==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT(HEME PROTEIN) 06-AUG-93 1CRG . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR A.M.BERGHUIS,G.D.BRAYER . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6500.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 58.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 32.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 149 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 113.4 3.5 10.7 -8.7 2 -4 A E + 0 0 158 1,-0.3 2,-0.3 0, 0.0 0, 0.0 -0.027 360.0 65.9-160.1 28.6 0.6 11.7 -6.4 3 -3 A F - 0 0 31 67,-0.0 2,-0.3 94,-0.0 -1,-0.3 -0.814 60.7-176.9-155.7 116.1 1.6 15.3 -5.6 4 -2 A K - 0 0 159 -2,-0.3 97,-0.1 -3,-0.1 2,-0.1 -0.832 37.1 -82.6-119.9 155.1 1.7 18.0 -8.4 5 -1 A A + 0 0 86 -2,-0.3 93,-0.2 1,-0.1 92,-0.1 -0.263 48.3 177.1 -61.1 137.2 2.8 21.6 -8.0 6 1 A G - 0 0 30 91,-0.7 2,-0.7 92,-0.1 92,-0.1 -0.088 40.7 -48.1-117.5-154.8 0.5 24.4 -6.7 7 2 A S > - 0 0 44 1,-0.2 4,-2.2 -2,-0.1 95,-0.3 -0.838 32.6-168.1 -92.5 117.6 0.5 28.0 -5.8 8 3 A A H > S+ 0 0 29 -2,-0.7 4,-2.3 2,-0.2 -1,-0.2 0.822 94.9 51.1 -69.3 -37.9 3.4 29.1 -3.6 9 4 A K H > S+ 0 0 182 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.945 114.6 41.2 -61.9 -52.3 1.5 32.4 -3.1 10 5 A K H > S+ 0 0 85 1,-0.2 4,-1.3 2,-0.2 3,-0.4 0.880 115.0 56.0 -59.9 -40.0 -1.7 30.6 -2.1 11 6 A G H X S+ 0 0 0 -4,-2.2 4,-2.0 1,-0.2 3,-0.2 0.916 102.3 52.9 -57.6 -47.9 0.7 28.2 -0.2 12 7 A A H X S+ 0 0 21 -4,-2.3 4,-1.1 1,-0.2 -1,-0.2 0.708 108.9 50.0 -63.8 -30.3 2.3 31.0 1.9 13 8 A T H X S+ 0 0 75 -4,-1.0 4,-2.3 -3,-0.4 -1,-0.2 0.659 107.3 52.3 -84.2 -28.2 -1.1 32.3 3.1 14 9 A L H X S+ 0 0 17 -4,-1.3 4,-3.1 -3,-0.2 5,-0.5 0.918 108.5 53.0 -72.7 -44.3 -2.4 28.9 4.2 15 10 A F H X>S+ 0 0 3 -4,-2.0 4,-2.6 2,-0.2 5,-2.3 0.963 109.4 48.5 -54.1 -51.3 0.8 28.6 6.2 16 11 A K H <5S+ 0 0 129 -4,-1.1 4,-0.4 1,-0.2 5,-0.3 0.982 119.8 36.8 -58.1 -48.6 0.1 32.0 7.8 17 12 A T H <5S+ 0 0 122 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.662 132.5 23.8 -79.8 -24.2 -3.6 31.1 8.7 18 13 A R H <5S+ 0 0 