==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT(CYTOCHROME) 06-AUG-93 1CRH . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR A.M.BERGHUIS,G.D.BRAYER . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6570.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 56.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 32.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 175 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 106.4 3.8 10.2 -9.0 2 -4 A E + 0 0 164 1,-0.3 2,-0.4 0, 0.0 0, 0.0 0.345 360.0 71.2-151.6 2.2 1.1 11.4 -6.6 3 -3 A F - 0 0 25 94,-0.0 2,-0.3 2,-0.0 -1,-0.3 -0.992 54.8-175.6-133.0 127.1 2.0 15.0 -5.7 4 -2 A K - 0 0 168 -2,-0.4 2,-0.4 -3,-0.1 97,-0.1 -0.840 34.1 -92.2-120.1 147.2 1.6 17.9 -8.2 5 -1 A A - 0 0 82 -2,-0.3 93,-0.1 1,-0.1 92,-0.1 -0.530 38.8-172.9 -77.2 126.7 2.7 21.6 -7.6 6 1 A G - 0 0 25 91,-0.8 2,-0.6 -2,-0.4 92,-0.1 0.145 40.1 -63.1 -93.5-166.4 0.4 24.3 -6.2 7 2 A S > - 0 0 51 1,-0.2 4,-2.6 2,-0.0 95,-0.2 -0.893 31.0-157.3 -92.8 119.4 0.7 28.0 -5.7 8 3 A A H > S+ 0 0 34 -2,-0.6 4,-4.3 2,-0.2 5,-0.2 0.868 97.9 53.5 -65.9 -41.2 3.4 29.2 -3.3 9 4 A K H > S+ 0 0 172 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.941 114.4 41.3 -59.0 -45.5 1.5 32.5 -2.7 10 5 A K H > S+ 0 0 110 2,-0.2 4,-1.3 1,-0.2 -2,-0.2 0.874 115.2 53.1 -68.8 -33.0 -1.6 30.4 -1.9 11 6 A G H >X S+ 0 0 0 -4,-2.6 4,-2.7 87,-0.3 3,-0.6 0.981 106.2 53.2 -61.9 -54.3 0.7 28.1 0.1 12 7 A A H 3X S+ 0 0 18 -4,-4.3 4,-2.1 1,-0.2 -1,-0.2 0.735 111.0 44.0 -51.5 -38.5 2.1 31.1 2.1 13 8 A T H 3X S+ 0 0 72 -4,-1.4 4,-1.6 2,-0.2 -1,-0.2 0.722 111.1 53.8 -81.9 -24.1 -1.3 32.4 3.3 14 9 A L H S+ 0 0 7 -4,-2.7 4,-2.9 1,-0.2 5,-1.5 0.962 108.3 51.6 -55.7 -57.0 0.6 28.6 6.2 16 11 A K H <5S+ 0 0 130 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.812 119.4 35.9 -49.9 -41.7 -0.1 32.0 7.9 17 12 A T H <5S+ 0 0 116 -4,-1.6 -1,-0.2 1,-0.1 -2,-0.2 0.725 130.4 28.2 -91.3 -19.0 -3.7 30.9 8.9 18 13 A R H <5S+ 0 0 115 -4,-2.6 -3,-0.2 -3,-0.4 -2,-0.2 0.540 131.9 19.6-118.0 -8.9 -3.2 27.2 9.6 19 14 A C T >X5S+ 0 0 21 -4,-2.9 4,-1.9 -5,-0.3 3,-1.9 0.711 98.3 81.3-132.8 -23.2 0.4 26.6 10.8 20 15 A L T 34 S- 0 0 98 1,-0.1 3,-2.8 2,-0.1 12,-0.3 -0.185 82.3 -95.0 -72.4 148.1 12.8 30.7 8.5 27 22 A K T 3 S+ 0 0 171 1,-0.3 -1,-0.1 79,-0.2 -2,-0.1 -0.453 118.9 12.8 -56.9 118.2 16.4 29.5 8.9 28 23 A G T 3 S+ 0 0 74 1,-0.3 -1,-0.3 -2,-0.2 -2,-0.1 0.584 93.4 146.3 82.8 7.8 17.2 30.3 12.5 29 24 A G < - 0 0 11 -3,-2.8 -1,-0.3 1,-0.1 7,-0.2 -0.445 52.4-109.5 -72.2 148.2 13.5 30.9 13.2 30 25 A P - 0 0 73 0, 0.0 -6,-0.4 0, 0.0 2,-0.1 -0.524 22.7-106.5 -81.2 164.2 12.8 29.7 16.7 31 26 A H + 0 0 62 -2,-0.2 2,-0.1 19,-0.1 -8,-0.1 -0.494 43.9 166.8 -83.1 159.1 10.8 26.7 17.9 32 27 A K - 0 0 93 2,-2.8 -10,-0.1 -10,-0.4 -9,-0.1 -0.238 68.1 -34.2-138.0-137.9 7.3 27.5 19.4 33 28 A V S S+ 0 0 102 -12,-0.3 -10,-0.1 -2,-0.1 -11,-0.1 0.881 142.9 32.2 -56.9 -45.3 4.5 25.1 20.2 34 29 A G S S- 0 0 6 -12,-2.7 -2,-2.8 -15,-0.1 -10,-0.2 -0.778 105.4 -95.2-107.1 158.5 5.7 23.2 17.1 35 30 A P - 0 0 14 0, 0.0 -4,-0.1 0, 0.0 -11,-0.1 -0.349 43.2 -90.7 -72.7 160.7 9.4 23.0 16.0 36 31 A N - 0 0 15 -7,-0.2 -11,-0.2 -13,-0.1 -5,-0.1 -0.418 37.8-158.1 -67.0 139.9 11.1 25.3 13.4 37 32 A L > + 0 0 28 -13,-1.6 3,-2.1 -3,-0.1 4,-0.2 0.164 41.7 135.1-106.8 15.0 10.6 23.4 10.1 38 33 A H T 3 S+ 0 0 30 -12,-0.3 70,-0.1 1,-0.3 69,-0.1 -0.522 80.7 13.6 -66.1 142.8 13.4 25.0 8.1 39 34 A G T 3 S+ 0 0 31 68,-1.7 -1,-0.3 -14,-0.1 4,-0.2 0.506 84.8 139.8 69.4 15.8 15.3 22.2 6.3 40 35 A I X + 0 0 8 -3,-2.1 3,-1.0 2,-0.1 24,-0.3 0.756 44.4 89.1 -58.7 -37.4 12.4 19.6 7.0 41 36 A F T 3 S+ 0 0 55 1,-0.2 24,-0.2 -4,-0.2 3,-0.1 -0.532 100.2 13.9 -69.1 134.9 12.6 18.0 3.5 42 37 A G T 3 S+ 0 0 50 22,-3.7 -1,-0.2 1,-0.4 2,-0.1 0.124 108.3 107.1 89.0 -21.3 15.1 15.2 3.5 43 38 A R < - 0 0 68 -3,-1.0 21,-2.8 21,-0.3 -1,-0.4 -0.437 69.7-124.2 -83.8 160.2 15.2 15.2 7.2 44 39 A H B > -A 63 0A 80 19,-0.2 3,-0.7 -2,-0.1 19,-0.2 -0.740 37.9 -85.4 -98.7 159.2 13.5 12.5 9.3 45 40 A S T 3 S+ 0 0 1 17,-1.4 16,-0.2 -2,-0.3 -1,-0.1 -0.303 106.2 21.5 -67.7 141.6 10.8 13.2 12.0 46 41 A G T 3 S+ 0 0 8 -2,-0.1 -1,-0.2 