==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT(CYTOCHROME) 06-AUG-93 1CRJ . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR A.M.BERGHUIS,G.D.BRAYER . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6558.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 57.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 32.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 124 0, 0.0 3,-0.1 0, 0.0 66,-0.0 0.000 360.0 360.0 360.0 -86.9 4.7 11.7 -7.8 2 -4 A E + 0 0 171 1,-0.2 2,-0.4 0, 0.0 0, 0.0 -0.148 360.0 76.4-166.4 18.8 1.2 12.0 -6.3 3 -3 A F - 0 0 17 94,-0.0 2,-0.4 93,-0.0 -1,-0.2 -0.968 67.6-164.3-133.8 124.7 1.8 15.6 -5.3 4 -2 A K - 0 0 167 -2,-0.4 97,-0.1 -3,-0.1 0, 0.0 -0.899 32.3 -94.4-120.4 145.2 1.6 18.2 -8.1 5 -1 A A + 0 0 84 -2,-0.4 93,-0.2 1,-0.1 2,-0.1 -0.287 49.9 175.4 -58.7 146.1 3.0 21.8 -7.8 6 1 A G - 0 0 31 91,-0.6 2,-0.7 92,-0.2 92,-0.1 -0.293 42.0 -40.3-127.4-150.8 0.4 24.3 -6.7 7 2 A S > - 0 0 47 1,-0.2 4,-2.2 -2,-0.1 95,-0.3 -0.804 35.7-167.9 -92.1 114.5 0.4 28.0 -5.8 8 3 A A H > S+ 0 0 31 -2,-0.7 4,-1.9 2,-0.2 -1,-0.2 0.857 94.4 50.2 -64.1 -42.7 3.3 29.1 -3.7 9 4 A K H > S+ 0 0 182 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.884 113.9 43.4 -61.4 -48.4 1.4 32.5 -3.1 10 5 A K H > S+ 0 0 108 1,-0.2 4,-1.4 2,-0.2 -2,-0.2 0.897 113.9 54.1 -57.1 -45.6 -1.8 30.6 -2.1 11 6 A G H X S+ 0 0 0 -4,-2.2 4,-1.6 87,-0.3 -2,-0.2 0.829 101.7 56.4 -60.0 -41.8 0.4 28.2 -0.0 12 7 A A H X S+ 0 0 20 -4,-1.9 4,-1.9 1,-0.2 -1,-0.2 0.779 109.7 45.7 -66.2 -37.2 2.1 31.1 1.9 13 8 A T H X S+ 0 0 79 -4,-1.2 4,-2.1 2,-0.2 -1,-0.2 0.703 108.1 55.3 -78.4 -25.1 -1.3 32.4 3.2 14 9 A L H X S+ 0 0 24 -4,-1.4 4,-2.5 2,-0.2 5,-0.4 0.919 108.7 51.4 -70.8 -42.4 -2.6 28.9 4.1 15 10 A F H X>S+ 0 0 3 -4,-1.6 4,-2.7 2,-0.2 5,-2.4 0.966 109.1 48.6 -58.5 -50.7 0.6 28.7 6.2 16 11 A K H <5S+ 0 0 124 -4,-1.9 5,-0.3 1,-0.2 -1,-0.2 0.963 119.1 38.9 -60.6 -40.3 -0.1 32.0 8.0 17 12 A T H <5S+ 0 0 117 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.716 131.1 23.3 -82.3 -22.6 -3.7 31.0 8.7 18 13 A R H <5S+ 