==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION 20-MAY-05 2CQL . COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L9; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7587.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 62.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 23.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 19.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -6 A G 0 0 125 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -98.1 6.7 15.8 -22.2 2 -5 A S - 0 0 136 1,-0.1 2,-0.3 2,-0.0 0, 0.0 0.046 360.0-173.7 -39.4 148.3 7.4 17.2 -18.7 3 -4 A S + 0 0 120 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.953 16.5 138.6-155.0 131.4 4.2 18.3 -16.8 4 -3 A G + 0 0 76 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.852 11.8 171.4-174.5 136.1 3.6 20.0 -13.5 5 -2 A S - 0 0 103 -2,-0.3 2,-0.0 2,-0.0 -2,-0.0 -0.958 36.8-109.8-154.1 131.6 1.4 22.7 -12.0 6 -1 A S S S+ 0 0 131 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.339 78.0 61.1 -61.2 135.1 0.9 23.9 -8.4 7 0 A G S S- 0 0 65 -2,-0.0 2,-0.3 2,-0.0 -2,-0.0 -0.999 81.1 -72.4 150.4-149.0 -2.6 23.0 -7.1 8 1 A M + 0 0 162 -2,-0.3 2,-0.4 62,-0.1 62,-0.1 -0.957 34.7 174.6-154.3 131.7 -4.7 19.9 -6.4 9 2 A K - 0 0 145 -2,-0.3 2,-2.3 60,-0.1 -2,-0.0 -0.985 37.3-120.7-142.7 128.9 -6.5 17.4 -8.5 10 3 A T - 0 0 109 -2,-0.4 2,-1.3 1,-0.1 59,-0.1 -0.426 34.9-170.2 -67.8 80.4 -8.3 14.2 -7.6 11 4 A I - 0 0 88 -2,-2.3 2,-0.6 58,-0.9 58,-0.4 -0.620 15.6-143.1 -78.6 95.4 -6.1 11.9 -9.6 12 5 A L + 0 0 126 -2,-1.3 2,-0.3 56,-0.1 -1,-0.1 -0.445 43.8 142.2 -62.6 107.3 -8.0 8.6 -9.4 13 6 A S - 0 0 54 -2,-0.6 2,-0.2 53,-0.2 53,-0.2 -0.791 22.5-179.3-154.9 105.4 -5.3 5.9 -9.2 14 7 A N - 0 0 74 -2,-0.3 2,-0.3 51,-0.1 51,-0.2 -0.682 21.2-127.3-104.7 159.6 -5.5 2.8 -7.1 15 8 A Q E -A 64 0A 40 49,-2.4 49,-2.0 -2,-0.2 2,-0.4 -0.806 14.4-148.2-107.7 148.1 -2.9 0.0 -6.7 16 9 A T E -A 63 0A 72 -2,-0.3 2,-0.4 47,-0.2 47,-0.2 -0.944 6.7-156.4-118.7 136.3 -3.4 -3.7 -7.1 17 10 A V E -A 62 0A 3 45,-2.8 45,-1.2 -2,-0.4 2,-0.4 -0.880 6.2-147.5-112.7 