==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION 20-MAY-05 2CRQ . COMPND 2 MOLECULE: MITOCHONDRIAL TRANSLATIONAL INITIATION FACTOR 3; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 112 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8517.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 77 68.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 8 7.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 14.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 23.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 135 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 140.2 -28.4 -13.6 -9.5 2 2 A S + 0 0 132 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.971 360.0 170.4-126.6 139.4 -27.0 -11.0 -7.1 3 3 A S + 0 0 131 -2,-0.4 2,-0.1 1,-0.0 0, 0.0 -0.922 26.1 106.2-151.2 120.6 -28.6 -9.6 -3.9 4 4 A G + 0 0 78 -2,-0.3 2,-0.4 1,-0.0 -1,-0.0 -0.351 21.1 171.2 165.4 109.3 -27.0 -7.4 -1.3 5 5 A S + 0 0 117 1,-0.2 -1,-0.0 -2,-0.1 0, 0.0 -0.813 1.2 174.9-134.4 93.7 -27.4 -3.7 -0.4 6 6 A S - 0 0 133 -2,-0.4 -1,-0.2 1,-0.1 0, 0.0 0.967 52.8-100.7 -60.5 -55.9 -25.8 -2.6 2.8 7 7 A G - 0 0 43 2,-0.1 2,-0.9 0, 0.0 -1,-0.1 -0.414 30.7 -75.1 138.5 145.2 -26.5 1.1 2.4 8 8 A P + 0 0 138 0, 0.0 2,-0.4 0, 0.0 -3,-0.0 -0.531 61.8 153.6 -69.8 102.3 -24.9 4.4 1.3 9 9 A K - 0 0 173 -2,-0.9 -2,-0.1 1,-0.1 -3,-0.0 -0.950 34.2-166.3-138.0 115.9 -22.7 5.4 4.2 10 10 A T - 0 0 106 -2,-0.4 -1,-0.1 1,-0.1 0, 0.0 0.782 49.6-124.9 -68.5 -27.0 -19.6 7.6 3.8 11 11 A G - 0 0 26 2,-0.1 -1,-0.1 33,-0.0 3,-0.0 0.054 22.5 -75.3 96.3 152.4 -18.5 6.6 7.3 12 12 A P - 0 0 90 0, 0.0 2,-1.3 0, 0.0 -3,-0.0 0.085 64.3 -71.1 -69.7-173.1 -17.7 8.6 10.5 13 13 A T S S+ 0 0 151 31,-0.1 2,-0.3 2,-0.0 -2,-0.1 -0.676 79.1 135.8 -88.0 89.3 -14.5 10.5 11.1 14 14 A M - 0 0 87 -2,-1.3 31,-0.6 -3,-0.0 2,-0.4 -0.964 36.7-154.3-135.9 152.2 -11.9 7.8 11.6 15 15 A T E -a 45 0A 91 -2,-0.3 2,-0.3 29,-0.1 31,-0.2 -0.976 6.4-154.4-129.7 141.9 -8.3 7.1 10.4 16 16 A K E -a 46 0A 69 29,-1.9 31,-1.7 -2,-0.4 2,-0.3 -0.740 6.0-162.6-111.7 161.0 -6.4 3.9 9.9 17 17 A E E -a 47 0A 134 -2,-0.3 2,-0.4 29,-0.2 31,-0.2 -0.999 