==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 20-MAY-05 2CQJ . COMPND 2 MOLECULE: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5365.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 56.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 14.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 19.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 102 A G 0 0 133 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 51.8 6.5 22.0 -10.8 2 103 A S - 0 0 122 0, 0.0 2,-0.6 0, 0.0 0, 0.0 -0.740 360.0 -91.0-121.7 170.3 8.7 22.7 -7.8 3 104 A S S S+ 0 0 131 -2,-0.2 2,-0.2 1,-0.1 0, 0.0 -0.725 79.6 84.5 -86.1 118.9 11.2 20.7 -5.7 4 105 A G S S- 0 0 67 -2,-0.6 2,-0.4 2,-0.0 -1,-0.1 -0.597 80.4 -44.3-169.0-127.0 9.7 19.0 -2.8 5 106 A S - 0 0 127 -2,-0.2 2,-0.8 2,-0.0 -2,-0.0 -0.970 33.3-163.3-139.6 121.4 7.8 15.7 -2.0 6 107 A S + 0 0 94 -2,-0.4 45,-0.5 42,-0.0 2,-0.2 -0.806 24.8 168.2-106.4 92.8 5.0 14.2 -4.0 7 108 A G E -A 50 0A 33 -2,-0.8 2,-0.3 43,-0.1 43,-0.2 -0.687 14.8-161.5-104.5 158.6 3.3 11.6 -1.9 8 109 A R E -A 49 0A 147 41,-1.8 41,-2.4 -2,-0.2 -2,-0.0 -0.932 32.8 -83.3-136.1 159.2 -0.0 9.8 -2.4 9 110 A R E >> -A 48 0A 97 -2,-0.3 4,-2.0 39,-0.2 3,-0.5 -0.317 34.1-127.9 -61.8 140.4 -2.5 7.8 -0.3 10 111 A L H 3> S+ 0 0 0 37,-1.5 4,-2.5 35,-1.2 5,-0.2 0.891 108.6 60.3 -55.5 -41.5 -1.6 4.2 0.4 11 112 A P H 3> S+ 0 0 0 0, 0.0 4,-1.9 0, 0.0 -1,-0.2 0.881 106.6 45.6 -54.3 -42.4 -5.1 3.2 -0.9 12 113 A T H <> S+ 0 0 55 -3,-0.5 4,-2.1 33,-0.2 -2,-0.2 0.914 112.1 50.2 -69.4 -44.1 -4.4 4.7 -4.3 13 114 A V H X S+ 0 0 5 -4,-2.0 4,-1.9 1,-0.2 6,-0.2 0.850 110.8 51.1 -62.9 -35.0 -0.9 3.2 -4.6 14 115 A L H <>S+ 0 0 1 -4,-2.5 5,-3.2 2,-0.2 6,-0.8 0.922 108.8 49.4 -68.8 -45.5 -2.4 -0.2 -3.7 15 116 A L H ><5S+ 0 0 56 -4,-1.9 3,-1.2 1,-0.2 -2,-0.2 0.892 112.3 48.8 -60.9 -40.9 -5.1 -0.1 -6.3 16 117 A K H 3<5S+ 0 0 122 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.886 109.0 52.2 -66.7 -39.8 -2.5 0.9 -9.0 17 118 A L T 3<5S- 0 0 61 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.174 115.0-117.9 -82.7 19.2 -0.2 -1.9 -8.0 18 119 A R T < 5S+ 0 0 197 -3,-1.2 -3,-0.2 1,-0.1 -2,-0.1 0.790 79.8 129.5 48.7 29.4 -3.2 -4.3 -8.3 19 120 A M < + 0 0 49 -5,-3.2 2,-0.2 -6,-0.2 -4,-0.2 0.793 68.1 30.5 -81.4 -30.4 -2.7 -4.9 -4.6 20 121 A A S S- 0 0 8 -6,-0.8 3,-0.1 1,-0.1 -2,-0.0 -0.738 71.1-132.0-123.4 172.2 -6.3 -4.3 -3.8 21 122 A Q S S- 0 0 167 1,-0.3 2,-0.2 -2,-0.2 -1,-0.1 0.940 81.1 -3.6 -87.5 -65.9 -9.7 -4.8 -5.5 22 123 A H S > S- 0 0 103 1,-0.1 