.8 0.5 10.7 78 71 A R E < -D 85 0B 95 -3,-2.4 7,-3.1 7,-1.0 2,-0.7 -0.479 41.8-109.3 -84.8 156.9 4.4 -2.9 11.0 79 72 A K E +D 84 0B 127 5,-0.3 2,-0.4 -2,-0.1 5,-0.2 -0.776 43.5 168.1 -90.7 116.2 7.9 -3.5 12.4 80 73 A I E > -D 83 0B 10 3,-2.6 3,-1.9 -2,-0.7 -56,-0.3 -0.977 68.1 -14.1-133.4 121.3 10.4 -4.5 9.7 81 74 A L T 3 S- 0 0 83 -2,-0.4 -1,-0.1 1,-0.3 -55,-0.1 0.821 127.3 -56.6 60.5 31.5 14.2 -4.7 10.2 82 75 A G T 3 S+ 0 0 66 1,-0.2 2,-0.5 -58,-0.0 -1,-0.3 0.497 122.9 104.8 79.2 2.6 13.8 -2.7 13.4 83 76 A K E < S-D 80 0B 59 -3,-1.9 -3,-2.6 -59,-0.0 2,-0.5 -0.972 71.4-129.2-122.1 126.8 12.0 0.0 11.4 84 77 A E E -D 79 0B 101 -2,-0.5 2,-0.4 -5,-0.2 -5,-0.3 -0.602 24.8-152.7 -75.6 120.0 8.2 0.7 11.5 85 78 A V E -D 78 0B 0 -7,-3.1 -8,-1.2 -2,-0.5 -7,-1.0 -0.774 4.7-139.9 -97.2 137.4 6.9 0.8 7.9 86 79 A K E -B 21 0A 98 -65,-2.2 -65,-3.1 -2,-0.4 2,-0.5 -0.825 16.9-170.5 -99.1 130.4 3.7 2.8 7.1 87 80 A V E +B 20 0A 2 -2,-0.5 2,-0.3 -67,-0.2 -67,-0.2 -0.977 13.7 158.9-124.6 124.9 1.2 1.4 4.7 88 81 A N E -B 19 0A 103 -69,-1.8 -69,-3.3 -2,-0.5 2,-0.3 -0.932 49.5 -78.7-139.6 162.4 -1.8 3.4 3.3 89 82 A W E -B 18 0A 67 -2,-0.3 2,-1.4 -71,-0.2 -71,-0.2 -0.458 44.2-129.7 -64.7 119.9 -4.1 3.3 0.3 90 83 A A - 0 0 28 -73,-1.6 -73,-0.2 -2,-0.3 -74,-0.1 -0.573 29.5-158.9 -75.0 93.4 -2.4 4.7 -2.7 91 84 A T - 0 0 131 -2,-1.4 -3,-0.0 -76,-0.1 -73,-0.0 -0.365 6.8-162.7 -72.8 152.7 -4.9 7.2 -4.0 92 85 A T > - 0 0 92 -2,-0.1 3,-0.7 1,-0.1 -1,-0.0 -0.987 29.4-131.1-139.8 148.4 -4.8 8.4 -7.6 93 86 A P T 3 S+ 0 0 126 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.648 86.6 98.4 -69.8 -15.2 -6.2 11.4 -9.5 94 87 A S T 3 + 0 0 105 2,-0.0 -3,-0.0 -3,-0.0 0, 0.0 0.881 64.2 84.3 -37.6 -55.3 -7.5 8.9 -12.2 95 88 A S < - 0 0 79 -3,-0.7 3,-0.0 1,-0.1 0, 0.0 -0.221 60.3-168.7 -54.2 138.0 -10.9 9.0 -10.6 96 89 A Q + 0 0 168 1,-0.0 2,-0.4 2,-0.0 -1,-0.1 0.832 63.3 83.9 -96.9 -43.6 -13.1 11.9 -11.8 97 90 A K + 0 0 130 2,-0.0 2,-0.4 1,-0.0 -2,-0.0 -0.489 59.3 176.1 -66.6 117.9 -15.9 11.8 -9.3 98 91 A S + 0 0 111 -2,-0.4 -2,-0.0 2,-0.0 -1,-0.0 -0.990 15.7 149.8-130.3 130.2 -14.9 13.6 -6.2 99 92 A G - 0 0 73 -2,-0.4 -2,-0.0 2,-0.0 -1,-0.0 -0.495 18.4-174.3-161.2 83.5 -17.0 14.3 -3.1 100 93 A P - 0 0 129 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.018 22.6-114.1 -69.8 179.0 -15.4 14.6 0.4 101 94 A S - 0 0 123 2,-0.0 2,-0.4 0, 0.0 -2,-0.0 -0.571 16.5-125.4-111.5 176.2 -17.2 15.0 3.7 102 95 A S 0 0 125 -2,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.988 360.0 360.0-129.0 130.6 -17.4 17.7 6.3 103 96 A G 0 0 125 -2,-0.4 -2,-0.0 0, 0.0 0, 0.0 -0.937 360.0 360.0-134.3 360.0 -16.6 17.4 10.0