3.9-167.1-145.2 144.4 -2.7 3.1 10.0 18 18 A L E -a 48 0A 26 29,-3.2 31,-1.4 -2,-0.3 2,-0.4 -0.994 5.8-179.4-136.4 130.1 -0.4 0.3 8.8 19 19 A V E +a 49 0A 89 -2,-0.4 2,-0.3 29,-0.2 31,-0.2 -0.994 16.7 140.1-132.6 131.5 3.2 -0.4 9.6 20 20 A F E -a 50 0A 16 29,-1.5 31,-1.8 -2,-0.4 2,-0.2 -0.955 44.0 -96.4-157.4 172.2 5.4 -3.2 8.3 21 21 A S E > -a 51 0A 42 -2,-0.3 3,-1.0 29,-0.2 31,-0.2 -0.605 27.9-121.4 -97.0 158.5 8.9 -4.1 7.1 22 22 A S T 3 S+ 0 0 11 29,-1.8 30,-0.1 1,-0.2 -1,-0.1 0.784 104.0 79.5 -67.0 -27.3 10.1 -4.4 3.5 23 23 A N T 3 + 0 0 118 28,-0.3 -1,-0.2 2,-0.0 29,-0.0 0.845 65.8 118.0 -48.4 -37.3 11.1 -8.0 4.2 24 24 A I < - 0 0 30 -3,-1.0 2,-0.1 1,-0.1 -4,-0.0 0.042 58.3-143.8 -34.0 132.5 7.4 -8.8 3.7 25 25 A G > - 0 0 35 1,-0.1 4,-2.9 4,-0.0 5,-0.3 -0.255 26.8 -92.0 -95.5-174.3 7.0 -11.1 0.7 26 26 A Q H > S+ 0 0 119 2,-0.2 4,-2.3 1,-0.2 5,-0.1 0.919 124.1 53.1 -64.6 -45.0 4.4 -11.5 -2.0 27 27 A H H > S+ 0 0 172 2,-0.2 4,-0.6 1,-0.1 -1,-0.2 0.931 119.3 34.5 -56.0 -49.2 2.4 -14.1 0.0 28 28 A D H >> S+ 0 0 97 2,-0.2 3,-2.4 1,-0.2 4,-1.5 0.985 115.1 53.4 -70.4 -61.1 2.3 -11.8 3.1 29 29 A L H 3X S+ 0 0 4 -4,-2.9 4,-2.5 1,-0.3 5,-0.2 0.833 99.0 68.3 -42.7 -38.4 2.0 -8.4 1.3 30 30 A D H 3X S+ 0 0 92 -4,-2.3 4,-1.6 -5,-0.3 -1,-0.3 0.881 104.1 41.9 -50.4 -42.5 -0.9 -9.9 -0.5 31 31 A T H <>S+ 0 0 49 -4,-1.5 3,-1.8 -3,-0.4 5,-1.1 0.984 104.5 55.3 -66.5 -60.1 -10.7 0.3 4.3 40 40 A I H ><5S+ 0 0 0 -4,-2.6 3,-2.6 1,-0.3 -1,-0.2 0.824 95.7 72.3 -42.0 -37.3 -10.4 2.6 1.3 41 41 A E H 3<5S+ 0 0 91 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.910 98.9 44.2 -45.6 -52.0 -13.8 1.4 0.3 42 42 A K T <<5S- 0 0 111 -3,-1.8 -1,-0.3 -4,-0.7 -2,-0.2 0.002 126.8-102.2 -85.1 30.3 -15.4 3.4 3.1 43 43 A K T < 5 + 0 0 115 -3,-2.6 2,-0.5 1,-0.2 -3,-0.2 0.884 64.9 170.3 50.9 42.8 -13.2 6.3 2.2 44 44 A Y < - 0 0 30 -5,-1.1 2,-1.0 -8,-0.1 -1,-0.2 -0.752 36.9-127.0 -90.1 125.2 -10.9 5.5 5.1 45 45 A H E -a 15 0A 95 -31,-0.6 -29,-1.9 -2,-0.5 2,-0.5 -0.581 30.1-167.5 -73.4 101.4 -7.6 7.4 5.2 46 46 A V E -aB 16 97A 0 51,-1.1 51,-1.6 -2,-1.0 2,-0.7 -0.817 7.4-154.8 -96.4 124.3 -5.0 4.6 5.5 47 47 A Q E -aB 