109 -4,-3.1 -3,-0.2 -5,-0.1 -2,-0.2 0.480 131.4 24.6-122.0 -10.4 -3.0 27.3 9.6 19 14 A C T >X5S+ 0 0 19 -4,-2.6 4,-1.5 -5,-0.5 3,-1.4 0.700 97.3 79.7-125.3 -28.6 0.6 26.7 10.6 20 15 A L T 34 S- 0 0 95 1,-0.1 3,-2.1 12,-0.1 12,-0.3 -0.292 79.2-104.7 -74.3 146.7 13.1 30.5 8.4 27 22 A K T 3 S+ 0 0 164 1,-0.3 -1,-0.1 10,-0.1 -2,-0.1 -0.548 115.2 22.5 -64.9 116.5 16.6 29.4 8.9 28 23 A G T 3 S+ 0 0 80 1,-0.4 -1,-0.3 -2,-0.3 -2,-0.1 0.495 94.0 135.3 97.9 1.8 17.4 30.8 12.4 29 24 A G < - 0 0 16 -3,-2.1 -1,-0.4 1,-0.1 7,-0.2 -0.488 56.3-106.7 -82.5 147.3 13.7 31.0 13.4 30 25 A P - 0 0 81 0, 0.0 -6,-0.2 0, 0.0 2,-0.2 -0.483 20.9-110.9 -78.5 158.4 12.8 29.7 16.8 31 26 A H + 0 0 63 -2,-0.2 2,-0.1 5,-0.1 -8,-0.1 -0.614 44.4 167.1 -78.4 140.0 11.0 26.6 17.9 32 27 A K - 0 0 90 2,-3.0 -10,-0.1 -10,-0.6 -9,-0.1 -0.010 67.4 -32.5-121.1-125.0 7.5 27.6 19.3 33 28 A V S S+ 0 0 100 -12,-0.4 -10,-0.1 -2,-0.1 -11,-0.1 0.929 142.7 29.1 -60.8 -51.2 4.6 25.1 20.0 34 29 A G S S- 0 0 7 -12,-3.1 -2,-3.0 1,-0.1 -10,-0.2 -0.602 106.8 -90.4-103.7 165.0 5.9 23.1 17.0 35 30 A P - 0 0 15 0, 0.0 -11,-0.3 0, 0.0 2,-0.2 -0.333 47.2 -87.6 -71.9 167.3 9.6 23.0 15.9 36 31 A N - 0 0 15 -7,-0.2 -11,-0.2 -13,-0.1 -5,-0.1 -0.548 36.1-150.8 -70.5 136.5 11.2 25.3 13.4 37 32 A L > + 0 0 26 -13,-2.5 3,-2.6 -2,-0.2 4,-0.3 0.320 45.1 136.4 -97.0 5.2 10.7 23.7 9.9 38 33 A H T 3 S+ 0 0 34 -12,-0.3 70,-0.2 1,-0.3 69,-0.1 -0.254 81.7 4.1 -50.4 134.8 13.8 25.1 8.2 39 34 A G T 3 S+ 0 0 26 68,-3.8 4,-0.3 -14,-0.2 -1,-0.3 0.519 84.5 140.3 62.2 19.1 15.4 22.3 6.1 40 35 A I X + 0 0 12 -3,-2.6 3,-1.4 2,-0.1 24,-0.4 0.783 41.2 98.1 -57.1 -33.2 12.6 19.7 6.9 41 36 A F T 3 S+ 0 0 34 -4,-0.3 24,-0.2 1,-0.3 3,-0.1 -0.488 98.1 6.9 -64.4 126.2 12.7 18.3 3.4 42 37 A G T 3 S+ 0 0 44 22,-3.5 -1,-0.3 1,-0.3 -2,-0.1 0.124 104.1 110.7 89.6 -19.7 14.8 15.1 3.4 43 38 A R S < S- 0 0 75 -3,-1.4 21,-2.5 -4,-0.3 -1,-0.3 -0.390 70.6-115.4 -77.1 158.0 15.3 15.0 7.1 44 39 A H B -A 63 0A 76 19,-0.2 3,-0.5 -3,-0.1 19,-0.2 -0.552 43.6 -84.0 -87.3 171.3 13.7 12.2 9.2 45 40 A S S S+ 0 0 0 17,-1.5 