15,-0.1 7,-0.1 0.794 87.9 108.5 73.6 32.7 12.0 14.1 15.6 47 42 A Q < + 0 0 120 -3,-0.7 2,-0.5 2,-0.1 -2,-0.1 0.281 35.2 112.3-122.9 8.5 15.6 15.4 14.9 48 43 A A > - 0 0 13 3,-0.0 3,-0.8 1,-0.0 2,-0.2 -0.738 67.3-131.2 -83.9 128.8 15.4 19.1 15.4 49 44 A E T 3 S+ 0 0 181 -2,-0.5 3,-0.1 1,-0.2 -2,-0.1 -0.575 85.6 36.1 -83.0 148.4 17.5 19.7 18.5 50 45 A G T 3 S+ 0 0 75 -2,-0.2 2,-0.4 1,-0.2 -1,-0.2 0.683 97.0 107.3 85.4 18.4 16.3 21.8 21.3 51 46 A Y < - 0 0 43 -3,-0.8 2,-1.0 -5,-0.1 -1,-0.2 -0.995 63.7-141.8-132.5 131.6 12.8 20.5 20.8 52 47 A S + 0 0 98 -2,-0.4 2,-0.2 -3,-0.1 -3,-0.1 -0.758 29.7 178.6 -95.2 105.4 10.9 18.0 22.9 53 48 A Y - 0 0 35 -2,-1.0 30,-0.0 1,-0.1 -19,-0.0 -0.638 32.3 -96.3 -97.6 154.1 8.9 15.8 20.5 54 49 A T > - 0 0 32 -2,-0.2 4,-1.4 1,-0.1 5,-0.2 -0.169 31.8-110.6 -65.6 165.0 6.6 12.9 21.6 55 50 A D H > S+ 0 0 131 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.968 115.2 60.2 -60.7 -50.9 7.7 9.2 21.6 56 51 A A H > S+ 0 0 21 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.744 102.8 47.5 -45.7 -49.5 5.4 8.6 18.6 57 52 A I H >> S+ 0 0 14 2,-0.2 4,-1.5 1,-0.2 3,-0.6 0.961 115.2 43.4 -67.2 -50.0 7.0 11.0 16.2 58 53 A I H 3< S+ 0 0 84 -4,-1.4 3,-0.4 1,-0.2 -2,-0.2 0.943 113.9 55.0 -53.7 -47.5 10.6 10.0 16.8 59 54 A K H 3< S+ 0 0 160 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.726 103.0 53.5 -58.1 -33.3 9.5 6.4 16.7 60 55 A K H << S- 0 0 86 -4,-1.3 -1,-0.2 -3,-0.6 -2,-0.2 0.806 82.7-166.2 -77.0 -32.3 7.9 6.7 13.3 61 56 A N < - 0 0 79 -4,-1.5 2,-0.3 -3,-0.4 -3,-0.1 0.906 13.1-173.3 40.5 65.9 11.1 8.1 11.8 62 57 A V - 0 0 7 -5,-0.3 -17,-1.4 6,-0.0 2,-0.4 -0.678 25.4-125.5 -86.9 133.4 9.4 9.3 8.6 63 58 A L B -A 44 0A 73 -2,-0.3 2,-0.9 -19,-0.2 -19,-0.2 -0.772 30.6-126.8 -82.9 132.0 11.6 10.7 5.7 64 59 A W + 0 0 10 -21,-2.8 -22,-3.7 -2,-0.4 -21,-0.3 -0.777 53.2 133.2 -96.2 110.5 10.2 14.2 5.0 65 60 A D S > S- 0 0 59 -2,-0.9 4,-2.0 -24,-0.2 3,-0.3 -0.801 70.4 -91.5-140.7 166.6 9.4 14.6 1.3 66 61 A E H > S+ 0 0 69 -2,-0.3 4,-1.3 1,-0.2 34,-0.1 0.873 120.7 56.0 -59.1 -40.0 6.3 16.0 -0.4 