==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 20-MAY-05 2CRU . COMPND 2 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGASHIMA,K.IZUMI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN . 118 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 10862.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 81 68.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 53 44.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 116 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 143.2 19.5 3.9 17.1 2 2 A S - 0 0 98 1,-0.1 2,-1.0 2,-0.1 4,-0.1 -0.204 360.0-153.6 -46.8 111.2 20.5 7.1 15.4 3 3 A S - 0 0 123 3,-0.1 2,-0.8 2,-0.0 -1,-0.1 -0.786 64.5 -30.0 -96.5 98.4 23.9 7.9 17.1 4 4 A G S S+ 0 0 82 -2,-1.0 2,-0.2 0, 0.0 -2,-0.1 -0.820 125.6 46.0 103.6 -99.2 24.4 11.6 16.9 5 5 A S - 0 0 113 -2,-0.8 -2,-0.0 1,-0.1 0, 0.0 -0.508 55.3-170.0 -82.7 151.0 22.7 13.1 13.9 6 6 A S - 0 0 111 -2,-0.2 -1,-0.1 -4,-0.1 2,-0.1 0.836 54.8 -66.1-103.5 -60.0 19.2 12.2 12.8 7 7 A G - 0 0 65 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.262 39.6-145.5 160.2 108.4 18.6 13.7 9.4 8 8 A L - 0 0 129 -2,-0.1 -3,-0.0 1,-0.1 0, 0.0 -0.547 12.9-140.1 -86.3 151.7 18.3 17.2 8.1 9 9 A R - 0 0 242 -2,-0.2 -1,-0.1 2,-0.0 0, 0.0 -0.193 31.6-175.2-102.5 40.0 16.0 18.2 5.3 10 10 A R - 0 0 194 1,-0.1 2,-0.6 2,-0.0 -2,-0.0 0.016 18.0-145.1 -36.7 136.6 18.5 20.6 3.6 11 11 A Q + 0 0 181 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.669 59.5 95.0-112.7 75.5 16.9 22.4 0.7 12 12 A R - 0 0 231 -2,-0.6 2,-0.3 2,-0.0 -2,-0.0 -0.889 56.5-142.9-164.7 130.1 19.7 22.7 -1.9 13 13 A L + 0 0 166 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.699 23.9 169.3 -96.9 148.4 20.9 20.7 -4.9 14 14 A A - 0 0 94 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.987 39.8 -85.0-157.4 147.4 24.5 20.2 -5.9 15 15 A E - 0 0 194 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.023 56.1 -96.8 -48.4 155.2 26.5 18.1 -8.3 16 16 A L - 0 0 107 1,-0.1 2,-0.7 97,-0.0 -1,-0.1 -0.173 30.0-117.5 -71.3 169.1 27.5 14.6 -7.2 17 17 A Q - 0 0 108 98,-0.1 2,-1.0 2,-0.0 -1,-0.1 -0.859 20.5-155.6-115.4 97.0 30.8 13.7 -5.6 18 18 A A - 0 0 93 -2,-0.7 2,-0.5 96,-0.1 96,-0.0 -0.592 13.4-159.2 -74.3 103.4 32.8 11.2 -7.7 19 19 A K - 0 0 98 -2,-1.0 -2,-0.0 2,-0.1 -1,-0.0 -0.729 22.1-111.7 -88.4 127.7 35.1 9.5 -5.3 20 20 A H S S- 0 0 167 -2,-0.5 -1,-0.1 2,-0.1 0, 0.0 -0.172 81.0 -12.5 -54.5 146.6 38.2 7.8 -6.8 21 21 A G S S- 0 0 70 1,-0.1 -2,-0.1 2,-0.0 0, 0.0 -0.299 92.5 -92.8 61.0-140.6 38.2 4.0 -6.6 22 22 A D - 0 0 136 1,-0.1 -1,-0.1 5,-0.0 -2,-0.1 -0.875 7.9-139.6-175.0 140.0 35.6 2.5 -4.3 23 23 A P > - 0 0 59 0, 0.0 3,-0.6 0, 0.0 2,-0.5 0.936 38.0-173.3 -69.8 -49.1 35.2 1.3 -0.6 24 24 A G T 3> + 0 0 25 1,-0.2 4,-2.5 2,-0.1 3,-0.2 -0.779 63.1 0.2 94.5-129.4 33.1 -1.8 -1.4 25 25 A D H 3> S+ 0 0 130 -2,-0.5 4,-2.7 2,-0.2 5,-0.3 0.922 123.5 69.0 -63.5 -45.7 31.7 -3.8 1.6 26 26 A A H <4 S+ 0 0 82 -3,-0.6 4,-0.4 1,-0.2 -1,-0.2 0.885 114.7 27.1 -37.7 -56.5 33.2 -1.4 4.1 27 27 A A H >> S+ 0 0 44 2,-0.2 3,-2.3 -3,-0.2 4,-1.6 0.919 113.6 66.4 -75.6 -46.2 30.8 1.3 3.0 28 28 A Q H 3X S+ 0 0 110 -4,-2.5 4,-3.0 1,-0.3 5,-0.5 0.897 90.0 64.9 -39.5 -57.3 28.0 -1.0 1.8 29 29 A Q H 3X S+ 0 0 112 -4,-2.7 4,-0.6 1,-0.2 -1,-0.3 0.819 108.1 43.2 -36.5 -40.8 27.4 -2.3 5.3 30 30 A E H X> S+ 0 0 132 -3,-2.3 4,-1.7 -4,-0.4 3,-0.7 0.958 113.9 47.9 -73.1 -53.6 26.3 1.3 6.0 31 31 A A H 3X S+ 0 0 56 -4,-1.6 4,-1.9 1,-0.3 3,-0.3 0.933 110.8 51.4 -52.6 -51.8 24.2 1.8 2.8 32 32 A K H 3< S+ 0 0 97 -4,-3.0 4,-0.4 1,-0.2 -1,-0.3 0.774 105.8 59.5 -57.9 -26.1 22.5 -1.5 3.3 33 33 A H H XX S+ 0 0 90 -3,-0.7 3,-1.3 -4,-0.6 4,-0.8 0.934 103.8 47.1 -68.8 -47.8 21.7 -0.4 6.8 34 34 A R H >X S+ 0 0 178 -4,-1.7 4,-2.5 -3,-0.3 3,-1.0 0.880 102.8 63.6 -61.7 -39.2 19.7 2.7 5.7 35 35 A E H 3X S+ 0 0 130 -4,-1.9 4,-0.8 1,-0.3 -1,-0.3 0.710 105.1 48.5 -58.6 -19.1 17.8 0.7 3.1 36 36 A A H <> S+ 0 0 33 -3,-1.3 4,-1.1 -4,-0.4 -1,-0.3 0.684 109.6 51.0 -93.2 -22.4 16.4 -1.2 6.2 37 37 A E H - 0 0 65 38,-1.6 4,-2.6 -2,-0.6 5,-0.2 -0.243 36.2 -96.7 -66.1 156.5 -1.4 -0.4 11.0 49 49 A Q H > S+ 0 0 168 1,-0.2 4,-1.6 2,-0.2 -1,-0.1 0.789 127.9 53.8 -42.9 -31.3 -0.4 -1.7 14.4 50 50 A S H > S+ 0 0 70 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.986 107.5 44.3 -69.6 -61.2 -3.0 -4.4 13.6 51 51 A A H > S+ 0 0 0 35,-0.5 4,-2.8 1,-0.2 -2,-0.2 0.841 109.9 60.9 -52.5 -35.5 -1.7 -5.6 10.3 52 52 A R H X S+ 0 0 95 -4,-2.6 4,-2.0 1,-0.2 5,-0.4 0.967 103.2 46.8 -57.1 -57.6 1.8 -5.5 11.8 53 53 A A H X S+ 0 0 68 -4,-1.6 4,-2.0 1,-0.2 -1,-0.2 0.882 113.3 51.4 -52.6 -41.8 1.0 -8.1 14.4 54 54 A R H X S+ 0 0 74 -4,-1.8 4,-1.4 2,-0.2 -1,-0.2 0.961 113.3 43.0 -61.3 -54.2 -0.6 -10.3 11.8 55 55 A L H >X S+ 0 0 7 -4,-2.8 4,-2.2 2,-0.2 3,-2.1 0.989 114.3 47.1 -55.3 -71.2 2.3 -10.2 9.4 56 56 A S H 3X S+ 0 0 73 -4,-2.0 4,-1.1 1,-0.3 -1,-0.2 0.871 106.9 60.0 -37.3 -52.7 5.2 -10.6 11.9 57 57 A N H 3X S+ 0 0 90 -4,-2.0 4,-0.7 -5,-0.4 3,-0.4 0.867 110.8 41.4 -45.9 -42.5 3.2 -13.5 13.4 58 58 A L H S+ 0 0 76 0, 0.0 4,-2.0 0, 0.0 -1,-0.1 0.902 78.9 47.3 -69.8 -43.2 9.6 -16.1 6.8 64 64 A E H > S+ 0 0 170 2,-0.2 4,-1.8 3,-0.1 -2,-0.1 0.948 114.5 46.2 -64.4 -50.7 10.2 -16.5 3.1 65 65 A K H > S+ 0 0 56 1,-0.2 4,-1.4 2,-0.2 3,-0.5 0.984 115.6 43.0 -55.4 -66.3 6.6 -16.1 2.2 66 66 A T H X S+ 0 0 1 -4,-1.8 4,-2.0 1,-0.2 3,-0.3 0.875 107.4 64.8 -48.3 -42.5 5.8 -13.1 4.4 67 67 A K H >X S+ 0 0 121 -4,-2.0 4,-1.4 1,-0.3 3,-0.6 0.936 99.9 49.3 -46.5 -58.2 9.1 -11.6 3.3 68 68 A A H 3X S+ 0 0 21 -4,-1.8 4,-1.7 -3,-0.5 -1,-0.3 0.865 108.3 55.9 -51.0 -39.6 8.0 -11.3 -0.3 69 69 A V H 3X S+ 0 0 0 -4,-1.4 4,-2.2 -3,-0.3 -1,-0.3 0.895 99.4 59.8 -61.4 -41.5 4.8 -9.6 0.9 70 70 A E H X S+ 0 0 22 -4,-1.7 4,-1.5 -5,-0.2 3,-0.6 0.970 111.9 43.4 -59.1 -57.5 6.7 -1.1 -0.1 75 75 A Q H 3X S+ 0 0 64 -4,-2.7 4,-2.0 1,-0.3 -1,-0.2 0.861 110.3 58.5 -57.0 -37.2 6.5 -1.0 -3.9 76 76 A M H 3X>S+ 0 0 10 -4,-2.5 4,-2.6 -5,-0.3 5,-2.3 0.871 102.6 54.8 -61.1 -37.9 2.8 -0.4 -3.7 77 77 A A H <<5S+ 0 0 30 -4,-1.7 -2,-0.2 -3,-0.6 -1,-0.2 0.984 107.8 45.6 -59.5 -62.2 3.4 2.7 -1.6 78 78 A R H <5S+ 0 0 208 