0 0 118 -4,-2.5 -3,-0.2 -3,-0.2 -2,-0.2 0.499 132.2 20.3-119.8 -15.1 -3.1 27.3 9.6 19 14 A C T >X5S+ 0 0 22 -4,-2.7 3,-1.5 -5,-0.4 4,-1.4 0.670 98.5 79.8-126.5 -24.5 0.4 26.6 10.7 20 15 A L T 34 S- 0 0 94 1,-0.1 3,-1.8 12,-0.1 12,-0.4 -0.257 77.2-105.6 -73.7 151.8 12.9 30.6 8.5 27 22 A K T 3 S+ 0 0 167 1,-0.3 -1,-0.1 10,-0.1 -2,-0.1 -0.498 114.1 18.8 -62.8 121.8 16.5 29.5 8.9 28 23 A G T 3 S+ 0 0 80 1,-0.3 -1,-0.3 -2,-0.3 -2,-0.1 0.784 96.0 132.0 83.5 15.4 17.4 30.8 12.4 29 24 A G < - 0 0 14 -3,-1.8 -1,-0.3 1,-0.1 7,-0.2 -0.700 55.4-109.6 -98.8 151.6 13.7 31.1 13.4 30 25 A P - 0 0 79 0, 0.0 -6,-0.4 0, 0.0 2,-0.2 -0.351 18.7-104.7 -86.6 165.4 12.8 29.5 16.8 31 26 A H + 0 0 61 4,-0.1 2,-0.2 5,-0.1 -8,-0.1 -0.621 42.4 168.1 -77.5 144.5 10.7 26.6 18.0 32 27 A K S S- 0 0 93 2,-3.0 -10,-0.1 -10,-0.6 -9,-0.1 -0.130 70.6 -34.0-124.8-125.3 7.3 27.6 19.4 33 28 A V S S+ 0 0 103 -12,-0.3 -10,-0.1 -2,-0.2 -11,-0.1 0.931 142.5 30.0 -60.1 -50.7 4.6 25.1 20.1 34 29 A G S S- 0 0 6 -12,-2.9 -2,-3.0 1,-0.1 -10,-0.2 -0.642 105.3 -88.7-105.2 168.4 5.9 23.1 17.2 35 30 A P - 0 0 16 0, 0.0 -4,-0.1 0, 0.0 -11,-0.1 -0.375 44.9 -93.6 -74.5 158.0 9.4 23.0 15.9 36 31 A N - 0 0 17 -7,-0.2 -11,-0.2 -13,-0.2 -5,-0.1 -0.454 33.7-149.5 -63.1 137.7 11.0 25.4 13.4 37 32 A L > + 0 0 24 -13,-2.7 3,-2.0 -2,-0.1 4,-0.2 0.315 43.6 140.1 -99.9 7.5 10.6 23.7 10.0 38 33 A H T 3 S+ 0 0 33 -12,-0.4 70,-0.1 1,-0.3 -12,-0.1 -0.195 81.0 3.2 -51.9 132.3 13.7 25.1 8.2 39 34 A G T 3 S+ 0 0 28 68,-2.8 -1,-0.3 -14,-0.2 69,-0.1 0.677 85.4 143.5 60.1 34.5 15.3 22.4 6.1 40 35 A I X + 0 0 12 -3,-2.0 3,-1.6 2,-0.1 24,-0.4 0.684 39.5 93.9 -72.5 -25.3 12.6 19.8 6.9 41 36 A F T 3 S+ 0 0 39 1,-0.3 24,-0.2 -4,-0.2 3,-0.1 -0.500 98.6 11.9 -73.3 136.0 12.5 18.1 3.5 42 37 A G T 3 S+ 0 0 54 22,-4.5 -1,-0.3 1,-0.3 2,-0.2 0.469 105.2 109.6 79.1 -4.2 14.7 15.0 3.3 43 38 A R S < S- 0 0 68 -3,-1.6 21,-2.3 21,-0.3 -1,-0.3 -0.604 72.1-116.1 -97.3 157.8 15.2 15.1 7.2 44 39 A H B > -A 63 0A 73 19,-0.2 3,-0.5 -2,-0.2 19,-0.3 -0.675 40.5 -86.0 -91.1 163.9 13.6 12.3 9.3 45 40 A S