17 96A 67 -31,-1.7 -29,-3.2 -2,-0.5 2,-0.3 -0.868 11.0-164.9-102.4 112.8 -1.5 5.7 6.4 48 48 A V E -aB 18 95A 0 47,-2.5 47,-2.4 -2,-0.7 2,-0.3 -0.736 7.1-175.5 -97.8 144.4 1.2 3.2 5.2 49 49 A T E -aB 19 94A 19 -31,-1.4 -29,-1.5 -2,-0.3 2,-0.4 -0.899 10.2-155.6-143.9 111.0 4.8 3.3 6.5 50 50 A I E -aB 20 93A 0 43,-1.7 43,-1.4 -2,-0.3 2,-0.5 -0.709 10.3-151.8 -88.7 133.0 7.6 1.0 5.2 51 51 A K E -aB 21 92A 103 -31,-1.8 -29,-1.8 -2,-0.4 2,-0.3 -0.890 10.0-164.7-107.9 132.3 10.5 0.3 7.5 52 52 A R - 0 0 68 39,-1.1 3,-0.2 -2,-0.5 39,-0.0 -0.795 24.5-101.8-113.9 156.8 14.0 -0.5 6.1 53 53 A R > - 0 0 180 -2,-0.3 2,-1.8 1,-0.2 3,-1.0 0.031 67.3 -56.0 -64.2 178.9 17.1 -2.0 7.8 54 54 A K T 3 S- 0 0 190 1,-0.3 -1,-0.2 3,-0.0 3,-0.0 -0.388 116.3 -38.3 -62.0 86.1 20.0 0.1 9.0 55 55 A D T 3 S- 0 0 141 -2,-1.8 -1,-0.3 -3,-0.2 -2,-0.1 0.904 88.5-149.2 59.6 43.2 20.8 1.7 5.7 56 56 A A < - 0 0 31 -3,-1.0 2,-2.5 1,-0.2 -1,-0.0 0.113 28.2 -95.2 -38.1 156.6 20.0 -1.5 3.8 57 57 A E S S+ 0 0 188 2,-0.0 2,-0.3 -3,-0.0 -1,-0.2 -0.273 96.4 95.3 -76.5 54.5 21.9 -2.1 0.6 58 58 A Q - 0 0 99 -2,-2.5 2,-0.1 -3,-0.0 -3,-0.0 -0.997 67.1-128.7-146.6 147.8 19.0 -0.5 -1.4 59 59 A S >> - 0 0 82 -2,-0.3 3,-1.2 1,-0.1 4,-1.1 -0.363 36.6 -99.2 -89.8 172.1 18.2 2.9 -2.9 60 60 A E H 3> S+ 0 0 77 1,-0.3 4,-1.7 2,-0.2 3,-0.4 0.887 119.0 68.7 -57.3 -41.0 14.9 4.8 -2.5 61 61 A E H 3> S+ 0 0 149 1,-0.3 4,-0.7 2,-0.2 -1,-0.3 0.829 100.1 50.3 -47.5 -35.3 13.8 3.6 -5.9 62 62 A E H X> S+ 0 0 55 -3,-1.2 4,-0.8 1,-0.2 3,-0.8 0.897 105.8 53.4 -71.6 -41.9 13.5 0.2 -4.3 63 63 A T H 3X S+ 0 0 10 -4,-1.1 4,-0.8 -3,-0.4 -2,-0.2 0.750 103.1 60.2 -64.8 -23.5 11.5 1.4 -1.3 64 64 A E H 3X S+ 0 0 92 -4,-1.7 4,-1.8 2,-0.2 -1,-0.2 0.796 92.1 68.8 -74.2 -29.3 9.0 3.0 -3.8 65 65 A E H X S+ 0 0 0 -4,-0.8 4,-2.0 1,-0.2 3,-1.3 0.941 111.2 42.5 -47.4 -59.0 4.1 1.2 -2.5 68 68 A N H 3X S+ 0 0 66 -4,-1.8 4,-2.5 -3,-0.4 -1,-0.2 0.902 105.3 64.5 -56.4 -43.8 3.2 0.6 -6.1 69 69 A Q H 3< S+ 0 0 65 -4,-2.7 -1,-0.3 1,-0.2 -2,-0.2 0.800 109.0 42.0 -50.5 -30.4 2.9 -3.2 -5.4 70 70 A I H XX S+ 0 0 0 -4,-1.4 3,-1.8 -3,-1.3 4,-0.6 0.906 113.3 48.5 -83.7 -47.5 0.0 -2.2 -3.1 71 71 A L H 3< S+ 0 0 28 -4,-2.0 3,-0.3 1,-0.3 -2,-0.2 0.701 96.8 75.0 -65.9 -18.6 -1.7 0.4 -5.3 72 72 A Q T 3< S+ 0 0 145 -4,-2.5 -1,-0.3 -5,-0.2 -2,-0.1 0.605 95.9 50.1 -69.3 -10.4 -1.4 -2.2 -8.1 73 73 A T T <4 S+ 0 0 61 -3,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.703 121.3 30.4 -98.3 -26.2 -4.3 -3.9 -6.4 74 74 A M S >X S+ 0 0 0 -4,-0.6 4,-3.0 -3,-0.3 3,-0.7 -0.259 73.4 131.9-127.5 44.8 -6.6 -0.9 -6.1 75 75 A P T 34 S+ 0 0 71 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.667 85.4 37.0 -69.7 -16.8 -5.5 1.1 -9.1 76 76 A D T 34 S+ 0 0 72 -3,-0.1 30,-0.7 -5,-0.1 31,-0.2 0.295 126.1 38.0-115.9 4.7 -9.2 1.6 -10.0 77 77 A I T <4 S+ 0 0 20 -3,-0.7 23,-0.5 1,-0.3 2,-0.3 0.516 122.4 24.3-127.0 -20.4 -10.5 1.9 -6.4 78 78 A A < - 0 0 2 -4,-3.0 -1,-0.3 21,-0.2 2,-0.3 -0.939 60.1-164.4-144.1 165.0 -7.7 3.9 -4.8 79 79 A T E -C 98 0A 52 19,-1.8 2,-2.7 -2,-0.3 19,-1.6 -0.946 46.3 -75.7-147.1 166.1 -4.9 6.4 -5.6 80 80 A F E +C 97 0A 34 -2,-0.3 3,-0.4 1,-0.2 17,-0.2 -0.371 49.3 178.3 -65.4 76.1 -1.7 7.9 -4.2 81 81 A S E S+ 0 0 37 -2,-2.7 2,-0.4 15,-0.5 -1,-0.2 0.902 76.3 18.3 -46.2 -49.4 -3.6 10.3 -1.9 82 82 A S E S-C 96 0A 59 14,-1.4 14,-0.8 -3,-0.2 -1,-0.3 -0.904 92.8-119.4-132.2 105.0 -0.3 11.6 -0.6 83 83 A R E - 0 0 189 -2,-0.4 2,-0.1 -3,-0.4 11,-0.1 -0.015 39.2-103.7 -40.1 136.9 2.9 11.0 -2.6 84 84 A P E - 0 0 30 0, 0.0 2,-0.3 0, 0.0 11,-0.2 -0.421 44.7-178.5 -69.7 139.4 5.4 8.9 -0.7 85 85 A K E -C 94 0A 99 9,-1.2 9,-1.2 -2,-0.1 2,-0.8 -0.896 36.5 -88.9-135.8 165.2 8.4 10.8 0.8 86 86 A A E -C 93 0A 57 -2,-0.3 3,-0.3 7,-0.2 7,-0.2 -0.659 51.4-179.9 -79.4 110.9 11.5 10.0 2.8 87 87 A I E > > +C 92 0A 33 5,-2.5 5,-1.7 -2,-0.8 3,-1.6 -0.677 57.1 29.0-108.9 164.5 10.7 10.1 6.5 88 88 A R G > 5S- 0 0 210 1,-0.3 3,-0.5 -2,-0.2 -1,-0.2 0.790 143.5 -47.6 59.0 27.8 12.7 9.6 9.7 89 89 A G G 3 5S- 0 0 85 -3,-0.3 -1,-0.3 1,-0.2 -2,-0.1 0.509 103.8 -62.0 91.5 5.6 15.7 10.8 7.7 90 90 A G G < 5S+ 0 0 16 -3,-1.6 -1,-0.2 2,-0.3 -3,-0.2 0.142 109.7 115.6 104.8 -19.0 14.9 8.6 4.7 91 91 A T T < 5S+ 0 0 69 -3,-0.5 -39,-1.1 -5,-0.1 2,-0.3 0.739 88.8 13.0 -54.6 -22.6 15.3 5.3 6.7 92 92 A A E