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.927 115.9 47.7 -46.7 -55.5 5.7 4.5 -4.0 79 79 A Y H <5S- 0 0 192 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.969 115.3-112.3 -51.4 -64.4 3.4 3.7 -7.0 80 80 A G T <5S+ 0 0 61 -4,-2.6 -3,-0.2 -5,-0.2 -2,-0.1 0.589 78.4 119.1 131.5 35.2 0.2 4.8 -5.3 81 81 A Q < + 0 0 102 -5,-2.3 2,-0.8 -8,-0.1 -4,-0.2 0.834 57.1 79.4 -91.7 -40.1 -1.9 1.7 -4.7 82 82 A L + 0 0 34 -6,-0.6 -1,-0.1 -9,-0.2 3,-0.1 -0.604 55.6 178.6 -74.8 108.3 -2.1 1.9 -0.9 83 83 A S - 0 0 116 -2,-0.8 2,-0.2 1,-0.2 -1,-0.2 0.992 62.1 -6.7 -72.4 -67.8 -4.8 4.5 -0.1 84 84 A E S S- 0 0 156 1,-0.1 -1,-0.2 -38,-0.1 -38,-0.0 -0.770 101.7 -51.9-126.3 171.8 -4.9 4.4 3.7 85 85 A K - 0 0 126 -2,-0.2 -38,-0.2 1,-0.1 -39,-0.1 -0.169 64.4-123.5 -45.5 121.4 -3.4 2.3 6.5 86 86 A V B -a 47 0A 20 -40,-2.6 -38,-1.6 1,-0.1 -35,-0.5 -0.356 23.9-144.1 -70.3 150.2 -4.1 -1.3 5.7 87 87 A S > - 0 0 62 -40,-0.1 4,-2.4 -37,-0.1 5,-0.2 -0.745 30.5 -93.8-114.4 162.8 -5.9 -3.5 8.2 88 88 A E H > S+ 0 0 94 -2,-0.3 4,-2.7 1,-0.2 5,-0.3 0.888 124.5 51.4 -35.4 -65.7 -5.6 -7.1 9.3 89 89 A Q H > S+ 0 0 158 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.904 113.5 45.0 -39.9 -58.8 -8.4 -8.2 6.8 90 90 A G H >> S+ 0 0 24 2,-0.2 4,-1.7 1,-0.2 3,-0.8 0.964 113.5 48.0 -52.3 -61.9 -6.6 -6.4 4.0 91 91 A L H >X S+ 0 0 0 -4,-2.4 4,-1.7 1,-0.3 3,-1.4 0.934 106.3 57.1 -44.2 -61.8 -3.1 -7.6 4.7 92 92 A I H 3X S+ 0 0 46 -4,-2.7 4,-0.7 1,-0.3 -1,-0.3 0.846 108.0 49.4 -38.5 -44.7 -4.3 -11.2 5.1 93 93 A E H X< S+ 0 0 139 -4,-1.7 3,-0.7 -3,-0.8 -1,-0.3 0.861 103.0 61.3 -66.0 -36.3 -5.6 -11.0 1.6 94 94 A I H XX S+ 0 0 22 -4,-1.7 3,-2.9 -3,-1.4 4,-1.7 0.914 92.8 64.1 -56.6 -45.8 -2.3 -9.5 0.3 95 95 A L H 3X S+ 0 0 17 -4,-1.7 4,-0.7 1,-0.3 -1,-0.2 0.859 104.2 47.8 -46.4 -40.4 -0.5 -12.7 1.3 96 96 A K H << S+ 0 0 149 -4,-0.7 -1,-0.3 -3,-0.7 -2,-0.2 -0.013 110.5 56.2 -92.2 29.7 -2.6 -14.5 -1.3 97 97 A K H <> S+ 0 0 103 -3,-2.9 4,-1.7 3,-0.1 -2,-0.2 0.648 97.9 51.7-123.8 -46.5 -1.8 -11.8 -3.8 98 98 A V H < S+ 0 0 10 -4,-1.7 -2,-0.1 1,-0.2 -3,-0.1 0.835 110.0 53.7 -64.1 -33.1 2.0 -11.5 -4.1 99 99 A S T < S+ 0 0 96 -4,-0.7 -1,-0.2 -5,-0.3 -3,-0.1 0.950 105.5 50.7 -66.8 -50.9 2.2 -15.3 -4.7 100 100 A Q T 4 S+ 0 0 173 1,-0.1 2,-0.6 2,-0.1 -1,-0.2 0.883 104.9 66.8 -54.5 -41.2 -0.3 -15.3 -7.6 101 101 A Q S < S- 0 0 140 -4,-1.7 -1,-0.1 1,-0.1 -4,-0.1 -0.751 99.1-112.0 -88.5 118.7 1.7 -12.5 -9.3 102 102 A T + 0 0 130 -2,-0.6 2,-0.3 1,-0.0 -1,-0.1 0.021 45.7 168.3 -43.4 152.5 5.1 -13.6 -10.4 103 103 A E + 0 0 71 -4,-0.1 2,-0.3 2,-0.0 -35,-0.0 -0.936 10.3 167.4-170.3 146.6 8.0 -12.1 -8.5 104 104 A K - 0 0 134 -2,-0.3 2,-1.7 -36,-0.0 0, 0.0 -0.923 55.7 -54.2-153.4 176.1 11.8 -12.4 -8.0 105 105 A T - 0 0 115 -2,-0.3 2,-0.6 1,-0.0 -2,-0.0 -0.383 62.5-178.3 -61.3 87.8 14.9 -10.7 -6.6 106 106 A T - 0 0 95 -2,-1.7 2,-0.3 2,-0.0 -1,-0.0 -0.825 4.1-170.4 -97.0 122.1 14.5 -7.5 -8.5 107 107 A T - 0 0 103 -2,-0.6 2,-0.5 2,-0.0 -2,-0.0 -0.838 13.2-140.0-112.4 149.3 17.3 -4.9 -8.0 108 108 A V - 0 0 131 -2,-0.3 2,-0.6 2,-0.0 -2,-0.0 -0.919 7.8-156.6-111.8 130.8 17.4 -1.2 -9.0 109 109 A K + 0 0 164 -2,-0.5 2,-0.3 2,-0.0 -2,-0.0 -0.909 42.5 106.1-109.6 112.3 20.5 0.4 -10.4 110 110 A F - 0 0 201 -2,-0.6 2,-0.6 0, 0.0 -2,-0.0 -0.969 67.8 -84.5-167.8 175.7 20.7 4.2 -10.0 111 111 A N + 0 0 100 -2,-0.3 3,-0.1 1,-0.2 -2,-0.0 -0.862 46.6 151.9-101.0 119.3 22.2 7.1 -8.2 112 112 A R - 0 0 195 -2,-0.6 2,-0.4 1,-0.3 -1,-0.2 0.808 68.0 -0.9-106.8 -62.6 20.5 8.1 -4.9 113 113 A S - 0 0 98 -97,-0.0 -1,-0.3 0, 0.0 -97,-0.0 -0.996 65.1-137.7-138.6 131.8 23.1 9.7 -2.6 114 114 A G - 0 0 37 -2,-0.4 -96,-0.1 -3,-0.1 -3,-0.0 -0.625 24.3-115.7 -90.0 146.3 26.8 10.3 -3.1 115 115 A P - 0 0 75 0, 0.0 2,-0.3 0, 0.0 -98,-0.1 -0.085 28.8-162.1 -69.7 173.6 29.5 9.7 -0.5 116 116 A S - 0 0 86 -97,-0.0 2,-0.2 0, 0.0 -97,-0.0 -0.989 31.3 -83.9-158.6 152.9 31.7 12.3 1.1 117 117 A S 0 0 114 -2,-0.3 -98,-0.0 1,-0.2 0, 0.0 -0.403 360.0 360.0 -62.2 124.4 34.9 12.6 3.1 118 118 A G 0 0 129 -2,-0.2 -1,-0.2 0, 0.0 0, 0.0 0.286 360.0 360.0-160.3 360.0 34.2 12.1 6.8