T 3 S+ 0 0 0 17,-2.0 16,-0.1 -2,-0.2 -1,-0.1 -0.298 105.6 22.6 -67.0 145.2 10.8 13.1 11.8 46 41 A G T 3 S+ 0 0 11 -2,-0.1 -1,-0.2 -3,-0.1 7,-0.1 0.811 87.4 109.6 71.5 37.4 11.8 14.2 15.4 47 42 A Q < + 0 0 118 -3,-0.5 2,-0.3 2,-0.1 -2,-0.1 0.324 30.0 116.4-126.5 5.6 15.4 15.5 14.8 48 43 A A > - 0 0 18 1,-0.1 3,-1.0 3,-0.0 5,-0.2 -0.606 68.4-119.4 -71.2 141.1 15.5 19.2 15.2 49 44 A E T 3 S+ 0 0 182 -2,-0.3 3,-0.1 1,-0.2 -2,-0.1 -0.461 90.5 28.2 -86.3 152.8 17.8 20.0 18.2 50 45 A G T 3 S+ 0 0 79 1,-0.2 2,-0.4 -2,-0.1 -1,-0.2 0.497 95.1 112.4 81.0 7.0 16.5 21.8 21.2 51 46 A Y < - 0 0 41 -3,-1.0 2,-1.4 -5,-0.0 -1,-0.2 -0.933 64.3-135.7-118.6 130.9 12.9 20.5 20.8 52 47 A S - 0 0 92 -2,-0.4 2,-0.1 -3,-0.1 -3,-0.1 -0.553 32.7-176.8 -82.9 89.3 10.9 18.1 23.0 53 48 A Y - 0 0 38 -2,-1.4 2,-0.1 -5,-0.2 30,-0.0 -0.454 30.5 -98.7 -80.1 160.8 9.2 15.7 20.5 54 49 A T > - 0 0 31 1,-0.1 4,-1.2 -2,-0.1 3,-0.3 -0.395 30.1-113.6 -73.6 160.4 6.8 12.9 21.5 55 50 A D H > S+ 0 0 124 1,-0.2 4,-1.5 2,-0.2 5,-0.2 0.883 114.1 60.8 -55.7 -47.2 8.1 9.4 21.7 56 51 A A H > S+ 0 0 24 2,-0.2 4,-1.1 1,-0.2 -1,-0.2 0.684 101.0 44.0 -48.0 -51.4 5.8 8.7 18.7 57 52 A I H > S+ 0 0 19 -3,-0.3 4,-1.4 2,-0.2 5,-0.5 0.841 112.2 54.7 -74.9 -33.0 7.1 11.0 16.0 58 53 A I H < S+ 0 0 78 -4,-1.2 -2,-0.2 1,-0.2 -1,-0.2 0.907 113.8 42.0 -61.7 -42.0 10.7 10.0 16.8 59 54 A K H < S+ 0 0 154 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.627 102.0 65.3 -78.6 -25.0 9.7 6.4 16.4 60 55 A K H < S- 0 0 83 -4,-1.1 -1,-0.2 -5,-0.2 -2,-0.2 0.919 85.3-165.5 -63.1 -37.8 7.6 6.9 13.3 61 56 A N < - 0 0 79 -4,-1.4 -3,-0.1 1,-0.2 -2,-0.1 0.768 11.8-171.2 51.2 41.1 11.0 7.9 11.8 62 57 A V - 0 0 7 -5,-0.5 -17,-2.0 -18,-0.1 2,-0.7 -0.163 20.7-142.2 -58.8 139.4 9.4 9.5 8.8 63 58 A L B -A 44 0A 73 -19,-0.3 2,-0.8 -21,-0.0 -19,-0.2 -0.957 28.3-127.9-108.7 115.6 11.6 10.6 6.0 64 59 A W + 0 0 10 -21,-2.3 -22,-4.5 -2,-0.7 2,-0.3 -0.627 42.9 152.4 -78.4 104.2 10.0 13.9 4.8 65 60 A D >> - 0 0 64 -2,-0.8 4,-2.6 -24,-0.2 3,-1.1 -0.831 62.2 -99.0-121.7 154.7 9.3 14.2 1.1 66 61 A E