==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 20-MAY-05 2CRA . COMPND 2 MOLECULE: HOMEOBOX PROTEIN HOX-B13; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.SEIMIYA,F.HAYASHI,T.NAGASHIMA,M.YOSHIDA,S.YOKOYAMA,RIKEN . 70 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6193.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 58.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 42.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 119 0, 0.0 3,-0.1 0, 0.0 4,-0.0 0.000 360.0 360.0 360.0 -47.3 -26.7 9.6 10.3 2 2 A S + 0 0 133 1,-0.5 2,-0.3 0, 0.0 3,-0.1 0.589 360.0 6.8-130.1 -47.8 -27.3 9.4 14.1 3 3 A S S S+ 0 0 108 1,-0.1 -1,-0.5 0, 0.0 3,-0.1 -0.913 104.1 47.9-139.0 165.1 -29.7 6.5 14.8 4 4 A G S S+ 0 0 87 -2,-0.3 2,-0.5 1,-0.3 -1,-0.1 0.747 76.0 134.8 76.0 23.8 -31.4 3.7 12.9 5 5 A S - 0 0 73 1,-0.1 -1,-0.3 -3,-0.1 0, 0.0 -0.925 54.9-146.4-111.6 126.1 -28.1 2.7 11.3 6 6 A S - 0 0 122 -2,-0.5 -1,-0.1 1,-0.1 -2,-0.1 0.869 66.9 -79.7 -53.9 -39.1 -27.1 -1.0 11.1 7 7 A G + 0 0 50 -3,-0.1 -1,-0.1 1,-0.0 -3,-0.0 0.484 64.9 158.9 132.9 75.7 -23.5 0.1 11.4 8 8 A R + 0 0 180 3,-0.0 3,-0.3 2,-0.0 2,-0.2 -0.127 48.7 104.6-110.9 34.9 -21.6 1.4 8.3 9 9 A K + 0 0 152 1,-0.2 0, 0.0 2,-0.0 0, 0.0 -0.654 64.1 33.0-111.2 168.9 -19.0 3.3 10.3 10 10 A K S S+ 0 0 190 -2,-0.2 -1,-0.2 2,-0.1 -2,-0.0 0.839 83.5 168.7 55.6 34.5 -15.3 2.6 11.0 11 11 A R - 0 0 182 -3,-0.3 -1,-0.1 1,-0.2 -3,-0.0 0.109 47.1 -39.4 -64.9-174.2 -15.1 1.0 7.5 12 12 A I - 0 0 139 1,-0.1 -1,-0.2 2,-0.0 -2,-0.1 -0.196 68.0-134.8 -51.9 135.2 -11.8 -0.0 5.8 13 13 A P + 0 0 74 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.007 64.4 72.2 -80.1-170.0 -9.1 2.6 6.4 14 14 A Y S S- 0 0 37 4,-0.1 30,-0.0 30,-0.0 -2,-0.0 0.840 75.9-117.0 64.0 110.9 -6.6 4.0 3.8 15 15 A S >> - 0 0 76 29,-0.1 4,-2.9 1,-0.1 3,-0.8 -0.184 29.8 -98.6 -71.3 167.9 -8.2 6.5 1.4 16 16 A K H 3> S+ 0 0 186 1,-0.3 4,-1.2 2,-0.2 -1,-0.1 0.844 126.5 54.0 -55.9 -35.0 -8.3 5.9 -2.4 17 17 A G H 34 S+ 0 0 45 2,-0.2 4,-0.5 1,-0.2 -1,-0.3 0.799 112.5 43.0 -70.8 -28.8 -5.3 8.1 -2.7 18 18 A Q H X> S+ 0 0 46 -3,-0.8 4,-1.4 2,-0.2 3,-1.0 0.926 115.0 45.7 -81.5 -50.1 -3.3 6.0 -0.2 19 19 A L H 3X S+ 0 0 30 -4,-2.9 4,-3.2 1,-0.2 5,-0.4 0.742 100.1 73.7 -65.0 -22.6 -4.3 2.6 -1.4 20 20 A R H 3X S+ 0 0 170 -4,-1.2 4,-1.1 -5,-0.4 -1,-0.2 0.878 103.7 37.4 -58.6 -39.4 -3.6 3.8 -4.9 21 21 A E H <> S+ 0 0 61 -3,-1.0 4,-2.3 -4,-0.5 -1,-0.2 0.838 117.6 51.3 -81.1 -35.8 0.2 3.6 -4.2 22 22 A L H X S+ 0 0 0 -4,-1.4 4,-2.8 2,-0.2 -2,-0.2 0.966 110.2 46.9 -65.6 -54.5 -0.1 0.5 -2.1 23 23 A E H X S+ 0 0 99 -4,-3.2 4,-2.7 1,-0.2 5,-0.2 0.914 113.8 49.8 -53.8 -46.8 -2.0 -1.6 -4.6 24 24 A R H X S+ 0 0 178 -4,-1.1 4,-1.2 -5,-0.4 -1,-0.2 0.954 112.8 45.1 -58.1 -53.4 0.4 -0.5 -7.4 25 25 A E H X S+ 0 0 28 -4,-2.3 4,-1.7 1,-0.2 -1,-0.2 0.872 112.6 53.6 -59.0 -38.4 3.5 -1.3 -5.4 26 26 A Y H < S+ 0 0 18 -4,-2.8 3,-0.3 1,-0.2 -2,-0.2 0.947 102.4 55.4 -62.2 -50.7 1.9 -4.6 -4.4 27 27 A A H < S+ 0 0 84 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.811 111.2 47.3 -52.5 -31.5 1.1 -5.7 -7.9 28 28 A A H < S- 0 0 74 -4,-1.2 2,-0.3 1,-0.3 -1,-0.3 0.824 134.0 -0.3 -79.9 -33.9 4.9 -5.2 -8.6 29 29 A N < - 0 0 58 -4,-1.7 -1,-0.3 -3,-0.3 -2,-0.0 -0.900 53.6-144.1-161.0 127.4 6.0 -7.1 -5.5 30 30 A K S S+ 0 0 86 -2,-0.3 2,-0.4 -3,-0.2 29,-0.2 0.788 97.6 38.8 -60.8 -27.5 4.1 -8.9 -2.7 31 31 A F S S- 0 0 109 -5,-0.1 -1,-0.1 -6,-0.1 2,-0.1 -0.991 74.6-161.9-130.1 132.3 6.8 -7.7 -0.4 32 32 A I - 0 0 39 -2,-0.4 2,-0.2 1,-0.1 -2,-0.0 -0.388 14.1-122.9-101.2-178.9 8.6 -4.4 -0.3 33 33 A T > - 0 0 76 -2,-0.1 4,-3.3 1,-0.0 5,-0.3 -0.718 35.3 -92.0-121.3 172.4 11.9 -3.2 1.2 34 34 A K H > S+ 0 0 135 -2,-0.2 4,-1.4 1,-0.2 5,-0.1 0.829 125.4 53.0 -51.7 -33.9 13.0 -0.5 3.7 35 35 A D H >> S+ 0 0 99 2,-0.2 4,-1.9 3,-0.1 3,-0.5 0.997 115.0 34.8 -65.9 -66.9 13.6 1.7 0.6 36 36 A K H 3> S+ 0 0 72 1,-0.3 4,-2.7 2,-0.2 5,-0.3 0.920 116.2 56.8 -54.3 -47.6 10.2 1.4 -1.1 37 37 A R H 3X S+ 0 0 45 -4,-3.3 4,-1.5 1,-0.2 -1,-0.3 0.860 107.2 50.0 -53.0 -37.9 8.4 1.2 2.3 38 38 A R H X S+ 0 0 139 -4,-1.9 3,-1.5 1,-0.2 4,-1.3 0.950 108.7 51.2 -63.3 -51.0 8.9 6.1 -0.2 40 40 A I H 3X>S+ 0 0 4 -4,-2.7 4,-2.8 1,-0.3 5,-0.6 0.865 104.7 58.4 -54.7 -38.2 5.3 5.0 0.2 41 41 A S H 3<5S+ 0 0 37 -4,-1.5 -1,-0.3 -5,-0.3 -2,-0.2 0.759 106.0 50.0 -64.0 -24.4 5.3 6.5 3.7 42 42 A A H <<5S+ 0 0 85 -3,-1.5 -1,-0.2 -4,-0.7 -2,-0.2 0.738 119.3 36.2 -85.0 -25.6 6.2 9.8 2.1 43 43 A A H <5S+ 0 0 62 -4,-1.3 -2,-0.2 -3,-0.4 -3,-0.2 0.922 127.3 32.0 -90.0 -60.4 3.4 9.6 -0.5 44 44 A T T <5S- 0 0 5 -4,-2.8 -3,-0.2 -26,-0.1 -29,-0.1 0.606 100.2-132.6 -73.8 -11.1 0.5 7.9 1.3 45 45 A S < + 0 0 99 -5,-0.6 -4,-0.2 1,-0.2 2,-0.2 0.780 60.4 138.6 63.4 26.6 1.7 9.7 4.5 46 46 A L - 0 0 11 -6,-0.5 2,-0.2 1,-0.1 -1,-0.2 -0.499 