67 62 A N H > S+ 0 0 61 1,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.882 113.8 37.2 -59.5 -46.9 4.6 12.6 -0.7 68 63 A N H > S+ 0 0 30 -3,-0.3 4,-2.9 2,-0.2 5,-0.2 0.778 110.8 60.2 -70.4 -42.4 4.7 11.8 3.0 69 64 A M H X S+ 0 0 12 -4,-2.0 4,-1.5 1,-0.2 -2,-0.2 0.787 101.2 57.8 -65.9 -24.3 4.0 15.4 4.1 70 65 A S H X S+ 0 0 13 -4,-1.3 4,-1.1 2,-0.2 -1,-0.2 0.865 109.0 41.0 -74.4 -45.2 0.8 15.2 2.2 71 66 A E H X S+ 0 0 111 -4,-0.7 4,-1.6 2,-0.2 3,-0.3 0.893 114.4 52.5 -74.7 -36.4 -0.7 12.3 4.1 72 67 A Y H < S+ 0 0 16 -4,-2.9 3,-0.3 1,-0.3 -2,-0.2 0.947 110.1 52.1 -59.3 -38.9 0.7 13.6 7.4 73 68 A L H < S+ 0 0 14 -4,-1.5 17,-1.2 1,-0.2 -1,-0.3 0.775 102.0 58.4 -68.0 -27.8 -1.2 16.8 6.4 74 69 A T H < S- 0 0 29 -4,-1.1 -1,-0.2 -3,-0.3 -2,-0.2 0.915 135.6 -15.9 -68.9 -39.8 -4.4 15.0 5.8 75 70 A N X - 0 0 69 -4,-1.6 4,-2.6 -3,-0.3 -1,-0.2 -0.537 62.3-173.6-169.4 91.8 -4.6 13.6 9.3 76 71 A P H > S+ 0 0 0 0, 0.0 4,-3.3 0, 0.0 7,-0.2 0.907 87.8 49.5 -61.4 -49.3 -1.5 13.7 11.5 77 72 A X H 4 S+ 0 0 150 10,-0.4 5,-0.1 8,-0.2 6,-0.1 0.741 114.6 50.7 -61.5 -23.5 -2.9 11.7 14.5 78 73 A K H 4 S+ 0 0 158 -6,-0.2 -1,-0.2 2,-0.1 -6,-0.1 0.987 113.5 40.9 -74.4 -65.8 -4.0 9.3 11.9 79 74 A Y H < S+ 0 0 57 -4,-2.6 -2,-0.2 -8,-0.3 -1,-0.1 0.741 136.4 18.6 -49.9 -40.3 -0.6 9.1 10.2 80 75 A I S >< S- 0 0 4 -4,-3.3 3,-2.3 -8,-0.1 -1,-0.3 -0.873 79.5-153.5-138.8 90.3 1.2 9.0 13.6 81 76 A P T 3 S+ 0 0 95 0, 0.0 3,-0.1 0, 0.0 -3,-0.1 -0.441 84.8 36.3 -66.9 141.8 -1.0 8.1 16.6 82 77 A G T 3 S+ 0 0 56 1,-0.3 -26,-0.2 -5,-0.1 -25,-0.2 0.129 81.3 140.8 98.9 -18.7 0.5 9.7 19.7 83 78 A T < - 0 0 4 -3,-2.3 -1,-0.3 -7,-0.2 -6,-0.0 -0.291 49.7-145.4 -58.3 142.1 1.6 12.9 17.9 84 79 A K + 0 0 102 -3,-0.1 2,-0.8 2,-0.1 -1,-0.1 0.406 62.3 123.6 -87.9 -0.2 1.1 16.0 20.0 85 80 A M - 0 0 38 1,-0.1 2,-1.4 2,-0.1 -8,-0.2 -0.603 52.5-156.8 -65.6 107.0 0.3 17.9 16.8 86 81 A A + 0 0 85 -2,-0.8 2,-0.4 -10,-0.1 -1,-0.1 -0.533 46.4 125.3 -86.0 67.9 -3.1 19.3 17.6 87 82 A F - 0 0 35 -2,-1.4 -10,-0.4 1,-0.2 3,-0.1 -0.961 51.7-154.3-132.4 128.5 -4.3 19.8 13.9 88 83 A