==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM 20-MAY-05 2CRN . COMPND 2 MOLECULE: UBASH3A PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.IZUMI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4683.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 32 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 32.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 122 0, 0.0 2,-0.9 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 163.5 -20.8 -12.2 -1.6 2 2 A S + 0 0 137 2,-0.0 0, 0.0 0, 0.0 0, 0.0 -0.152 360.0 156.3 -82.8 42.0 -18.3 -14.2 -3.5 3 3 A S - 0 0 83 -2,-0.9 2,-0.4 1,-0.1 3,-0.2 -0.270 33.3-136.6 -67.5 155.2 -17.6 -11.2 -5.7 4 4 A G S S- 0 0 52 1,-0.2 3,-0.1 0, 0.0 -1,-0.1 -0.924 72.1 -7.3-120.0 143.4 -14.2 -10.9 -7.5 5 5 A S S S+ 0 0 138 -2,-0.4 2,-1.1 1,-0.2 -1,-0.2 0.870 81.8 163.4 43.0 45.0 -11.9 -7.9 -7.8 6 6 A S + 0 0 87 -3,-0.2 -1,-0.2 1,-0.1 -3,-0.1 -0.747 24.6 110.5 -97.2 90.5 -14.6 -5.8 -6.2 7 7 A G + 0 0 64 -2,-1.1 -1,-0.1 -3,-0.1 4,-0.1 -0.228 24.0 119.6-158.1 58.8 -12.9 -2.6 -5.2 8 8 A S + 0 0 127 2,-0.1 -2,-0.1 3,-0.0 3,-0.0 0.842 59.0 79.8 -91.9 -41.1 -14.0 0.4 -7.2 9 9 A S S S- 0 0 96 1,-0.1 2,-0.6 2,-0.0 0, 0.0 -0.387 94.8-100.5 -70.0 144.5 -15.4 2.6 -4.4 10 10 A P + 0 0 84 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.535 67.7 131.7 -69.7 112.0 -13.0 4.5 -2.2 11 11 A S S S+ 0 0 80 -2,-0.6 3,-0.1 -4,-0.1 -4,-0.0 0.619 77.6 19.0-123.1 -70.8 -12.5 2.6 1.0 12 12 A L S > S+ 0 0 54 1,-0.2 4,-1.3 2,-0.2 5,-0.1 0.701 121.7 62.2 -79.5 -20.7 -8.9 2.2 2.1 13 13 A L H > S+ 0 0 26 2,-0.2 4,-2.4 1,-0.2 5,-0.4 0.821 85.4 76.0 -73.5 -32.0 -7.8 5.0 -0.2 14 14 A E H > S+ 0 0 128 1,-0.2 4,-2.6 2,-0.2 3,-0.3 0.922 106.6 31.6 -42.4 -58.7 -9.9 7.5 1.7 15 15 A P H > S+ 0 0 46 0, 0.0 4,-1.1 0, 0.0 -1,-0.2 0.876 120.5 51.7 -69.7 -39.5 -7.3 7.6 4.6 16 16 A L H < S+ 0 0 0 -4,-1.3 5,-0.4 1,-0.2 -2,-0.2 0.639 115.9 44.1 -72.8 -13.8 -4.4 7.0 2.3 17 17 A L H >< S+ 0 0 68 -4,-2.4 3,-1.2 -3,-0.3 -3,-0.2 0.846 108.6 52.1 -96.0 -45.5 -5.6 9.9 0.1 18 18 A A H 3< S+ 0 0 92 -4,-2.6 -2,-0.2 -5,-0.4 -4,-0.1 0.735 103.4 62.8 -63.6 -22.0 -6.5 12.4 2.8 19 19 A M T 3< S- 0 0 120 -4,-1.1 -1,-0.3 -5,-0.2 -2,-0.1 0.755 124.1-102.0 -74.4 -25.0 -3.0 11.9 4.2 20 20 A G S < S+ 0 0 61 -3,-1.2 -3,-0.1 1,-0.4 -2,-0.1 0.014 80.8 127.0 127.6 -28.0 -1.5 13.2 0.9 21 21 A F - 0 0 20 -5,-0.4 -1,-0.4 1,-0.1 -2,-0.1 -0.335 55.8-125.5 -64.1 140.8 -0.5 10.0 -0.8 22 22 A P > - 0 0 36 0, 0.0 4,-1.1 0, 0.0 -1,-0.1 0.210 24.0-100.5 -69.8-163.8 -1.8 9.5 -4.3 23 23 A V H > S+ 0 0 74 2,-0.2 4,-2.8 3,-0.2 5,-0.3 0.925 116.4 50.5 -88.5 -57.5 -3.7 6.6 -5.7 24 24 A H H > S+ 0 0 118 1,-0.2 4,-1.3 2,-0.2 -1,-0.1 0.852 119.3 42.0 -49.4 -37.9 -1.1 4.5 -7.5 25 25 A T H > S+ 0 0 8 2,-0.2 4,-2.0 1,-0.2 3,-0.4 