4,-2.6 0, 0.0 -1,-0.3 -0.776 76.0 -97.5-125.8 170.6 -11.5 -1.5 -5.0 23 124 A L H > S+ 0 0 87 1,-0.3 4,-2.6 -2,-0.2 5,-0.2 0.906 125.7 50.2 -52.9 -45.5 -11.0 1.8 -3.1 24 125 A Q H > S+ 0 0 120 1,-0.2 4,-2.4 2,-0.2 -1,-0.3 0.857 110.1 51.4 -62.5 -35.9 -13.0 0.5 -0.2 25 126 A A H > S+ 0 0 8 -3,-0.2 4,-2.2 2,-0.2 -2,-0.2 0.925 111.7 45.1 -67.3 -46.2 -11.0 -2.7 -0.2 26 127 A A H X S+ 0 0 0 -4,-2.6 4,-1.9 2,-0.2 -2,-0.2 0.905 115.1 48.2 -64.5 -42.8 -7.7 -0.9 -0.1 27 128 A V H X S+ 0 0 28 -4,-2.6 4,-1.9 -5,-0.2 -2,-0.2 0.926 111.8 48.9 -64.0 -46.4 -8.9 1.5 2.6 28 129 A A H X S+ 0 0 19 -4,-2.4 4,-1.9 1,-0.2 -2,-0.2 0.909 109.3 52.9 -60.1 -44.2 -10.3 -1.2 4.8 29 130 A F H <>S+ 0 0 67 -4,-2.2 5,-2.7 1,-0.2 6,-0.4 0.909 108.1 50.7 -58.6 -44.1 -7.1 -3.3 4.5 30 131 A V H ><5S+ 0 0 0 -4,-1.9 3,-1.2 1,-0.2 -1,-0.2 0.876 109.9 50.3 -62.2 -38.6 -5.0 -0.3 5.7 31 132 A E H 3<5S+ 0 0 127 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.833 108.7 52.0 -68.9 -33.0 -7.3 0.2 8.6 32 133 A Q T 3<5S- 0 0 126 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.242 117.7-114.5 -87.1 13.3 -7.0 -3.5 9.6 33 134 A G T < 5S+ 0 0 18 -3,-1.2 -3,-0.2 10,-0.3 -2,-0.1 0.912 75.9 133.7 54.5 46.4 -3.3 -3.1 9.4 34 135 A H < + 0 0 54 -5,-2.7 26,-1.7 1,-0.1 27,-0.5 0.724 61.2 50.4 -95.2 -27.7 -3.0 -5.5 6.5 35 136 A V E -B 59 0B 0 -6,-0.4 7,-0.3 7,-0.3 2,-0.3 -0.917 66.0-175.7-116.4 140.4 -0.6 -3.3 4.4 36 137 A R E -B 58 0B 83 22,-2.7 22,-2.0 -2,-0.4 2,-0.5 -0.914 19.7-136.0-131.9 158.3 2.6 -1.8 5.6 37 138 A V E > -BC 57 40B 0 3,-1.9 3,-1.8 -2,-0.3 20,-0.2 -0.938 59.3 -59.5-120.0 111.2 5.3 0.6 4.1 38 139 A G T 3 S- 0 0 12 18,-3.2 20,-0.1 -2,-0.5 -1,-0.1 -0.148 113.0 -18.6 55.4-148.9 8.9 -0.3 4.6 39 140 A P T 3 S+ 0 0 118 0, 0.0 2,-0.5 0, 0.0 -1,-0.3 0.422 129.7 77.2 -69.7 3.4 10.2 -0.5 8.2 40 141 A D B < S-C 37 0B 94 -3,-1.8 -3,-1.9 2,-0.0 2,-0.5 -0.970 74.4-144.2-121.5 125.8 7.1 1.5 9.2 41 142 A V - 0 0 73 -2,-0.5 2,-0.4 -5,-0.2 -5,-0.2 -0.767 14.7-152.7 -91.0 123.5 3.6 -0.1 9.5 42 143 A V + 0 0 13 -2,-0.5 -7,-0.3 -7,-0.3 -8,-0.1 -0.779 21.2 174.1 -98.1 138.1 0.7 2.2 8.4 43 144 A T + 0 0 91 -2,-0.4 -10,-0.3 -10,-0.1 -1,-0.1 0.610 63.5 71.3-112.0 -22.5 -2.8 1.8 9.8 44 145 A D > - 0 0 93 1,-0.1 3,-1.1 -12,-0.1 -34,-0.2 -0.805 67.6-147.1-101.6 138.4 -4.4 4.8 8.2 45 146 A P T 3 S+ 0 0 15 0, 0.0 -35,-1.2 0, 0.0 -33,-0.2 0.813 95.4 71.7 -69.8 -31.5 -5.2 5.1 4.4 46 147 A A T 3 S+ 0 0 60 -37,-0.2 2,-0.1 -36,-0.1 -19,-0.0 0.597 72.0 125.9 -61.3 -8.8 -4.6 8.8 4.4 47 148 A F < - 0 0 69 -3,-1.1 -37,-1.5 1,-0.1 2,-0.3 -0.308 59.4-135.2 -55.8 126.0 -0.9 7.8 4.8 48 149 A L E -A 9 0A 109 -39,-0.2 2,-0.4 -41,-0.1 -39,-0.2 -0.677 20.8-166.5 -88.5 138.3 1.1 9.5 2.0 49 150 A V E -A 8 0A 3 -41,-2.4 -41,-1.8 -2,-0.3 2,-0.3 -0.963 10.6-138.9-127.3 143.1 3.7 7.4 0.2 50 151 A T E >> -A 7 0A 55 -2,-0.4 4,-2.9 -43,-0.2 3,-1.2 -0.715 32.6-106.5-100.1 150.4 6.6 8.5 -2.1 51 152 A R H 3> S+ 0 0 185 -45,-0.5 4,-1.0 -2,-0.3 -1,-0.1 0.829 124.2 54.6 -38.4 -41.0 7.6 6.7 -5.4 52 153 A S H 34 S+ 0 0 84 1,-0.2 4,-0.4 2,-0.2 3,-0.4 0.916 112.4 40.7 -62.5 -44.7 10.6 5.5 -3.4 53 154 A M H X4 S+ 0 0 54 -3,-1.2 3,-1.4 1,-0.2 -2,-0.2 0.813 99.6 75.9 -73.3 -31.3 8.4 4.0 -0.7 54 155 A E H >< S+ 0 0 34 -4,-2.9 3,-0.9 1,-0.3 -1,-0.2 0.873 97.3 47.2 -46.8 -42.9 6.0 2.7 -3.2 55 156 A D T 3< S+ 0 0 133 -4,-1.0 -1,-0.3 -3,-0.4 -2,-0.2 0.735 104.4 62.7 -72.4 -22.7 8.5 -0.0 -4.0 56 157 A F T < S+ 0 0 137 -3,-1.4 -18,-3.2 -4,-0.4 2,-0.6 -0.071 77.2 124.7 -93.1 33.3 8.9 -0.7 -0.3 57 158 A V E < +B 37 0B 21 -3,-0.9 2,-0.3 -20,-0.2 -20,-0.2 -0.849 30.6 158.4 -99.6 121.5 5.3 -1.7 0.0 58 159 A T E -B 36 0B 66 -22,-2.0 -22,-2.7 -2,-0.6 2,-0.4 -0.953 42.2-102.6-139.5 158.1 4.6 -5.1 1.5 59 160 A W E -B 35 0B 48 -2,-0.3 3,-0.5 -24,-0.2 -24,-0.3 -0.662 27.1-128.5 -84.0 132.0 1.7 -6.9 3.3 60 161 A V S S+ 0 0 52 -26,-1.7 2,-0.4 -2,-0.4 -1,-0.1 0.889 102.5 16.5 -41.4 -51.7 2.0 -7.3 7.0 61 162 A D + 0 0 98 -27,-0.5 3,-0.3 1,-0.1 -1,-0.3 -0.862 63.9 164.5-131.9 98.8 1.3 -11.0 6.7 62 163 A S + 0 0 60 -3,-0.5 -1,-0.1 -2,-0.4 -2,-0.1 -0.105 38.3 121.8-102.6 34.0 1.8 -12.5 3.3 63 164 A S S S+ 0 0 123 1,-0.2 -1,-0.2 3,-0.0 -2,-0.0 0.951 82.0 35.6 -60.2 -52.1 1.9 -16.1 4.6 64 165 A K S S+ 0 0 188 -3,-0.3 -1,-0.2 2,-0.1 -2,-0.1 0.927 94.3 104.2 -68.4 -46.2 -1.0 -17.2 2.5 65 166 A I S S- 0 0 95 -4,-0.2 2,-0.1 1,-0.1 -3,-0.0 -0.041 71.9-130.1 -39.1 130.4 -0.1 -15.0 -0.5 66 167 A S + 0 0 114 2,-0.0 -1,-0.1 1,-0.0 -2,-0.1 -0.326 48.2 131.6 -83.1 168.5 1.4 -17.2 -3.2 67 168 A G - 0 0 55 -2,-0.1 -2,-0.0 3,-0.0 -1,-0.0 0.264 24.7-175.0 144.2 81.8 4.6 -16.5 -5.0 68 169 A P + 0 0 137 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 0.603 66.3 94.3 -69.7 -11.2 7.4 -19.1 -5.5 69 170 A S - 0 0 110 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.521 59.4-162.5 -83.8 151.0 9.5 -16.4 -7.1 70 171 A S 0 0 122 -2,-0.2 -3,-0.0 1,-0.1 0, 0.0 -0.999 360.0 360.0-137.9 135.8 12.1 -14.5 -5.1 71 172 A G 0 0 132 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.0 0.500 360.0 360.0 142.4 360.0 13.8 -11.2 -5.8