==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT(CYTOCHROME) 06-AUG-93 1CRI . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR A.M.BERGHUIS,G.D.BRAYER . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6607.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 56.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 32.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 136 0, 0.0 3,-0.1 0, 0.0 66,-0.0 0.000 360.0 360.0 360.0 140.2 5.3 11.8 -7.1 2 -4 A E + 0 0 176 2,-0.0 2,-0.5 0, 0.0 0, 0.0 -0.229 360.0 96.2-146.4 16.9 1.6 11.8 -6.5 3 -3 A F - 0 0 15 94,-0.0 2,-0.4 97,-0.0 64,-0.1 -0.997 63.4-158.3-123.4 118.8 2.1 15.4 -5.4 4 -2 A K - 0 0 141 -2,-0.5 97,-0.2 -3,-0.1 2,-0.0 -0.847 27.9-105.6-101.8 134.5 1.5 18.1 -8.0 5 -1 A A + 0 0 85 -2,-0.4 93,-0.2 1,-0.1 2,-0.1 -0.334 46.0 179.4 -62.9 131.2 3.0 21.5 -7.8 6 1 A G - 0 0 31 91,-0.7 2,-0.5 92,-0.2 92,-0.1 0.019 41.4 -50.9-106.6-147.3 0.3 24.0 -6.7 7 2 A S > - 0 0 49 1,-0.1 4,-2.2 -2,-0.1 95,-0.3 -0.897 36.3-159.8-103.5 116.9 0.5 27.8 -6.1 8 3 A A H > S+ 0 0 38 -2,-0.5 4,-1.7 2,-0.2 -1,-0.1 0.820 93.5 51.7 -67.6 -31.2 3.2 28.9 -3.7 9 4 A K H > S+ 0 0 180 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.922 111.9 45.6 -71.2 -43.7 1.4 32.2 -2.9 10 5 A K H > S+ 0 0 97 1,-0.2 4,-1.2 2,-0.2 3,-0.2 0.915 112.3 55.2 -62.5 -39.5 -1.9 30.4 -2.1 11 6 A G H X S+ 0 0 0 -4,-2.2 4,-2.0 87,-0.3 -2,-0.2 0.803 101.8 55.7 -58.7 -37.6 0.3 28.1 -0.1 12 7 A A H X S+ 0 0 18 -4,-1.7 4,-2.6 1,-0.2 -1,-0.2 0.893 106.8 49.2 -65.0 -41.4 1.8 30.9 2.0 13 8 A T H X S+ 0 0 72 -4,-1.5 4,-2.3 -3,-0.2 -1,-0.2 0.764 107.9 53.7 -75.3 -20.0 -1.6 32.2 3.2 14 9 A L H X>S+ 0 0 15 -4,-1.2 4,-4.4 2,-0.2 5,-0.6 0.927 110.3 48.4 -71.2 -47.7 -2.7 28.6 4.2 15 10 A F H X>S+ 0 0 5 -4,-2.0 4,-2.8 2,-0.2 5,-2.5 0.974 111.8 49.4 -53.9 -56.1 0.5 28.4 6.3 16 11 A K H <5S+ 0 0 133 -4,-2.6 5,-0.3 1,-0.2 4,-0.3 0.971 121.3 34.4 -51.8 -48.3 -0.3 31.9 7.8 17 12 A T H <5S+ 0 0 112 -4,-2.3 -2,-0.2 1,-0.1 -1,-0.2 0.796 132.1 25.6 -84.5 -26.1 -3.9 30.9 8.6 18 13 A R H <5S+ 0 0 128 -4,-4.4 -3,-0.2 -5,-0.1 -2,-0.2 0.608 133.5 20.4-111.0 -18.7 -3.5 27.2 9.5 19 14 A C T >X S- 0 0 97 1,-0.1 3,-2.6 12,-0.1 12,-0.4 -0.323 77.0-103.6 -80.0 155.1 12.5 30.6 8.7 27 22 A K T 3 S+ 0 0 166 1,-0.3 -1,-0.1 10,-0.1 -2,-0.1 -0.453 116.8 14.4 -63.2 114.0 16.2 29.8 9.0 28 23 A G T 3 S+ 0 0 82 -2,-0.3 -1,-0.3 1,-0.3 -2,-0.1 0.532 96.5 144.2 91.1 4.3 17.0 30.8 12.6 29 24 A G < - 0 0 14 -3,-2.6 -1,-0.3 1,-0.1 7,-0.2 -0.208 50.6-108.8 -72.1 158.5 13.3 31.0 13.4 30 25 A P - 0 0 73 0, 0.0 -6,-0.4 0, 0.0 2,-0.3 -0.382 19.5-112.7 -90.1 165.6 12.3 29.9 16.9 31 26 A H + 0 0 64 4,-0.1 2,-0.2 5,-0.1 -8,-0.1 -0.685 42.6 166.5 -85.2 148.3 10.5 26.8 18.0 32 27 A K - 0 0 90 2,-3.1 -10,-0.1 -10,-0.5 -9,-0.1 -0.263 69.4 -33.8-129.8-131.6 7.0 27.7 19.6 33 28 A V S S+ 0 0 105 -12,-0.3 -10,-0.1 -2,-0.2 -11,-0.1 0.923 143.0 36.0 -58.1 -48.4 4.2 25.2 20.3 34 29 A G S S- 0 0 4 -12,-3.2 -2,-3.1 1,-0.1 -10,-0.2 -0.573 102.5 -99.0-103.5 159.3 5.5 23.4 17.3 35 30 A P - 0 0 15 0, 0.0 -11,-0.2 0, 0.0 -4,-0.1 -0.457 44.6 -91.1 -76.2 164.0 9.2 23.1 16.2 36 31 A N - 0 0 17 -7,-0.2 -11,-0.2 -13,-0.1 -5,-0.1 -0.366 30.8-149.4 -65.9 142.5 10.8 25.3 13.5 37 32 A L > + 0 0 27 -13,-2.6 3,-1.8 -2,-0.1 4,-0.2 0.336 46.5 135.8-100.6 6.9 10.5 23.7 10.0 38 33 A H T 3 S+ 0 0 27 -12,-0.4 70,-0.1 1,-0.3 69,-0.1 -0.394 83.4 3.6 -58.8 129.1 13.6 25.1 8.4 39 34 A G T 3 S+ 0 0 30 68,-1.9 -1,-0.3 -14,-0.2 69,-0.1 0.700 83.4 138.8 68.3 30.7 15.2 22.1 6.6 40 35 A I X + 0 0 14 -3,-1.8 3,-1.7 2,-0.1 24,-0.4 0.797 42.3 94.5 -72.7 -28.9 12.5 19.5 7.2 41 36 A F T 3 S+ 0 0 55 1,-0.3 24,-0.2 -4,-0.2 3,-0.1 -0.428 98.0 11.8 -68.9 138.8 12.5 17.9 3.7 42 37 A G T 3 S+ 0 0 56 22,-2.8 2,-0.3 1,-0.3 -1,-0.3 0.425 108.4 110.7 73.1 4.3 14.8 14.9 3.4 43 38 A R S < S- 0 0 67 -3,-1.7 21,-3.2 21,-0.3 -1,-0.3 -0.753 70.1-124.0-104.5 141.6 15.0 14.9 7.3 44 39 A H B > -A 63 0A 79 -2,-0.3 3,-0.5 19,-0.3 19,-0.2 -0.575 40.5 -89.5 -82.0 158.3 13.4 12.2 9.4 45 40 A S T 3 S+ 0 0 2 17,-1.6 -1,-0.1 1,-0.2 16,-0.1 -0.248 101.8 31.8 -72.1 159.1 10.9 13.3 12.1 46 41 A G T 3 S+ 0 0 16 14,-0.1 -1,-0.2 -2,-0.0 7,-0.1 0.721 87.0 