==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 20-MAY-05 2CQP . COMPND 2 MOLECULE: RNA-BINDING PROTEIN 12; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7413.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 57.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 20.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 911 A G 0 0 129 0, 0.0 2,-0.9 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-134.9 2.9 -18.7 2.1 2 912 A S - 0 0 124 1,-0.1 2,-0.9 2,-0.0 0, 0.0 -0.575 360.0-139.5 -72.9 103.8 5.7 -16.6 3.8 3 913 A S - 0 0 124 -2,-0.9 2,-0.5 1,-0.0 -1,-0.1 -0.511 23.4-166.7 -68.0 102.6 4.8 -16.9 7.5 4 914 A G - 0 0 63 -2,-0.9 2,-0.3 1,-0.0 -1,-0.0 -0.815 13.9-133.8 -98.3 129.5 5.5 -13.3 8.7 5 915 A S + 0 0 126 -2,-0.5 2,-0.3 1,-0.0 -2,-0.0 -0.612 30.8 174.4 -81.9 135.7 5.8 -12.6 12.4 6 916 A S - 0 0 126 -2,-0.3 3,-0.0 1,-0.1 -1,-0.0 -0.810 22.9-173.7-133.3 173.6 3.9 -9.6 13.8 7 917 A G - 0 0 78 -2,-0.3 2,-0.3 1,-0.0 -1,-0.1 0.546 66.0 -17.1-131.7 -67.8 3.0 -8.0 17.1 8 918 A A + 0 0 106 2,-0.0 2,-0.3 0, 0.0 -1,-0.0 -0.914 55.7 162.6-155.3 123.8 0.6 -5.0 17.0 9 919 A S + 0 0 127 -2,-0.3 2,-0.4 -3,-0.0 -3,-0.0 -0.917 6.9 167.2-147.4 116.2 -0.5 -2.8 14.1 10 920 A S - 0 0 110 -2,-0.3 -2,-0.0 1,-0.0 0, 0.0 -0.971 32.5-113.8-131.1 145.1 -3.6 -0.5 14.0 11 921 A G - 0 0 76 -2,-0.4 82,-0.0 1,-0.0 -2,-0.0 -0.214 29.7-161.3 -71.3 165.0 -4.7 2.2 11.7 12 922 A K - 0 0 181 1,-0.1 81,-0.1 2,-0.0 -1,-0.0 -0.993 16.0-112.5-148.8 152.5 -4.9 5.9 12.7 13 923 A P + 0 0 121 0, 0.0 -1,-0.1 0, 0.0 80,-0.0 0.118 64.9 78.5 -69.7-170.6 -6.6 9.1 11.4 14 924 A G S S- 0 0 63 51,-0.0 3,-0.1 2,-0.0 -2,-0.0 -0.749 83.3 -7.1 109.0-156.4 -4.8 12.2 10.0 15 925 A P S S- 0 0 72 0, 0.0 2,-0.6 0, 0.0 50,-0.2 -0.047 80.8 -85.4 -69.8 176.6 -3.4 12.9 6.6 16 926 A T E -A 64 0A 7 48,-2.4 48,-1.3 76,-0.1 2,-0.5 -0.787 40.3-156.0 -92.1 117.4 -3.0 10.4 3.7 17 927 A I E -A 63 0A 66 -2,-0.6 75,-1.3 46,-0.2 2,-0.3 -0.811 7.0-158.6 -96.5 127.3 0.2 8.3 3.9 18 928 A I E -AB 62 91A 0 44,-2.7 44,-2.1 -2,-0.5 2,-0.5 -0.787 6.8-142.1-105.5 148.1 1.6 6.8 0.7 19 929 A K E -AB 61 90A 100 71,-2.5 71,-1.7 -2,-0.3 2,-0.5 -0.937 11.4-160.2-113.1 124.4 3.9 3.9 0.4 20 930 A V E +AB 60 89A 7 40,-3.3 40,-1.9 -2,-0.5 2,-0.3 -0.884 18.9 163.6-106.4 130.2 6.7 3.8 -2.2 21 931 A Q E + B 0 88A 84 67,-2.0 67,-3.0 -2,-0.5 38,-0.1 -0.864 45.2 51.7-137.1 170.5 8.3 0.6 -3.3 22 932 A N S S+ 0 0 97 -2,-0.3 -1,-0.2 65,-0.2 37,-0.1 0.947 70.3 153.1 66.8 50.1 10.5 -0.8 -6.2 23 933 A M - 0 0 16 35,-1.1 -1,-0.2 34,-0.2 63,-0.1 -0.941 39.1-128.4-117.0 132.6 13.1 1.9 -5.9 24 934 A P > - 0 0 7 0, 0.0 3,-1.0 0, 0.0 34,-0.1 -0.152 27.6-107.3 -69.8 167.8 16.8 1.5 -7.0 25 935 A F T 3 S+ 0 0 152 1,-0.2 33,-0.1 32,-0.1 32,-0.0 0.808 116.1 69.2 -66.4 -29.9 19.7 2.4 -4.8 26 936 A T T 3 S+ 0 0 103 2,-0.0 -1,-0.2 5,-0.0 5,-0.1 0.781 76.4 110.8 -59.3 -26.8 20.4 5.4 -7.0 27 937 A V < + 0 0 20 -3,-1.0 2,-0.3 55,-0.1 31,-0.1 -0.156 48.1 177.4 -50.8 141.1 17.2 6.9 -5.6 28 938 A S > - 0 0 64 1,-0.1 4,-2.6 20,-0.0 5,-0.2 -0.918 45.5-100.4-143.7 168.2 17.8 9.9 -3.3 29 939 A I H > S+ 0 0 99 -2,-0.3 4,-2.4 1,-0.2 5,-0.2 0.893 122.8 50.4 -57.0 -42.0 15.9 12.5 -1.2 30 940 A D H > S+ 0 0 115 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.920 110.8 48.2 -63.0 -45.5 16.5 15.1 -4.0 31 941 A E H > S+ 0 0 107 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.907 111.8 50.2 -62.1 -43.2 15.2 12.7 -6.7 32 942 A I H X S+ 0 0 7 -4,-2.6 4,-1.8 2,-0.2 -2,-0.2 0.940 108.9 50.7 -61.0 -49.5 12.1 11.8 -4.6 33 943 A L H < S+ 0 0 97 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.889 113.8 45.6 -56.2 -41.4 11.2 15.4 -3.9 34 944 A D H >< S+ 0 0 101 -4,-2.0 3,-1.4 1,-0.2 -1,-0.2 0.817 106.6 60.0 -71.8 -31.5 11.5 16.2 -7.7 35 945 A F H 3< S+ 0 0 34 -4,-2.0 -2,-0.2 1,-0.3 -1,-0.2 0.869 107.3 44.9 -64.2 -37.4 9.5 13.0 -8.5 36 946 A F T >< S+ 0 0 5 -4,-1.8 3,-1.5 -5,-0.1 -1,-0.3 0.171 87.9 146.9 -91.9 17.3 6.5 14.4 -6.5 37 947 A Y T < + 0 0 189 -3,-1.4 2,-0.3 1,-0.2 3,-0.1 -0.095 58.3 30.7 -52.2 151.9 6.9 17.8 -8.1 38 948 A G T 3 S+ 0 0 66 1,-0.2 2,-0.3 