==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 20-MAY-05 2CR7 . COMPND 2 MOLECULE: PAIRED AMPHIPATHIC HELIX PROTEIN SIN3B; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR K.NAGASHIMA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6581.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 70.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 17.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 47.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 136 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-105.4 22.3 10.6 10.2 2 2 A S - 0 0 113 2,-0.1 2,-0.5 0, 0.0 0, 0.0 -0.825 360.0-121.3-166.5 122.4 19.4 8.9 8.4 3 3 A S + 0 0 140 -2,-0.3 2,-0.2 2,-0.0 0, 0.0 -0.519 61.0 118.2 -69.0 117.5 15.7 8.4 9.4 4 4 A G - 0 0 63 -2,-0.5 2,-0.6 2,-0.0 -2,-0.1 -0.746 44.3-156.2 178.0 131.6 15.0 4.7 9.5 5 5 A S - 0 0 124 -2,-0.2 2,-0.2 0, 0.0 -2,-0.0 -0.898 18.7-168.4-121.1 102.4 13.9 2.0 12.0 6 6 A S + 0 0 129 -2,-0.6 -2,-0.0 1,-0.0 0, 0.0 -0.515 51.7 61.2 -87.0 155.8 14.9 -1.5 11.0 7 7 A G - 0 0 66 -2,-0.2 2,-0.6 1,-0.1 -1,-0.0 0.836 56.5-163.8 93.0 89.7 13.5 -4.6 12.8 8 8 A V - 0 0 96 2,-0.0 4,-0.1 4,-0.0 -1,-0.1 -0.917 15.6-134.9-110.3 115.5 9.7 -5.2 12.6 9 9 A H - 0 0 157 -2,-0.6 -2,-0.0 2,-0.2 0, 0.0 -0.183 33.8 -95.6 -62.1 157.2 8.2 -7.7 15.0 10 10 A V S S+ 0 0 138 1,-0.2 2,-2.0 2,-0.1 -1,-0.0 0.899 117.4 63.0 -35.9 -75.2 5.7 -10.2 13.7 11 11 A E + 0 0 162 1,-0.2 -1,-0.2 2,-0.1 -2,-0.2 -0.331 65.3 135.3 -58.7 83.0 2.6 -8.2 14.7 12 12 A D + 0 0 21 -2,-2.0 4,-0.3 -4,-0.1 -1,-0.2 -0.307 34.3 96.2-129.3 48.8 3.4 -5.3 12.3 13 13 A A S >> S+ 0 0 68 2,-0.1 4,-1.2 3,-0.1 3,-0.8 0.864 81.7 44.2 -99.8 -63.7 0.0 -4.6 10.7 14 14 A L H 3> S+ 0 0 114 1,-0.2 4,-2.5 2,-0.2 5,-0.3 0.800 100.4 78.0 -53.4 -29.6 -1.7 -1.8 12.6 15 15 A T H 3> S+ 0 0 66 1,-0.3 4,-1.6 2,-0.2 -1,-0.2 0.932 100.0 36.4 -44.7 -60.3 1.7 -0.1 12.5 16 16 A Y H <> S+ 0 0 19 -3,-0.8 4,-1.5 -4,-0.3 -1,-0.3 0.798 112.3 64.8 -65.4 -28.7 1.3 1.0 8.9 17 17 A L H >X S+ 0 0 61 -4,-1.2 4,-1.0 2,-0.2 3,-0.8 0.981 103.5 42.3 -57.8 -61.8 -2.4 1.6 9.6 18 18 A D H >X S+ 0 0 76 -4,-2.5 4,-2.2 1,-0.3 3,-1.6 0.923 105.9 64.6 -51.5 -50.0 -1.9 4.4 12.1 19 19 A Q H 3X S+ 0 0 101 -4,-1.6 4,-2.9 -5,-0.3 5,-0.3 0.868 97.3 56.8 -41.1 -46.7 0.8 6.0 9.9 20 20 A V H < S+ 0 0 94 -4,-2.2 3,-1.3 1,-0.2 4,-0.2 0.951 113.6 44.9 -58.8 -52.6 -0.9 10.6 11.0 23 23 A R H 3< S+ 0 0 173 -4,-2.9 3,-0.3 1,-0.3 2,-0.3 0.916 120.0 41.7 -58.4 -45.6 0.1 11.6 7.5 24 24 A F T 3< S+ 0 0 14 -4,-2.0 7,-0.3 -5,-0.3 -1,-0.3 -0.261 80.2 123.6 -97.5 45.6 -3.4 12.3 6.5 25 25 A G S < S+ 0 0 48 -3,-1.3 -1,-0.2 -2,-0.3 -2,-0.1 0.968 78.6 37.3 -69.3 -54.8 -4.3 14.1 9.8 26 26 A S S S+ 0 0 129 -3,-0.3 -1,-0.2 -4,-0.2 3,-0.2 0.619 116.9 60.9 -72.7 -12.0 -5.4 17.4 8.4 27 27 A D >> + 0 0 75 -6,-0.2 4,-1.1 1,-0.1 3,-0.5 -0.733 55.7 160.4-119.4 81.7 -7.0 15.5 5.5 28 28 A P H 3> + 0 0 78 0, 0.0 4,-2.7 0, 0.0 5,-0.2 0.785 69.5 71.1 -69.8 -28.4 -9.6 13.2 7.0 29 29 A A H 3> S+ 0 0 68 1,-0.2 4,-1.6 2,-0.2 -2,-0.1 0.871 99.3 48.0 -56.1 -38.9 -11.3 12.9 3.6 30 30 A T H <> S+ 0 0 27 -3,-0.5 4,-1.4 2,-0.2 -1,-0.2 0.931 110.8 49.3 -68.6 -47.3 -8.4 10.8 2.4 31 31 A Y H X S+ 0 0 43 -4,-1.1 4,-1.8 -7,-0.3 3,-0.4 0.920 106.4 57.9 -58.3 -46.3 -8.3 8.5 5.4 32 32 A N H >X S+ 0 0 90 -4,-2.7 4,-1.6 1,-0.3 3,-0.7 0.950 102.6 52.0 -48.9 -60.1 -12.1 7.9 5.1 33 33 A G H 3X S+ 0 0 29 -4,-1.6 4,-2.2 1,-0.3 -1,-0.3 0.847 106.8 55.8 -46.4 -39.4 -11.8 6.5 1.6 34 34 A F H 3X S+ 0 0 13 -4,-1.4 4,-2.0 -3,-0.4 -1,-0.3 0.917 101.2 56.5 -61.4 -45.2 -9.1 4.1 2.8 35 35 A L H X S+ 0 0 56 -4,-2.0 4,-2.4 1,-0.2 3,-1.0 0.954 101.0 61.5 -58.1 -53.5 -10.4 -2.2 3.3 39 39 A K H 3X S+ 0 0 119 -4,-1.6 4,-1.0 1,-0.3 -1,-0.2 0.878 97.6 59.7 -39.4 -51.3 -14.1 -3.3 3.9 40 40 A E H ><>S+ 0 0 66 -4,-1.6 5,-2.3 1,-0.2 3,-0.9 0.907 110.1 41.0 -45.5 -51.3 -14.2 -4.5 0.3 41 41 A F H X<5S+ 0 0 88 -4,-1.0 3,-2.1 -3,-1.0 -1,-0.2 0.902 110.6 56.5 -65.8 -42.2 -11.4 -6.9 1.0 42 42 A K H 3<5S+ 0 0 167 -4,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.584 106.0 54.6 -66.2 -8.2 -12.8 -7.9 4.4 43 43 A S T <<5S- 0 0 85 -4,-1.0 -1,-0.3 -3,-0.9 -2,-0.2 0.151 117.8-111.8-110.2 16.0 -15.9 -8.8 2.5 44 44 A Q T < 5S+ 0 0 192 -3,-2.1 -3,-0.2 -5,-0.1 -2,-0.1 0.838 87.0 119.3 56.8 34.2 -14.2 -11.2 0.1 45 45 A S S > - 0 0 117 -2,-0.2 4,-2.1 -3,-0.1 3,-1.9 -0.568 41.9 -80.9-115.5-179.7 -8.0 -9.6 -3.6 48 48 A T H >> S+ 0 0 84 1,-0.3 4,-1.1 2,-0.2 3,-0.5 0.931 133.7 41.6 -45.0 -58.2 -4.5 -8.6 -2.7 49 49 A P H 3> S+ 0 0 98 0, 0.0 4,-0.5 0, 0.0 -1,-0.3 0.529 112.4 60.3 -69.8 -5.0 -3.8 -7.0 -6.1 50 50 A G H <> S+ 0 0 18 -3,-1.9 4,-0.9 2,-0.2 -2,-0.2 0.816 100.4 49.2 -91.5 -35.6 -7.3 -5.6 -5.9 51 51 A