16,-0.2 1,-0.2 -1,-0.1 -0.462 105.6 22.9 -77.3 141.7 11.0 13.1 11.8 46 41 A G S S+ 0 0 12 -2,-0.2 -1,-0.2 14,-0.1 7,-0.1 0.836 87.1 110.4 72.4 46.4 11.9 14.2 15.3 47 42 A Q + 0 0 119 -3,-0.5 2,-0.2 2,-0.1 -2,-0.1 0.312 31.0 115.9-130.0 5.7 15.5 15.5 14.7 48 43 A A > - 0 0 14 1,-0.1 3,-0.9 -12,-0.0 2,-0.2 -0.585 69.6-115.5 -67.8 139.6 15.6 19.2 15.1 49 44 A E T 3 S+ 0 0 189 1,-0.2 3,-0.1 -2,-0.2 -1,-0.1 -0.474 91.9 24.6 -87.5 153.6 17.8 20.1 18.0 50 45 A G T 3 S+ 0 0 81 1,-0.3 2,-0.5 -2,-0.2 -1,-0.2 0.605 94.8 117.4 83.9 9.6 16.4 21.7 21.1 51 46 A Y < - 0 0 46 -3,-0.9 2,-1.4 -15,-0.0 -1,-0.3 -0.901 60.7-142.0-117.6 133.6 12.9 20.4 20.5 52 47 A S - 0 0 91 -2,-0.5 2,-0.1 -3,-0.1 -3,-0.1 -0.628 30.3-177.8 -89.1 83.1 11.1 18.0 22.8 53 48 A Y - 0 0 34 -2,-1.4 2,-0.1 -5,-0.2 30,-0.0 -0.455 31.2-100.4 -81.5 160.6 9.2 15.7 20.3 54 49 A T > - 0 0 30 -2,-0.1 4,-1.2 1,-0.1 3,-0.2 -0.393 32.0-111.3 -71.6 161.2 6.8 12.9 21.5 55 50 A D H > S+ 0 0 128 1,-0.2 4,-1.7 2,-0.2 5,-0.2 0.844 114.2 61.0 -59.9 -44.5 8.2 9.3 21.5 56 51 A A H > S+ 0 0 27 26,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.762 101.5 45.9 -50.2 -50.3 5.8 8.6 18.6 57 52 A I H > S+ 0 0 16 1,-0.2 4,-1.2 -3,-0.2 5,-0.4 0.899 114.1 49.1 -69.3 -42.5 7.1 11.0 16.0 58 53 A I H < S+ 0 0 73 -4,-1.2 -2,-0.2 1,-0.2 -1,-0.2 0.884 114.5 44.8 -57.1 -47.3 10.7 10.0 16.6 59 54 A K H < S+ 0 0 162 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.628 103.3 64.3 -71.5 -28.3 10.0 6.3 16.4 60 55 A K H < S- 0 0 79 -4,-1.1 -1,-0.2 -5,-0.2 -2,-0.2 0.816 84.2-168.5 -67.8 -32.3 7.8 6.8 13.3 61 56 A N < - 0 0 75 -4,-1.2 2,-0.3 -16,-0.2 -3,-0.1 0.872 9.5-177.7 33.5 69.1 11.0 8.0 11.6 62 57 A V - 0 0 8 -5,-0.4 -17,-1.5 6,-0.0 2,-0.6 -0.718 26.8-133.2 -91.0 138.8 9.5 9.4 8.5 63 58 A L B -A 44 0A 70 -2,-0.3 2,-0.8 -19,-0.2 -19,-0.2 -0.906 29.8-126.5-100.0 117.9 11.6 10.8 5.7 64 59 A W + 0 0 11 -21,-2.5 -22,-3.5 -2,-0.6 2,-0.3 -0.638 46.4 150.1 -80.6 107.9 10.0 14.1 4.8 65 60 A D >> - 0 0 60 -2,-0.8 4,-2.0 -24,-0.2 3,-0.7 -0.819 63.4 -97.1-125.6 165.3 9.3 14.4 1.0 66 61 A E H 3> S+ 