3,-0.0 -1,-0.2 -0.122 103.8 89.6 89.7 -39.0 3.7 19.8 -8.6 39 949 A Y S < S- 0 0 58 -3,-1.5 2,-1.1 -2,-0.3 -1,-0.2 -0.711 86.9-112.0 -95.1 144.2 2.0 18.2 -5.6 40 950 A Q - 0 0 155 -2,-0.3 2,-0.5 -3,-0.1 25,-0.4 -0.619 36.9-165.8 -77.0 100.7 2.3 19.7 -2.1 41 951 A V - 0 0 34 -2,-1.1 23,-0.2 23,-0.1 3,-0.1 -0.783 24.4-113.1 -93.0 125.6 4.3 17.2 -0.2 42 952 A I >> - 0 0 40 21,-1.2 3,-1.1 -2,-0.5 4,-0.6 -0.232 37.1-106.5 -55.8 138.4 4.3 17.6 3.6 43 953 A P T 34 S+ 0 0 119 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.427 100.8 10.7 -69.7 138.8 7.7 18.6 5.1 44 954 A G T 34 S+ 0 0 76 -2,-0.1 -2,-0.1 -3,-0.1 -3,-0.0 0.348 100.1 107.9 76.3 -9.0 9.6 15.9 7.0 45 955 A S T <4 + 0 0 18 -3,-1.1 16,-0.2 18,-0.1 2,-0.1 0.973 45.2 94.7 -63.6 -56.8 7.1 13.4 5.6 46 956 A V < - 0 0 33 -4,-0.6 2,-0.6 17,-0.1 16,-0.2 -0.125 58.9-178.0 -41.3 100.1 9.5 11.8 3.1 47 957 A C E -C 61 0A 71 14,-3.0 14,-1.9 -2,-0.1 2,-0.4 -0.920 12.3-156.1-113.8 110.2 10.7 8.9 5.3 48 958 A L E -C 60 0A 44 -2,-0.6 2,-0.4 12,-0.2 12,-0.2 -0.693 9.9-142.7 -87.0 132.5 13.3 6.6 3.7 49 959 A K E -C 59 0A 132 10,-2.1 8,-1.9 -2,-0.4 10,-0.6 -0.771 17.8-170.3 -97.1 138.1 13.6 3.1 5.1 50 960 A Y E -C 56 0A 112 -2,-0.4 5,-0.1 6,-0.2 0, 0.0 -0.890 23.3-105.7-126.3 156.7 17.0 1.3 5.4 51 961 A N - 0 0 81 4,-2.9 -1,-0.1 -2,-0.3 6,-0.1 0.018 48.6 -86.6 -68.0-178.6 18.1 -2.2 6.2 52 962 A E S S+ 0 0 184 1,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.847 132.0 50.0 -60.0 -34.9 19.5 -3.3 9.6 53 963 A K S S- 0 0 199 2,-0.1 -1,-0.2 1,-0.0 -3,-0.0 0.857 122.1-106.5 -72.4 -36.4 23.0 -2.3 8.3 54 964 A G S S+ 0 0 34 1,-0.4 -2,-0.1 -5,-0.0 3,-0.1 0.200 74.2 132.7 128.6 -14.0 21.8 1.1 7.2 55 965 A M - 0 0 126 -5,-0.1 -4,-2.9 1,-0.1 -1,-0.4 -0.233 67.7 -87.6 -66.5 157.0 21.7 0.7 3.4 56 966 A P E - C 0 50A 40 0, 0.0 -6,-0.2 0, 0.0 -1,-0.1 -0.482 28.2-162.0 -69.8 129.6 18.7 1.8 1.4 57 967 A T E - 0 0 38 -8,-1.9 -34,-0.2 -2,-0.2 -7,-0.1 0.337 46.5-109.8 -92.5 5.8 16.0 -0.9 1.0 58 968 A G E S+ 0 0 8 -9,-0.3 -35,-1.1 1,-0.3 2,-0.4 0.754 82.1 