H 3> S+ 0 0 38 -2,-0.3 4,-0.6 1,-0.3 34,-0.1 0.755 126.7 51.2 -46.9 -24.2 6.5 16.4 -0.6 67 62 A N H 3> S+ 0 0 33 2,-0.2 4,-1.3 3,-0.1 -1,-0.3 0.827 110.3 44.2 -84.7 -35.3 4.5 13.1 -0.7 68 63 A N H <> S+ 0 0 33 -3,-1.1 4,-2.6 2,-0.2 -2,-0.2 0.900 109.6 58.8 -68.0 -48.3 4.9 12.0 3.0 69 64 A M H X S+ 0 0 11 -4,-2.6 4,-2.4 1,-0.2 -2,-0.2 0.822 103.4 54.5 -53.1 -33.0 4.2 15.6 3.9 70 65 A S H X S+ 0 0 8 -4,-0.6 4,-1.3 -5,-0.4 -1,-0.2 0.932 107.4 44.2 -79.7 -38.2 0.8 15.2 2.1 71 66 A E H X S+ 0 0 109 -4,-1.3 4,-1.1 2,-0.2 3,-0.5 0.955 114.9 53.5 -68.5 -42.2 -0.5 12.1 3.9 72 67 A F H >< S+ 0 0 15 -4,-2.6 3,-1.0 1,-0.3 7,-0.2 0.906 108.6 47.2 -49.6 -57.4 0.6 13.7 7.1 73 68 A L H 3< S+ 0 0 13 -4,-2.4 17,-1.9 1,-0.3 -1,-0.3 0.719 102.3 65.3 -62.8 -22.6 -1.2 17.0 6.5 74 69 A T H 3< S- 0 0 46 -4,-1.3 -1,-0.3 -3,-0.5 -2,-0.2 0.907 131.7 -12.3 -66.3 -38.1 -4.3 15.2 5.6 75 70 A N S+ 0 0 0 0, 0.0 4,-2.6 0, 0.0 7,-0.1 0.903 87.0 42.7 -48.4 -54.4 -1.8 14.1 11.5 77 72 A X H 4 S+ 0 0 149 10,-0.4 6,-0.2 2,-0.2 5,-0.1 0.733 111.8 54.6 -69.1 -29.4 -2.9 11.8 14.3 78 73 A K H 4 S+ 0 0 174 -3,-0.2 -1,-0.2 -6,-0.2 -6,-0.1 0.855 115.6 41.6 -70.7 -35.8 -4.2 9.1 11.9 79 74 A Y H < S+ 0 0 53 -4,-1.9 -2,-0.2 1,-0.3 -1,-0.2 0.843 133.2 19.9 -82.0 -34.1 -0.7 9.1 10.3 80 75 A I S >< S- 0 0 2 -4,-2.6 3,-2.6 -5,-0.2 -1,-0.3 -0.792 81.6-156.4-137.5 81.6 1.3 9.3 13.6 81 76 A P T 3 S+ 0 0 95 0, 0.0 -3,-0.1 0, 0.0 3,-0.1 -0.501 82.7 32.9 -62.1 134.3 -0.9 8.1 16.4 82 77 A G T 3 S+ 0 0 57 1,-0.4 -26,-0.2 -2,-0.1 -25,-0.1 0.198 83.7 143.9 107.1 -19.3 0.4 9.7 19.6 83 78 A T < - 0 0 8 -3,-2.6 -1,-0.4 -6,-0.2 -6,-0.1 -0.260 48.0-147.0 -58.4 142.5 1.6 12.9 17.9 84 79 A K + 0 0 102 -3,-0.1 2,-0.6 2,-0.1 -1,-0.2 0.570 62.7 121.2 -83.3 -8.1 1.1 16.0 20.1 85 80 A M - 0 0 44 1,-0.1 2,-1.4 -9,-0.1 -8,-0.2 -0.424 54.6-154.8 -60.6 110.9 0.5 18.0 16.9 86 81 A A + 0 0 86 -2,-0.6 2,-0.4 -10,-0.1 -1,-0.1 -0.496 47.6 119.8 -93.6 80.2 -3.0 19.4 17.5 87 82 A F - 0 0 38 -2,-1.4 -10,-0.4 1,-0.2 3,-0.1 -0.998 53.8-149.5-141.3 125.1 -4.2 20.0 13.9 88 83 A G - 0 0 66 -2,-0.4 