142.8 -1.7 -6.5 -5.2 18 11 A D - 0 0 91 -2,-0.4 43,-0.2 43,-0.2 42,-0.1 -0.853 10.8-167.0-110.0 144.0 -1.2 -10.1 -6.3 19 12 A I - 0 0 2 -2,-0.4 41,-0.2 41,-0.3 66,-0.0 -0.991 13.7-133.0-133.4 138.4 -1.1 -13.2 -4.1 20 13 A P - 0 0 49 0, 0.0 40,-0.2 0, 0.0 -1,-0.1 0.184 25.8-111.4 -69.7-165.6 -0.0 -16.8 -4.8 21 14 A E S S+ 0 0 166 1,-0.1 -2,-0.0 38,-0.1 38,-0.0 0.609 109.1 67.0-105.8 -20.1 -1.9 -20.0 -3.9 22 15 A N S S+ 0 0 108 2,-0.0 2,-0.4 14,-0.0 -1,-0.1 0.315 98.5 66.7 -83.2 9.1 0.6 -21.2 -1.3 23 16 A V - 0 0 7 13,-0.1 2,-0.5 14,-0.1 13,-0.2 -0.995 67.8-153.2-134.7 137.8 -0.4 -18.2 0.9 24 17 A D E -C 35 0B 113 11,-2.2 11,-2.7 -2,-0.4 2,-0.4 -0.940 11.7-173.2-114.0 125.8 -3.6 -17.4 2.6 25 18 A I E -C 34 0B 20 -2,-0.5 2,-0.5 9,-0.2 9,-0.2 -0.969 7.4-158.7-121.6 128.8 -4.6 -13.8 3.4 26 19 A T E -C 33 0B 72 7,-1.7 7,-2.3 -2,-0.4 2,-0.6 -0.915 5.8-154.8-109.5 124.4 -7.6 -12.7 5.4 27 20 A L E +C 32 0B 51 -2,-0.5 2,-0.4 5,-0.2 5,-0.2 -0.860 15.8 174.2-101.1 122.8 -9.1 -9.2 5.0 28 21 A K E > -C 31 0B 144 3,-2.3 3,-2.2 -2,-0.6 2,-0.9 -0.881 59.5 -65.9-131.5 101.4 -11.0 -7.7 8.0 29 22 A G T 3 S- 0 0 80 -2,-0.4 23,-0.0 1,-0.3 -2,-0.0 -0.433 119.9 -14.3 62.5-102.0 -12.1 -4.1 7.8 30 23 A R T 3 S+ 0 0 92 -2,-0.9 15,-2.3 -3,-0.0 2,-0.5 0.090 117.3 97.5-119.6 19.6 -8.9 -2.2 7.7 31 24 A T E < -CD 28 44B 35 -3,-2.2 -3,-2.3 13,-0.2 2,-0.6 -0.943 57.5-154.2-115.6 128.8 -6.6 -5.1 8.9 32 25 A V E -CD 27 43B 5 11,-2.6 11,-3.0 -2,-0.5 2,-0.5 -0.889 11.1-168.3-105.1 116.2 -4.6 -7.2 6.5 33 26 A I E -CD 26 42B 18 -7,-2.3 -7,-1.7 -2,-0.6 2,-0.4 -0.885 0.8-167.9-106.9 130.8 -3.7 -10.7 7.7 34 27 A V E -CD 25 41B 0 7,-2.9 7,-2.1 -2,-0.5 2,-0.4 -0.962 1.9-169.4-120.9 132.9 -1.2 -12.9 5.9 35 28 A K E +CD 24 40B 120 -11,-2.7 -11,-2.2 -2,-0.4 5,-0.2 -0.977 12.2 169.0-124.0 128.5 -0.6 -16.6 6.5 36 29 A G E > - D 0 39B 14 3,-2.7 3,-1.2 -2,-0.4 56,-0.2 -0.901 48.7-109.1-135.2 164.0 2.3 -18.6 5.1 37 30 A P T 3 S+ 0 0 77 0, 0.0 55,-0.2 0, 0.0 3,-0.1 0.446 121.6 47.9 -69.8 1.5 4.0 -22.0 5.5 38 31 A R T 3 S- 0 0 151 53,-2.1 2,-0.3 1,-0.5 54,-0.2 