0.968 111.8 50.4 -74.9 -57.0 1.0 4.7 -4.3 26 26 A A H X S+ 0 0 0 -4,-1.1 4,-1.7 1,-0.3 -2,-0.2 0.820 111.0 53.6 -50.9 -33.0 -1.7 4.2 -1.7 27 27 A L H X S+ 0 0 76 -4,-2.8 4,-2.9 2,-0.2 5,-0.3 0.906 104.8 52.8 -69.9 -42.9 -2.7 1.1 -3.8 28 28 A K H X S+ 0 0 102 -4,-1.3 4,-1.9 -3,-0.4 -2,-0.2 0.942 111.2 45.6 -57.8 -50.7 0.8 -0.3 -3.7 29 29 A A H X S+ 0 0 0 -4,-2.0 4,-2.8 2,-0.2 5,-0.2 0.878 113.8 51.2 -61.0 -39.0 1.1 -0.1 0.0 30 30 A L H X>S+ 0 0 5 -4,-1.7 4,-2.8 -5,-0.3 5,-2.8 0.977 112.0 43.1 -62.8 -58.1 -2.4 -1.6 0.4 31 31 A A H <5S+ 0 0 73 -4,-2.9 -1,-0.2 3,-0.2 -2,-0.2 0.794 116.3 52.3 -58.8 -28.5 -1.8 -4.6 -1.9 32 32 A A H <5S+ 0 0 54 -4,-1.9 -2,-0.2 -5,-0.3 -1,-0.2 0.933 114.4 38.4 -73.8 -48.5 1.5 -5.0 -0.1 33 33 A T H <5S- 0 0 17 -4,-2.8 -2,-0.2 -5,-0.2 -3,-0.2 0.771 119.3-108.8 -73.3 -26.5 0.2 -5.0 3.4 34 34 A G T <5 - 0 0 45 -4,-2.8 -3,-0.2 -5,-0.2 -4,-0.1 0.771 51.5 -78.1 101.4 34.6 -2.8 -7.0 2.4 35 35 A R S - 0 0 60 1,-0.1 4,-1.5 -7,-0.1 -1,-0.3 -0.959 53.7-104.1-171.3 155.1 -5.9 -1.3 7.4 38 38 A A H > S+ 0 0 19 -2,-0.3 4,-1.4 1,-0.2 3,-0.4 0.916 119.3 55.3 -50.6 -49.4 -5.0 2.2 6.4 39 39 A E H >> S+ 0 0 157 1,-0.2 4,-1.7 2,-0.2 3,-0.6 0.920 101.1 58.4 -50.9 -49.6 -2.3 2.4 9.1 40 40 A E H 3> S+ 0 0 67 1,-0.3 4,-1.4 2,-0.2 3,-0.4 0.903 101.6 55.3 -47.4 -48.6 -0.7 -0.7 7.7 41 41 A A H 3X S+ 0 0 0 -4,-1.5 4,-2.1 -3,-0.4 3,-0.5 0.891 104.2 54.2 -53.2 -43.2 -0.3 1.0 4.3 42 42 A L H S- 0 0 82 -2,-1.4 3,-1.0 3,-0.4 -3,-0.0 -0.950 73.6-129.2-166.1 144.1 14.4 4.1 -1.6 52 52 A P T 3 S+ 0 0 121 0, 0.0 3,-0.2 0, 0.0 -3,-0.0 0.629 111.9 56.4 -69.8 -13.4 16.2 5.0 -4.8 53 53 A S T 3 S+ 0 0 96 1,-0.2 2,-0.6 -5,-0.1 -4,-0.1 0.609 100.9 61.0 -92.6 -15.4 14.0 2.6 -6.7 54 54 A L S < S- 0 0 41 -3,-1.0 2,-0.7 -6,-0.2 -3,-0.4 -0.768 72.3-166.6-116.3 85.4 10.8 4.3 -5.6 55 55 A D + 0 0 140 -2,-0.6 -5,-0.1 -3,-0.2 -6,-0.1 -0.608 28.0 144.6 -75.1 113.3 10.8 7.9 -6.8 56 56 A D - 0 0 60 -2,-0.7 -2,-0.1 -7,-0.3 0, 0.0 -0.976 61.7-115.4-148.1 159.1 8.1 9.9 -4.9 57 57 A P S S+ 0 0 110 0, 0.0 2,-1.8 0, 0.0 -2,-0.0 0.618 81.1 113.7 -69.8 -12.4 7.4 13.3 -3.4 58 58 A I - 0 0 51 1,-0.1 2,-0.2 -13,-0.0 -2,-0.1 -0.425 62.9-151.5 -64.8 86.7 7.3 11.7 0.0 59 59 A S - 0 0 112 -2,-1.8 -9,-0.1 1,-0.1 3,-0.1 -0.440 13.6-159.1 -64.9 125.0 10.4 13.4 1.4 60 60 A G - 0 0 39 -2,-0.2 -1,-0.1 1,-0.2 -14,-0.0 0.036 32.5 -51.3 -88.9-160.0 12.1 11.2 4.0 61 61 A P - 0 0 78 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.110 61.5 -92.5 -69.7 171.4 14.5 11.9 6.9 62 62 A S S S+ 0 0 137 2,-0.2 -2,-0.1 1,-0.2 0, 0.0 0.945 127.4 31.4 -49.5 -57.5 17.7 13.9 6.5 63 63 A S 0 0 128 1,-0.2 -1,-0.2 0, 0.0 -3,-0.1 0.971 360.0 360.0 -67.2 -55.9 19.8 10.7 6.0 64 64 A G 0 0 64 -5,-0.0 -2,-0.2 -13,-0.0 -1,-0.2 0.697 360.0 360.0 -67.2 360.0 17.1 8.7 4.3