111.7 70.3 29.4 11.7 14.2 15.7 47 42 A Q < + 0 0 124 -3,-0.5 2,-0.1 2,-0.1 -2,-0.1 0.545 29.6 111.6-114.3 -1.9 15.1 15.6 14.9 48 43 A A S > S- 0 0 17 1,-0.1 3,-0.8 -12,-0.1 2,-0.2 -0.438 70.7-113.1 -66.9 137.9 15.2 19.4 15.4 49 44 A E T 3 S+ 0 0 188 1,-0.2 -1,-0.1 -2,-0.1 3,-0.1 -0.408 90.9 19.9 -84.0 145.7 17.4 20.3 18.3 50 45 A G T 3 S+ 0 0 79 1,-0.2 2,-0.4 -2,-0.2 -1,-0.2 0.761 95.0 117.7 73.4 29.7 16.2 21.8 21.6 51 46 A Y < - 0 0 49 -3,-0.8 2,-1.6 -5,-0.1 -1,-0.2 -0.977 62.5-135.0-128.3 131.3 12.5 20.6 21.0 52 47 A S - 0 0 92 -2,-0.4 -3,-0.1 -3,-0.1 2,-0.0 -0.508 33.4-177.5 -86.0 87.9 10.6 18.2 23.2 53 48 A Y - 0 0 35 -2,-1.6 2,-0.1 -7,-0.1 -19,-0.0 -0.348 31.3 -98.2 -80.2 169.6 8.9 15.8 20.7 54 49 A T > - 0 0 28 1,-0.1 4,-1.2 -2,-0.0 -1,-0.1 -0.468 26.8-119.7 -76.7 165.5 6.5 13.0 21.6 55 50 A D H > S+ 0 0 124 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.856 114.0 63.8 -65.4 -42.2 7.9 9.5 21.9 56 51 A A H > S+ 0 0 26 26,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.867 103.4 39.6 -45.9 -60.3 5.4 8.9 19.1 57 52 A I H > S+ 0 0 17 2,-0.2 4,-0.9 1,-0.2 5,-0.4 0.807 113.8 56.9 -67.0 -31.9 6.8 11.1 16.4 58 53 A I H >< S+ 0 0 81 -4,-1.2 3,-0.8 1,-0.2 -2,-0.2 0.962 110.3 41.5 -58.8 -57.2 10.4 10.1 17.3 59 54 A K H 3< S+ 0 0 170 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.705 100.2 71.8 -61.9 -36.2 9.9 6.4 16.8 60 55 A K H 3< S- 0 0 84 -4,-1.5 -1,-0.3 -5,-0.2 -2,-0.2 0.857 78.7-168.2 -52.2 -39.9 7.8 6.9 13.6 61 56 A N << - 0 0 79 -4,-0.9 -1,-0.1 -3,-0.8 -3,-0.1 0.732 10.6-179.6 53.9 29.4 11.0 7.9 11.9 62 57 A V - 0 0 10 -5,-0.4 -17,-1.6 -18,-0.1 2,-0.7 -0.283 27.0-135.7 -55.5 137.5 9.2 9.3 8.8 63 58 A L B -A 44 0A 65 -19,-0.2 2,-0.6 -21,-0.0 -19,-0.3 -0.899 30.7-125.8 -96.4 116.0 11.6 10.6 6.2 64 59 A W + 0 0 9 -21,-3.2 -22,-2.8 -2,-0.7 -21,-0.3 -0.482 47.0 148.5 -70.8 113.7 9.8 13.9 5.2 65 60 A D > - 0 0 61 -2,-0.6 4,-2.6 -24,-0.2 3,-0.4 -0.828 63.6 -92.7-133.0 172.9 9.1 14.3 1.4 66 61 A E H > S+ 0 0 63 -2,-0.3 4,-1.3 1,-0.2 34,-0.1 0.721 126.3 48.0 -56.0 -29.8 6.3 16.0 -0.4 67 62 A N H > S+ 0 0 