G - 0 0 60 -2,-0.4 2,-0.3 1,-0.2 -1,-0.2 0.984 53.0-118.7 -61.2 -55.8 -7.4 18.3 12.4 89 84 A G - 0 0 5 -14,-0.1 2,-0.3 -13,-0.1 -15,-0.2 -0.844 8.2 -87.0 144.2-177.8 -5.9 18.4 8.9 90 85 A L + 0 0 5 -17,-1.2 6,-0.1 -2,-0.3 -15,-0.0 -0.992 38.3 176.7-125.7 84.7 -6.1 19.7 5.3 91 86 A K + 0 0 110 -2,-0.3 2,-0.6 4,-0.0 -17,-0.1 0.771 56.0 90.6 -78.6 -23.2 -8.5 17.2 3.6 92 87 A K > - 0 0 120 1,-0.2 4,-2.2 -18,-0.0 5,-0.2 -0.706 64.5-156.9 -78.8 121.9 -8.4 19.1 0.3 93 88 A E H > S+ 0 0 109 -2,-0.6 4,-3.1 1,-0.2 5,-0.2 0.895 94.8 59.9 -63.7 -36.8 -5.6 17.9 -2.0 94 89 A K H > S+ 0 0 126 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.941 108.7 42.1 -59.2 -46.8 -5.6 21.3 -3.7 95 90 A D H > S+ 0 0 32 1,-0.2 4,-2.8 2,-0.2 -2,-0.2 0.878 112.8 53.6 -65.2 -41.6 -4.8 23.1 -0.4 96 91 A R H X S+ 0 0 38 -4,-2.2 4,-2.7 1,-0.2 5,-0.2 0.863 107.5 52.9 -56.5 -45.7 -2.3 20.5 0.5 97 92 A N H X S+ 0 0 18 -4,-3.1 4,-2.1 2,-0.2 -91,-0.8 0.958 110.5 44.5 -62.6 -50.8 -0.6 21.1 -2.8 98 93 A D H X S+ 0 0 20 -4,-1.8 4,-2.6 1,-0.2 -87,-0.3 0.963 114.8 49.0 -52.9 -56.7 -0.3 24.9 -2.5 99 94 A L H X S+ 0 0 1 -4,-2.8 4,-2.3 1,-0.2 -1,-0.2 0.890 112.4 46.8 -53.8 -45.1 0.9 24.6 1.1 100 95 A I H X S+ 0 0 0 -4,-2.7 4,-3.1 2,-0.3 -1,-0.2 0.772 109.2 54.4 -68.8 -31.2 3.6 22.0 0.2 101 96 A T H X S+ 0 0 13 -4,-2.1 4,-1.3 -5,-0.2 -2,-0.2 0.901 111.1 48.8 -65.8 -39.6 4.7 24.0 -2.8 102 97 A Y H X S+ 0 0 49 -4,-2.6 4,-2.6 -95,-0.2 -2,-0.3 0.918 114.4 41.6 -66.0 -48.4 5.1 26.8 -0.2 103 98 A L H X S+ 0 0 7 -4,-2.3 4,-2.1 2,-0.2 -2,-0.2 0.898 108.9 59.0 -70.1 -38.2 7.1 24.7 2.3 104 99 A K H < S+ 0 0 76 -4,-3.1 -1,-0.2 1,-0.2 -2,-0.2 0.875 115.4 40.7 -53.7 -36.1 9.2 23.1 -0.5 105 100 A K H < S+ 0 0 138 -4,-1.3 3,-0.3 -5,-0.2 -2,-0.2 0.916 120.4 34.1 -80.8 -51.1 10.1 26.7 -1.1 106 101 A A H < S+ 0 0 30 -4,-2.6 -79,-0.2 1,-0.2 -3,-0.2 0.834 108.8 60.4 -82.6 -36.1 10.6 28.4 2.2 107 102 A C < 0 0 4 -4,-2.1 -68,-1.7 1,-0.2 -66,-0.2 0.197 360.0 360.0 -73.0 16.5 12.1 25.6 4.3 108 103 A E 0 0 175 -3,-0.3 -1,-0.2 -70,-0.1 -2,-0.2 0.965 360.0 360.0 -92.2 360.0 14.7 25.8 1.7