0 0 69 -2,-0.3 4,-0.6 1,-0.2 34,-0.1 0.725 124.8 50.9 -58.0 -26.3 6.4 16.3 -0.6 67 62 A N H 3> S+ 0 0 52 2,-0.2 4,-1.2 3,-0.1 -1,-0.2 0.777 109.9 44.2 -83.3 -34.4 4.4 13.1 -0.7 68 63 A N H <> S+ 0 0 33 -3,-0.7 4,-3.4 2,-0.2 -2,-0.2 0.851 112.6 53.4 -70.7 -50.6 4.8 11.9 2.9 69 64 A M H X S+ 0 0 12 -4,-2.0 4,-2.8 2,-0.2 -2,-0.2 0.812 104.7 58.2 -55.8 -39.6 4.1 15.4 4.1 70 65 A S H X S+ 0 0 6 -4,-0.6 4,-1.4 -5,-0.3 -1,-0.2 0.943 109.3 40.8 -64.8 -49.6 0.9 15.3 2.0 71 66 A E H >X S+ 0 0 109 -4,-1.2 4,-1.0 1,-0.2 3,-0.5 0.945 115.6 53.4 -65.4 -42.1 -0.5 12.2 3.7 72 67 A Y H >< S+ 0 0 17 -4,-3.4 3,-0.8 1,-0.2 7,-0.2 0.926 106.4 52.0 -56.1 -48.3 0.7 13.7 7.0 73 68 A L H 3< S+ 0 0 12 -4,-2.8 17,-1.9 1,-0.2 -1,-0.2 0.786 99.5 65.3 -59.8 -27.2 -1.1 16.9 6.4 74 69 A T H << S- 0 0 46 -4,-1.4 -1,-0.2 -3,-0.5 -2,-0.2 0.867 131.9 -15.9 -59.7 -44.6 -4.3 15.1 5.7 75 70 A N S+ 0 0 0 0, 0.0 4,-2.7 0, 0.0 7,-0.1 0.890 87.6 45.0 -54.3 -57.0 -1.6 13.9 11.4 77 72 A X H 4 S+ 0 0 149 10,-0.4 6,-0.1 2,-0.2 11,-0.1 0.807 113.1 53.8 -61.0 -35.4 -2.8 11.8 14.4 78 73 A K H 4 S+ 0 0 167 1,-0.2 -1,-0.2 -6,-0.1 -6,-0.1 0.988 114.3 42.0 -62.4 -54.2 -4.2 9.3 11.9 79 74 A Y H < S+ 0 0 54 -4,-2.6 -2,-0.2 1,-0.3 -1,-0.2 0.757 133.6 17.8 -56.9 -48.6 -0.7 9.2 10.3 80 75 A I S >< S- 0 0 3 -4,-2.7 3,-2.0 -8,-0.1 -1,-0.3 -0.721 83.8-150.7-127.9 77.8 1.4 9.1 13.5 81 76 A P T 3 S+ 0 0 95 0, 0.0 -3,-0.1 0, 0.0 3,-0.1 -0.242 84.2 34.4 -51.7 132.8 -0.9 8.1 16.3 82 77 A G T 3 S+ 0 0 56 1,-0.3 -26,-0.2 3,-0.1 -25,-0.2 0.352 80.9 143.7 100.6 -4.5 0.5 9.7 19.5 83 78 A T < - 0 0 10 -3,-2.0 -1,-0.3 1,-0.1 -6,-0.1 -0.394 49.6-144.5 -67.0 135.4 1.7 12.9 17.9 84 79 A K + 0 0 101 -2,-0.1 2,-0.8 -3,-0.1 -1,-0.1 0.571 65.7 120.5 -79.5 -0.7 1.3 16.0 20.0 85 80 A M - 0 0 43 1,-0.1 2,-1.1 -9,-0.1 -8,-0.2 -0.495 50.7-162.7 -68.5 106.1 0.5 17.9 16.8 86 81 A A + 0 0 81 -2,-0.8 2,-0.4 -10,-0.1 -1,-0.1 -0.454 43.3 122.1 -89.0 60.4 -3.0 19.2 17.5 87 82 A F - 0 0 32 -2,-1.1 -10,-0.4 1,-0.2 3,-0.1 -0.985 54.9-147.2-122.0 126.9 -4.1 20.1 13.9 88 83 A G - 0 0 66 -2,-0.4 2,-0.2 1,-0.2 -1,-0.2 0.966 50.8-121.8 -58.0 -53.3 -7.3 18.4 12.4 89 84 A G - 0 0 9 -14,-0.2 2,-0.6 -13,-0.1 -15,-0.3 -0.771 13.2 -76.3 137.4 178.1 -5.8 18.5 8.9 90 85 A L - 0 0 6 -17,-1.9 6,-0.1 -2,-0.2 -15,-0.0 -0.920 33.8-177.3-115.6 99.6 -6.2 19.6 5.3 91 86 A K + 0 0 156 -2,-0.6 2,-0.5 4,-0.1 -1,-0.1 0.794 60.2 83.8 -71.9 -32.0 -8.8 17.5 3.4 92 87 A K > - 0 0 113 1,-0.2 4,-1.7 -18,-0.0 5,-0.2 -0.645 66.6-151.7 -76.6 122.9 -8.5 19.2 0.0 93 88 A E H > S+ 0 0 108 -2,-0.5 4,-2.7 1,-0.2 5,-0.2 0.892 96.6 60.0 -58.5 -34.9 -5.6 17.9 -2.1 94 89 A K H > S+ 0 0 126 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.966 105.3 46.4 -66.0 -41.8 -5.4 21.4 -3.7 95 90 A D H > S+ 0 0 35 1,-0.2 4,-3.3 2,-0.2 -1,-0.2 0.918 113.0 50.9 -61.1 -43.2 -4.7 23.2 -0.4 96 91 A R H X S+ 0 0 44 -4,-1.7 4,-2.3 2,-0.2 5,-0.2 0.869 109.8 50.7 -57.2 -44.0 -2.1 20.6 0.5 97 92 A N H X S+ 0 0 15 -4,-2.7 4,-1.8 1,-0.2 -91,-0.7 0.924 112.6 44.5 -68.2 -48.5 -0.5 21.1 -3.0 98 93 A D H X S+ 0 0 18 -4,-2.4 4,-2.3 -5,-0.2 -2,-0.2 0.926 113.3 51.2 -61.5 -46.7 -0.2 24.8 -2.6 99 94 A L H X S+ 0 0 1 -4,-3.3 4,-2.4 1,-0.2 -2,-0.2 0.925 113.4 43.4 -59.5 -44.1 1.1 24.5 1.1 100 95 A I H X S+ 0 0 0 -4,-2.3 4,-3.0 2,-0.2 5,-0.3 0.789 109.6 58.0 -67.1 -33.4 3.9 22.0 0.2 101 96 A T H X S+ 0 0 11 -4,-1.8 4,-0.9 -5,-0.2 -1,-0.2 0.945 111.8 42.3 -63.0 -45.3 4.7 24.1 -2.9 102 97 A Y H X S+ 0 0 33 -4,-2.3 4,-3.7 -95,-0.3 -2,-0.2 0.902 115.5 49.2 -62.6 -47.5 5.2 27.0 -0.4 103 98 A L H X S+ 0 0 6 -4,-2.4 4,-2.7 2,-0.2 -2,-0.2 0.895 103.0 57.8 -61.3 -52.6 7.1 24.8 2.1 104 99 A K H < S+ 0 0 78 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.810 117.9 38.2 -45.2 -39.0 9.5 23.2 -0.5 105 100 A K H >< S+ 0 0 117 -4,-0.9 3,-0.9 -5,-0.3 -2,-0.2 0.937 117.8 43.0 -83.0 -54.3 10.5 26.8 -1.2 106 101 A A H 3< S+ 0 0 27 -4,-3.7 -3,-0.2 1,-0.2 -2,-0.2 0.769 111.7 53.2 -74.0 -24.8 10.5 28.6 2.2 107 102 A T T 3< 0 0 0 -4,-2.7 -68,-3.8 -5,-0.2 -1,-0.2 0.311 360.0 360.0 -90.4 8.7 12.2 25.8 4.2 108 103 A E < 0 0 161 -3,-0.9 -1,-0.2 -70,-0.2 -2,-0.1 0.858 360.0 360.0 -87.3 360.0 15.2 25.5 1.8