0.460 128.2 -48.6-117.6 -9.8 6.9 -20.2 7.2 39 32 A G E < -D 36 0B 30 -3,-1.2 -3,-2.7 52,-0.5 -1,-0.5 -0.928 54.2 -89.7 159.7 177.6 4.8 -18.1 9.6 40 33 A T E +D 35 0B 58 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.978 34.9 176.2-125.7 124.2 1.9 -15.7 10.1 41 34 A L E +D 34 0B 71 -7,-2.1 -7,-2.9 -2,-0.5 2,-0.3 -0.986 1.6 178.5-129.3 136.5 2.1 -11.9 9.8 42 35 A R E -D 33 0B 150 -2,-0.4 2,-0.4 -9,-0.3 -9,-0.3 -0.953 9.2-159.9-135.3 154.3 -0.7 -9.3 10.0 43 36 A R E -D 32 0B 135 -11,-3.0 -11,-2.6 -2,-0.3 2,-0.5 -0.992 7.6-147.9-136.9 143.1 -0.9 -5.6 9.9 44 37 A D E +D 31 0B 68 -2,-0.4 -13,-0.2 -13,-0.2 3,-0.1 -0.943 14.4 177.0-114.7 126.4 -3.5 -3.0 11.1 45 38 A F + 0 0 18 -15,-2.3 5,-0.3 -2,-0.5 -14,-0.1 -0.186 47.6 112.6-117.5 39.0 -4.1 0.2 9.2 46 39 A N + 0 0 87 1,-0.2 -1,-0.1 3,-0.1 4,-0.1 0.977 66.6 61.6 -73.6 -59.5 -7.0 1.5 11.4 47 40 A H S S+ 0 0 144 -3,-0.1 2,-0.5 2,-0.1 -1,-0.2 0.745 103.7 67.1 -38.9 -26.2 -5.3 4.5 13.0 48 41 A I S S- 0 0 73 -18,-0.1 2,-0.9 -4,-0.0 -3,-0.0 -0.868 82.0-140.1-105.1 132.4 -5.0 5.6 9.3 49 42 A N + 0 0 84 -2,-0.5 18,-0.3 2,-0.0 2,-0.2 -0.787 45.9 135.5 -93.8 104.1 -8.1 6.5 7.3 50 43 A V - 0 0 11 -2,-0.9 2,-0.4 -5,-0.3 16,-0.2 -0.729 50.9 -99.9-135.0-176.0 -7.7 5.2 3.8 51 44 A E E +B 65 0A 87 14,-1.7 14,-2.8 -2,-0.2 2,-0.3 -0.923 36.5 171.8-115.9 138.0 -9.7 3.4 1.1 52 45 A L E -B 64 0A 51 -2,-0.4 2,-0.3 12,-0.2 12,-0.2 -0.958 9.4-170.1-141.3 158.3 -9.4 -0.4 0.3 53 46 A S E -B 63 0A 42 10,-2.1 10,-2.6 -2,-0.3 2,-0.5 -0.997 22.5-123.5-150.6 147.7 -11.2 -2.9 -1.9 54 47 A L E -B 62 0A 113 -2,-0.3 2,-0.4 8,-0.2 8,-0.2 -0.823 29.6-177.2 -97.0 124.8 -11.2 -6.7 -2.4 55 48 A L E +B 61 0A 52 6,-2.0 6,-2.4 -2,-0.5 -38,-0.1 -0.964 19.4 156.9-124.0 138.4 -10.4 -8.0 -5.8 56 49 A G + 0 0 54 -2,-0.4 4,-0.1 4,-0.2 -1,-0.1 -0.127 18.8 140.7-152.8 46.8 -10.4 -11.6 -7.0 57 50 A K S S- 0 0 193 2,-0.2 3,-0.1 1,-0.1 -1,-0.0 0.889 98.8 -12.5 -58.4 -40.9 -10.9 -11.7 -10.8 58 51 A K S S+ 0 0 184 1,-0.5 2,-0.3 -3,-0.0 -1,-0.1 0.609 136.3 7.5-127.8 -45.0 -8.4 -14.5 -11.1 59 52 A K S S- 0 0 80 -4,-0.0 2,-1.1 -38,-0.0 -1,-0.5 -0.914 96.4 -67.2-139.8 165.7 -6.6 -14.8 -7.8 60 53 A K + 0 0 62 -2,-0.3 2,-0.4 -40,-0.2 -41,-0.3 -0.344 66.6 171.5 -56.5 93.8 -6.7 -13.3 -4.3 61 54 A R E - B 0 55A 80 -6,-2.4 -6,-2.0 -2,-1.1 2,-0.4 -0.858 23.3-147.3-111.8 145.6 -5.8 -9.7 -5.1 62 55 A L E -AB 17 54A 8 -45,-1.2 -45,-2.8 -2,-0.4 2,-0.6 -0.933 5.3-149.4-115.0 133.2 -5.9 -6.7 -2.8 63 56 A R E -AB 16 53A 71 -10,-2.6 -10,-2.1 -2,-0.4 2,-0.5 -0.886 10.4-160.7-104.6 118.9 -6.7 -3.2 -3.9 64 57 A V E +AB 15 52A 3 -49,-2.0 -49,-2.4 -2,-0.6 2,-0.3 -0.861 15.3 172.6-102.0 126.3 -5.0 -0.4 -1.9 65 58 A D E - B 0 51A 9 -14,-2.8 -14,-1.7 -2,-0.5 2,-0.3 -0.944 5.9-179.6-131.9 153.0 -6.5 3.1 -2.1 66 59 A K - 0 0 21 -2,-0.3 -53,-0.2 -16,-0.2 -16,-0.1 -0.910 52.8 -44.7-144.1 170.0 -5.8 6.4 -0.3 67 60 A W - 0 0 169 -18,-0.3 2,-0.3 -2,-0.3 6,-0.2 -0.104 66.3-129.9 -39.8 100.4 -7.0 10.0 -0.2 68 61 A W S S+ 0 0 128 1,-0.1 2,-0.1 -58,-0.1 -56,-0.1 -0.421 71.6 75.9 -61.9 118.4 -7.3 10.7 -4.0 69 62 A G S S+ 0 0 15 1,-0.6 -58,-0.9 -58,-0.4 -1,-0.1 -0.503 77.7 26.4-177.5-107.9 -5.4 13.9 -4.7 70 63 A N S > S- 0 0 105 -3,-0.1 3,-0.8 -2,-0.1 -1,-0.6 0.039 90.6 -86.6 -70.7-174.5 -1.7 14.8 -4.9 71 64 A R T >> S+ 0 0 214 1,-0.2 3,-1.3 2,-0.1 4,-0.6 0.176 98.5 108.9 -82.0 19.1 1.0 12.3 -5.8 72 65 A K H >> + 0 0 116 1,-0.3 4,-2.3 2,-0.2 3,-0.7 0.825 62.8 70.8 -63.9 -31.8 1.2 11.3 -2.1 73 66 A E H <> S+ 0 0 30 -3,-0.8 4,-2.8 1,-0.2 -1,-0.3 0.755 88.4 66.8 -56.7 -24.0 -0.4 8.0 -2.9 74 67 A L H <> S+ 0 0 91 -3,-1.3 4,-1.8 2,-0.2 -1,-0.2 0.946 107.7 34.9 -63.0 -50.1 3.0 7.2 -4.6 75 68 A A H S+ 0 0 127 -4,-2.2 4,-1.9 1,-0.2 5,-0.9 0.845 113.4 49.8 -62.4 -34.3 8.0 -13.2 1.1 90 83 A G H <5S+ 0 0 7 -4,-1.8 4,-0.2 3,-0.2 -1,-0.2 0.847 114.6 42.3 -73.7 -34.7 8.7 -13.6 4.8 91 84 A V H <5S+ 0 0 1 -4,-2.2 -53,-2.1 1,-0.2 -52,-0.5 0.552 124.1 39.0 -87.2 -9.3 6.0 -16.2 5.4 92 85 A T H <5S+ 0 0 30 -4,-1.2 -2,-0.2 -5,-0.2 -3,-0.2 0.571 134.9 18.9-112.1 -18.5 6.9 -18.0 2.2 93 86 A L T <5S- 0 0 103 -4,-1.9 -3,-0.2 -5,-0.2 -2,-0.1 0.689 105.4-109.4-118.6 -44.7 10.7 -17.6 2.4 94 87 A G S