V H < S+ 0 0 148 -4,-1.3 3,-1.2 -5,-0.2 -1,-0.3 0.895 114.6 51.1 -55.7 -42.7 -5.4 6.2 -6.4 58 58 A L H >< S+ 0 0 32 -4,-2.1 3,-0.5 1,-0.3 2,-0.2 0.982 118.1 34.6 -59.3 -61.2 -6.1 7.2 -2.8 59 59 A F G >< S+ 0 0 0 -4,-3.0 3,-2.0 1,-0.2 7,-0.4 -0.098 80.1 131.1 -86.9 36.7 -2.4 7.9 -1.9 60 60 A H G < S+ 0 0 123 -3,-1.2 -1,-0.2 1,-0.3 -2,-0.1 0.864 74.4 49.5 -56.5 -37.5 -1.8 9.2 -5.4 61 61 A E G < S+ 0 0 139 -3,-0.5 -1,-0.3 1,-0.2 3,-0.1 0.440 109.9 58.8 -81.7 0.4 -0.1 12.3 -3.9 62 62 A H <> + 0 0 48 -3,-2.0 4,-1.7 -6,-0.2 3,-0.4 -0.712 53.8 162.8-133.4 82.7 1.9 9.9 -1.7 63 63 A P H > S+ 0 0 75 0, 0.0 4,-1.7 0, 0.0 5,-0.2 0.756 76.8 63.2 -69.8 -25.2 4.0 7.5 -3.8 64 64 A D H > S+ 0 0 133 2,-0.2 4,-1.7 1,-0.2 5,-0.1 0.833 107.0 42.9 -68.7 -33.0 6.2 6.7 -0.8 65 65 A L H > S+ 0 0 19 -3,-0.4 4,-2.5 -6,-0.2 5,-0.2 0.902 109.1 56.0 -79.1 -44.2 3.2 5.3 1.1 66 66 A I H X S+ 0 0 25 -4,-1.7 4,-1.1 -7,-0.4 -2,-0.2 0.891 116.9 37.1 -54.8 -42.5 1.8 3.3 -1.9 67 67 A V H X S+ 0 0 100 -4,-1.7 4,-1.5 2,-0.2 5,-0.3 0.902 111.3 59.3 -77.3 -43.9 5.1 1.5 -2.3 68 68 A G H X S+ 0 0 31 -4,-1.7 4,-3.3 -5,-0.2 -2,-0.2 0.906 103.0 53.4 -51.2 -47.3 5.9 1.2 1.4 69 69 A F H X S+ 0 0 31 -4,-2.5 4,-3.2 2,-0.2 -1,-0.2 0.961 101.4 58.6 -53.1 -58.8 2.7 -0.7 2.0 70 70 A N H < S+ 0 0 74 -4,-1.1 -1,-0.2 1,-0.2 -2,-0.2 0.889 117.1 32.6 -35.6 -64.5 3.5 -3.3 -0.7 71 71 A A H < S+ 0 0 86 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.942 113.5 61.7 -61.6 -50.0 6.7 -4.3 1.0 72 72 A F H < S+ 0 0 66 -4,-3.3 -2,-0.2 -5,-0.3 -1,-0.2 0.895 80.2 105.2 -42.3 -51.7 5.4 -3.6 4.5 73 73 A L S < S- 0 0 59 -4,-3.2 -60,-0.1 -5,-0.2 -3,-0.0 0.062 70.3-140.9 -34.1 135.6 2.8 -6.3 4.0 74 74 A P S S+ 0 0 87 0, 0.0 4,-0.2 0, 0.0 -1,-0.1 0.943 77.2 81.2 -69.8 -50.4 3.7 -9.5 6.0 75 75 A S + 0 0 108 2,-0.1 5,-0.0 1,-0.0 0, 0.0 -0.088 60.6 106.6 -54.9 157.0 2.6 -12.0 3.4 76 76 A G S S- 0 0 54 2,-0.2 -1,-0.0 4,-0.1 -5,-0.0 -0.991 82.9 -40.7 162.9-164.5 4.9 -12.8 0.5 77 77 A P S S+ 0 0 144 0, 0.0 3,-0.1 0, 0.0 -2,-0.1 0.537 96.3 115.2 -69.7 -5.6 7.4 -15.3 -1.0 78 78 A S S S- 0 0 88 -4,-0.2 -2,-0.2 1,-0.2 0, 0.0 -0.196 86.0 -64.6 -63.8 157.8 8.6 -16.0 2.5 79 79 A S 0 0 138 1,-0.1 -1,-0.2 0, 0.0 -3,-0.1 -0.043 360.0 360.0 -42.6 140.5 8.1 -19.4 4.0 80 80 A G 0 0 123 -3,-0.1 -1,-0.1 -5,-0.0 -4,-0.1 0.720 360.0 360.0 117.6 360.0 4.4 -20.2 4.5