120.0 72.4 24.0 14.4 1.0 -1.9 59 969 A E E + C 0 49A 57 -10,-0.6 -10,-2.1 -38,-0.1 2,-0.3 -0.937 34.6 171.9-123.9 145.9 11.4 1.9 0.2 60 970 A A E -AC 20 48A 4 -40,-1.9 -40,-3.3 -2,-0.4 2,-0.4 -0.993 16.5-148.9-150.3 152.8 10.0 5.3 1.1 61 971 A M E -AC 19 47A 89 -14,-1.9 -14,-3.0 -2,-0.3 2,-0.3 -0.960 15.0-179.8-127.0 143.7 7.0 6.8 2.8 62 972 A V E -A 18 0A 3 -44,-2.1 -44,-2.7 -2,-0.4 2,-0.3 -0.915 13.6-142.4-137.6 163.6 5.2 10.2 2.3 63 973 A A E -A 17 0A 10 -2,-0.3 -21,-1.2 -46,-0.3 2,-0.4 -0.907 7.3-159.2-127.9 155.8 2.2 12.1 3.7 64 974 A F E -A 16 0A 1 -48,-1.3 -48,-2.4 -2,-0.3 -23,-0.1 -0.999 18.3-149.5-138.1 138.4 -0.5 14.3 2.1 65 975 A E S S+ 0 0 157 -25,-0.4 2,-0.5 -2,-0.4 -1,-0.1 0.816 91.8 47.1 -72.7 -31.3 -2.8 16.9 3.7 66 976 A S > - 0 0 37 1,-0.1 4,-2.0 -50,-0.1 -1,-0.1 -0.951 68.4-152.1-117.6 130.1 -5.5 16.2 1.1 67 977 A R H > S+ 0 0 131 -2,-0.5 4,-2.7 1,-0.2 5,-0.3 0.891 99.1 57.2 -63.2 -40.8 -6.6 12.7 0.1 68 978 A D H > S+ 0 0 89 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.881 107.7 48.2 -57.9 -40.0 -7.6 13.9 -3.3 69 979 A E H > S+ 0 0 84 2,-0.2 4,-3.1 1,-0.2 5,-0.2 0.923 110.8 50.0 -67.3 -45.7 -4.0 15.1 -3.9 70 980 A A H X S+ 0 0 0 -4,-2.0 4,-2.4 2,-0.2 -2,-0.2 0.933 114.3 44.2 -58.6 -48.8 -2.5 11.9 -2.7 71 981 A T H X S+ 0 0 46 -4,-2.7 4,-2.6 2,-0.2 5,-0.2 0.912 115.0 49.0 -63.4 -44.0 -4.7 9.8 -4.9 72 982 A A H X S+ 0 0 37 -4,-2.3 4,-2.8 -5,-0.3 5,-0.2 0.932 112.9 46.7 -61.7 -47.8 -4.2 12.0 -7.9 73 983 A A H X S+ 0 0 0 -4,-3.1 4,-2.0 2,-0.2 -1,-0.2 0.901 112.9 50.2 -61.6 -42.6 -0.4 12.1 -7.5 74 984 A V H < S+ 0 0 12 -4,-2.4 -2,-0.2 -5,-0.2 -1,-0.2 0.937 114.5 42.8 -61.8 -48.8 -0.3 8.3 -7.1 75 985 A I H >< S+ 0 0 111 -4,-2.6 3,-0.7 1,-0.2 -2,-0.2 0.899 118.7 44.6 -65.0 -41.7 -2.4 7.7 -10.2 76 986 A D H 3< S+ 0 0 100 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.747 125.8 34.0 -74.0 -24.2 -0.5 10.3 -12.2 77 987 A L T >< S+ 0 0 13 -4,-2.0 3,-1.0 -5,-0.2 2,-0.5 0.081 88.0 130.8-116.8 20.6 2.8 9.0 -10.8 78 988 A N T < S+ 0 0 77 -3,-0.7 10,-0.1 1,-0.3 -3,-0.1 -0.662 81.5 2.6 -80.6 120.5 1.8 5.3 -10.6 79 989 A D T 3 S+ 0 0 82 8,-1.0 -1,-0.3 -2,-0.5 9,-0.2 0.876 88.3 174.5 73.3 39.0 4.3 3.0 -12.2 80 990 A R < - 0 0 123 -3,-1.0 7,-2.2 7,-0.5 2,-1.6 -0.659 37.3-120.3 -83.5 128.7 6.7 5.9 -13.0 81 991 A P E -D 86 0B 101 0, 0.0 2,-0.5 0, 0.0 5,-0.3 -0.489 35.9-170.4 -69.7 87.7 10.1 4.8 -14.4 82 992 A I E > -D 85 0B 18 -2,-1.6 3,-2.7 3,-1.4 2,-1.2 -0.715 58.1 -43.9 -86.0 123.3 12.5 6.2 -11.7 83 993 A G T 3 S- 0 0 65 -2,-0.5 3,-0.1 1,-0.3 -60,-0.0 -0.405 127.0 -24.8 61.7 -94.2 16.1 6.1 -12.7 84 994 A S T 3 S+ 0 0 102 -2,-1.2 2,-0.3 1,-0.1 -1,-0.3 0.356 132.1 54.9-129.5 -3.1 16.4 2.6 -14.1 85 995 A R E < S-D 82 0B 131 -3,-2.7 -3,-1.4 -5,-0.1 2,-0.3 -0.932 81.3-109.9-133.5 156.6 13.4 1.0 -12.3 86 996 A K E -D 81 0B 114 -2,-0.3 2,-0.3 -5,-0.3 -6,-0.0 -0.631 29.4-137.8 -87.3 143.3 9.7 1.7 -11.9 87 997 A V - 0 0 2 -7,-2.2 -8,-1.0 -2,-0.3 2,-0.5 -0.721 7.0-140.6-101.1 151.0 8.3 2.8 -8.6 88 998 A K E -B 21 0A 97 -67,-3.0 -67,-2.0 -2,-0.3 2,-0.5 -0.946 12.6-163.9-115.2 125.2 5.1 1.6 -7.0 89 999 A L E +B 20 0A 5 -2,-0.5 2,-0.4 -69,-0.2 -69,-0.2 -0.918 9.7 178.5-111.1 129.5 2.7 3.9 -5.1 90 1000 A V E -B 19 0A 65 -71,-1.7 -71,-2.5 -2,-0.5 2,-0.2 -0.989 28.0-118.6-132.2 138.8 0.0 2.7 -2.8 91 1001 A L E -B 18 0A 59 -2,-0.4 -73,-0.2 -73,-0.2 -75,-0.0 -0.475 17.0-144.8 -74.2 142.2 -2.5 4.6 -0.6 92 1002 A G S S+ 0 0 41 -75,-1.3 -1,-0.1 -2,-0.2 -74,-0.1 0.997 78.6 51.4 -69.0 -74.9 -2.3 4.1 3.1 93 1003 A S S S- 0 0 76 -76,-0.1 4,-0.1 2,-0.1 -2,-0.0 -0.243 94.0 -22.3 -63.7 152.6 -5.9 4.2 4.3 94 1004 A G - 0 0 42 2,-0.4 3,-0.1 1,-0.1 0, 0.0 -0.580 18.0-167.5 114.6-178.7 -8.5 2.0 2.6 95 1005 A P S S+ 0 0 142 0, 0.0 2,-0.4 0, 0.0 -2,-0.1 -0.985 109.4 65.1 -69.7 -6.5 -9.8 0.4 0.8 96 1006 A S S S- 0 0 104 2,-0.0 2,-0.6 1,-0.0 -2,-0.4 -0.599 77.4-148.0 -76.7 125.3 -12.4 1.2 3.4 97 1007 A S 0 0 94 -2,-0.4 -1,-0.0 1,-0.1 -4,-0.0 -0.837 360.0 360.0 -98.7 123.2 -13.3 4.9 3.5 98 1008 A G 0 0 121 -2,-0.6 -1,-0.1 0, 0.0 -2,-0.0 0.286 360.0 360.0 -72.5 360.0 -14.2 6.3 6.9