54 2,-0.2 4,-1.1 3,-0.1 -1,-0.2 0.807 112.4 44.8 -83.2 -35.4 4.4 12.7 -0.5 68 63 A N H > S+ 0 0 38 -3,-0.4 4,-2.1 2,-0.2 -2,-0.2 0.864 112.9 53.5 -70.0 -48.2 4.8 11.8 3.2 69 64 A M H X S+ 0 0 14 -4,-2.6 4,-2.3 1,-0.2 -2,-0.2 0.888 104.1 55.2 -56.5 -45.7 4.0 15.3 4.1 70 65 A S H X S+ 0 0 11 -4,-1.3 4,-1.4 1,-0.2 -1,-0.2 0.868 110.2 46.0 -59.2 -39.3 0.7 15.2 2.1 71 66 A E H X S+ 0 0 113 -4,-1.1 4,-1.4 1,-0.2 -1,-0.2 0.869 111.6 52.2 -71.4 -37.3 -0.5 12.1 3.9 72 67 A F H < S+ 0 0 15 -4,-2.1 7,-0.2 1,-0.2 -2,-0.2 0.930 109.3 48.0 -65.5 -43.5 0.5 13.6 7.2 73 68 A L H < S+ 0 0 13 -4,-2.3 17,-2.5 1,-0.2 -1,-0.2 0.769 101.0 67.3 -66.6 -27.5 -1.5 16.8 6.6 74 69 A T H < S- 0 0 42 -4,-1.4 -1,-0.2 1,-0.3 -2,-0.2 0.915 131.8 -15.3 -55.5 -49.2 -4.5 14.7 5.5 75 70 A N X - 0 0 55 -4,-1.4 4,-2.2 -3,-0.2 -1,-0.3 -0.695 63.1-168.0-164.1 102.5 -4.8 13.6 9.0 76 71 A P H > S+ 0 0 0 0, 0.0 4,-2.4 0, 0.0 7,-0.2 0.881 89.6 42.5 -65.1 -45.7 -2.0 14.0 11.6 77 72 A X H 4 S+ 0 0 149 10,-0.4 6,-0.2 1,-0.2 11,-0.1 0.825 114.0 54.0 -74.2 -24.0 -3.2 11.7 14.4 78 73 A K H 4 S+ 0 0 167 1,-0.2 -1,-0.2 -6,-0.1 -6,-0.1 0.901 113.1 43.1 -70.9 -41.7 -4.2 9.1 11.9 79 74 A Y H < S+ 0 0 54 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.868 132.3 19.2 -73.9 -38.8 -0.7 9.1 10.4 80 75 A I S >< S- 0 0 3 -4,-2.4 3,-2.4 -5,-0.2 -1,-0.3 -0.735 79.1-157.9-138.0 79.3 1.2 9.2 13.7 81 76 A P T 3 S+ 0 0 96 0, 0.0 -3,-0.1 0, 0.0 3,-0.1 -0.459 83.1 40.3 -58.0 136.9 -1.0 8.1 16.5 82 77 A G T 3 S+ 0 0 59 1,-0.3 -26,-0.2 3,-0.1 -25,-0.1 0.032 84.0 137.8 110.3 -25.8 0.4 9.5 19.7 83 78 A T < - 0 0 6 -3,-2.4 -1,-0.3 -7,-0.2 -3,-0.0 -0.190 48.4-151.8 -58.4 142.4 1.3 12.9 18.2 84 79 A K + 0 0 103 -3,-0.1 2,-0.3 2,-0.1 -1,-0.1 0.535 59.4 121.8 -90.4 -3.6 0.7 16.1 20.2 85 80 A M - 0 0 47 1,-0.1 2,-1.2 -9,-0.1 -8,-0.1 -0.425 56.4-150.6 -60.8 122.0 0.3 18.0 16.9 86 81 A A + 0 0 85 -2,-0.3 2,-0.4 -10,-0.1 -1,-0.1 -0.605 48.8 121.4 -96.5 79.6 -3.2 19.4 17.3 87 82 A F - 0 0 33 -2,-1.2 -10,-0.4 1,-0.1 3,-0.1 -0.983 50.0-155.0-142.6 124.9 -4.4 19.7 13.7 88 83 A G - 0 0 59 -2,-0.4 -1,-0.1 