57.9 -95.7 -98.2 169.8 1.4 6.3 6.3 47 47 A S > - 0 0 71 -2,-0.2 4,-2.5 1,-0.1 5,-0.3 -0.577 28.5-117.9 -86.5 148.5 3.7 4.6 8.8 48 48 A E H > S+ 0 0 84 1,-0.2 4,-1.1 -2,-0.2 -1,-0.1 0.811 118.8 46.7 -52.1 -31.4 6.3 2.1 7.8 49 49 A R H > S+ 0 0 179 2,-0.2 4,-2.8 3,-0.1 -1,-0.2 0.926 108.0 53.1 -77.4 -48.3 4.4 -0.4 9.9 50 50 A Q H > S+ 0 0 83 1,-0.2 4,-1.9 2,-0.2 -2,-0.2 0.931 109.3 49.6 -52.4 -51.4 0.9 0.5 8.6 51 51 A I H X S+ 0 0 0 -4,-2.5 4,-2.2 1,-0.2 -1,-0.2 0.901 111.5 49.9 -55.7 -43.7 2.0 -0.1 5.0 52 52 A T H X S+ 0 0 41 -4,-1.1 4,-2.5 -5,-0.3 -2,-0.2 0.949 106.4 53.7 -61.1 -51.5 3.5 -3.4 6.0 53 53 A I H X S+ 0 0 81 -4,-2.8 4,-2.3 1,-0.2 -1,-0.2 0.861 110.8 48.6 -51.8 -38.6 0.4 -4.7 7.8 54 54 A W H X S+ 0 0 30 -4,-1.9 4,-1.6 -5,-0.2 -1,-0.2 0.920 110.0 49.7 -68.9 -45.2 -1.6 -3.9 4.7 55 55 A F H X S+ 0 0 8 -4,-2.2 4,-1.1 1,-0.2 -2,-0.2 0.838 112.7 49.6 -62.8 -33.4 0.8 -5.7 2.3 56 56 A Q H >X S+ 0 0 87 -4,-2.5 4,-3.2 2,-0.2 3,-0.6 0.953 108.2 49.7 -70.7 -51.8 0.7 -8.7 4.6 57 57 A N H 3X S+ 0 0 107 -4,-2.3 4,-1.3 1,-0.3 -2,-0.2 0.807 106.7 59.6 -57.3 -30.0 -3.1 -8.9 4.9 58 58 A R H 3< S+ 0 0 96 -4,-1.6 -1,-0.3 2,-0.2 4,-0.2 0.889 115.1 32.8 -66.4 -40.3 -3.1 -8.7 1.1 59 59 A R H X< S+ 0 0 70 -4,-1.1 3,-2.5 -3,-0.6 -2,-0.2 0.939 116.2 53.4 -81.1 -53.2 -1.0 -11.9 0.8 60 60 A V H >X S+ 0 0 52 -4,-3.2 3,-2.8 1,-0.3 4,-1.9 0.794 93.4 76.3 -52.5 -29.1 -2.3 -13.8 3.8 61 61 A K T 3< S+ 0 0 123 -4,-1.3 -1,-0.3 -5,-0.4 -2,-0.2 0.814 103.0 37.5 -52.7 -31.5 -5.8 -13.3 2.4 62 62 A E T <4 S+ 0 0 120 -3,-2.5 -1,-0.3 -4,-0.2 -2,-0.2 -0.028 112.7 61.1-110.4 28.2 -4.9 -16.0 -0.1 63 63 A K T <4 S+ 0 0 132 -3,-2.8 -2,-0.2 3,-0.1 -3,-0.1 0.685 92.7 61.1-118.5 -42.8 -3.0 -18.1 2.4 64 64 A K S < S- 0 0 165 -4,-1.9 2,-1.2 2,-0.1 0, 0.0 -0.354 100.6 -85.4 -84.8 168.2 -5.5 -19.0 5.1 65 65 A S S S+ 0 0 135 1,-0.1 -1,-0.1 -2,-0.1 -3,-0.1 -0.613 101.1 74.2 -77.9 96.3 -8.7 -21.0 4.7 66 66 A G > + 0 0 20 -2,-1.2 3,-0.8 -5,-0.1 -2,-0.1 0.147 37.9 165.1 158.1 72.2 -11.2 -18.4 3.7 67 67 A P T 3 S+ 0 0 102 0, 0.0 -2,-0.1 0, 0.0 -3,-0.0 0.858 90.4 30.7 -69.8 -36.9 -11.1 -16.9 0.2 68 68 A S T 3 S+ 0 0 121 2,-0.0 2,-0.5 0, 0.0 0, 0.0 -0.399 91.0 124.7-120.1 54.0 -14.6 -15.3 0.5 69 69 A S < 0 0 94 -3,-0.8 -3,-0.0 1,-0.1 0, 0.0 -0.961 360.0 360.0-119.2 124.2 -14.7 -14.6 4.2 70 70 A G 0 0 133 -2,-0.5 -1,-0.1 0, 0.0 -2,-0.0 0.060 360.0 360.0 179.4 360.0 -15.4 -11.2 5.6