2,-0.2 1,-0.2 -11,-0.2 0.949 51.9-111.7 -62.5 -49.8 -7.3 18.3 12.4 89 84 A G - 0 0 10 -14,-0.2 2,-0.5 -13,-0.1 -15,-0.2 -0.696 13.8 -89.7 140.4 174.4 -5.9 18.3 8.8 90 85 A L - 0 0 8 -17,-1.9 6,-0.1 -2,-0.2 -15,-0.0 -0.991 35.9-174.0-123.4 97.6 -6.3 19.7 5.3 91 86 A K + 0 0 190 -2,-0.5 2,-0.4 4,-0.0 -1,-0.1 0.729 58.8 81.7 -70.7 -33.5 -8.8 17.4 3.5 92 87 A K > - 0 0 120 1,-0.1 4,-1.5 -18,-0.0 3,-0.2 -0.689 68.8-147.7 -83.3 129.9 -8.6 19.0 -0.0 93 88 A E H > S+ 0 0 107 -2,-0.4 4,-2.4 1,-0.2 5,-0.2 0.875 97.1 60.5 -62.4 -38.8 -5.6 17.9 -2.2 94 89 A K H > S+ 0 0 143 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.914 105.7 46.5 -58.3 -45.2 -5.5 21.3 -3.8 95 90 A D H > S+ 0 0 31 2,-0.2 4,-3.2 1,-0.2 -1,-0.2 0.889 112.4 51.0 -60.8 -38.9 -4.8 23.1 -0.4 96 91 A R H X S+ 0 0 33 -4,-1.5 4,-2.8 2,-0.2 5,-0.2 0.888 110.8 48.8 -63.2 -42.7 -2.2 20.6 0.5 97 92 A N H X S+ 0 0 15 -4,-2.4 4,-1.9 2,-0.2 -91,-0.6 0.905 111.4 48.3 -67.6 -47.0 -0.5 21.1 -2.9 98 93 A D H X S+ 0 0 17 -4,-2.6 4,-1.8 1,-0.2 -87,-0.3 0.954 114.5 47.5 -57.1 -53.1 -0.5 24.8 -2.5 99 94 A L H X S+ 0 0 3 -4,-3.2 4,-2.1 1,-0.2 3,-0.3 0.905 112.4 46.1 -56.5 -49.3 0.9 24.5 1.0 100 95 A I H X S+ 0 0 0 -4,-2.8 4,-3.4 1,-0.2 5,-0.3 0.806 108.7 58.6 -60.9 -30.4 3.7 22.0 0.2 101 96 A T H X S+ 0 0 25 -4,-1.9 4,-1.1 -5,-0.2 -1,-0.2 0.930 110.5 42.2 -63.0 -45.1 4.6 24.1 -2.8 102 97 A Y H X S+ 0 0 33 -4,-1.8 4,-3.7 -95,-0.3 -2,-0.2 0.884 117.1 47.3 -66.1 -46.9 5.2 27.1 -0.4 103 98 A L H X S+ 0 0 5 -4,-2.1 4,-2.7 2,-0.3 5,-0.3 0.954 105.6 56.0 -62.4 -57.5 7.0 24.9 2.1 104 99 A K H < S+ 0 0 78 -4,-3.4 -1,-0.2 1,-0.2 -2,-0.2 0.883 118.0 39.8 -44.8 -36.8 9.3 23.2 -0.3 105 100 A K H >< S+ 0 0 122 -4,-1.1 3,-0.7 -5,-0.3 -2,-0.3 0.953 117.7 42.3 -82.6 -47.9 10.3 26.7 -1.2 106 101 A A H 3< S+ 0 0 26 -4,-3.7 -2,-0.2 1,-0.2 -3,-0.2 0.712 110.7 55.0 -76.0 -23.3 10.4 28.6 2.1 107 102 A T T 3< 0 0 1 -4,-2.7 -68,-2.8 -5,-0.2 -1,-0.2 0.293 360.0 360.0 -88.4 -0.2 12.2 25.8 4.2 108 103 A E < 0 0 169 -3,-0.7 -1,-0.2 -5,-0.3 -2,-0.1 0.925 360.0 360.0 -79.8 360.0 15.1 25.6 1.7