1,-0.2 2,-0.1 0.747 54.4-113.9 -66.2 -31.0 -7.5 18.0 12.2 89 84 A G - 0 0 9 -14,-0.1 2,-0.8 -13,-0.1 -15,-0.2 -0.265 13.0 -83.0 115.6 162.2 -6.1 18.1 8.7 90 85 A L - 0 0 12 -17,-2.5 6,-0.1 1,-0.1 -17,-0.0 -0.896 35.8-175.9-107.4 100.3 -6.3 19.4 5.2 91 86 A K + 0 0 120 -2,-0.8 2,-0.4 4,-0.1 -1,-0.1 0.748 58.1 78.5 -72.7 -28.4 -8.8 17.3 3.4 92 87 A K > - 0 0 133 1,-0.1 4,-1.7 -18,-0.0 5,-0.1 -0.701 67.1-148.1 -88.8 131.4 -8.5 18.8 -0.2 93 88 A E H > S+ 0 0 84 -2,-0.4 4,-3.0 1,-0.2 5,-0.2 0.849 98.8 58.5 -61.2 -40.1 -5.5 17.7 -2.3 94 89 A K H > S+ 0 0 147 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.918 107.6 45.8 -58.5 -46.8 -5.4 21.1 -4.0 95 90 A D H > S+ 0 0 34 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.814 114.3 48.7 -62.1 -43.0 -5.0 22.9 -0.6 96 91 A R H X S+ 0 0 31 -4,-1.7 4,-2.7 2,-0.2 -1,-0.2 0.873 110.8 51.0 -66.8 -37.7 -2.3 20.3 0.4 97 92 A N H X S+ 0 0 13 -4,-3.0 4,-2.5 2,-0.2 -91,-0.7 0.941 111.6 47.6 -65.4 -44.4 -0.5 20.8 -2.9 98 93 A D H X S+ 0 0 18 -4,-2.5 4,-2.0 1,-0.2 -87,-0.3 0.961 113.3 46.5 -57.3 -59.4 -0.5 24.5 -2.5 99 94 A L H X S+ 0 0 2 -4,-2.2 4,-2.1 1,-0.3 -1,-0.2 0.819 113.0 49.4 -53.0 -42.6 0.8 24.4 1.0 100 95 A I H X S+ 0 0 0 -4,-2.7 4,-2.6 2,-0.2 -1,-0.3 0.807 106.7 55.9 -69.9 -33.5 3.5 21.8 0.2 101 96 A T H X S+ 0 0 11 -4,-2.5 4,-1.2 1,-0.2 -2,-0.2 0.926 112.7 43.9 -60.3 -39.6 4.6 24.0 -2.8 102 97 A Y H X S+ 0 0 49 -4,-2.0 4,-2.6 -95,-0.3 -2,-0.2 0.849 113.0 48.6 -66.4 -47.5 5.1 26.8 -0.3 103 98 A L H X S+ 0 0 9 -4,-2.1 4,-3.0 2,-0.2 5,-0.2 0.911 106.2 59.4 -63.5 -45.6 6.8 24.7 2.4 104 99 A K H < S+ 0 0 77 -4,-2.6 4,-0.3 1,-0.2 -2,-0.2 0.877 115.3 34.6 -46.4 -46.6 9.2 23.3 -0.3 105 100 A K H >< S+ 0 0 157 -4,-1.2 3,-0.6 -5,-0.2 -1,-0.2 0.934 118.2 49.8 -79.7 -43.8 10.4 26.8 -1.1 106 101 A A H 3< S+ 0 0 29 -4,-2.6 -2,-0.2 1,-0.2 -3,-0.2 0.808 110.1 46.9 -73.9 -34.7 10.3 28.4 2.3 107 102 A T T 3< 0 0 2 -4,-3.0 -68,-1.9 -5,-0.2 -1,-0.2 0.466 360.0 360.0 -88.6 1.9 12.1 25.8 4.3 108 103 A E < 0 0 187 -3,-0.6 -2,-0.2 -4,-0.3 -1,-0.2 0.970 360.0 360.0 -77.9 360.0 15.0 25.4 1.8