==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, SIGNALING PROTEIN 20-MAY-05 2CS4 . COMPND 2 MOLECULE: PROTEIN C12ORF2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7014.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 65.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 16.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-129.4 8.1 -1.2 -15.6 2 2 A S + 0 0 123 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.645 360.0 165.5 -99.5 157.4 6.5 1.6 -13.6 3 3 A S - 0 0 119 -2,-0.2 2,-0.3 20,-0.0 20,-0.0 -0.952 12.1-178.9-168.0 147.7 8.2 4.4 -11.6 4 4 A G - 0 0 58 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.853 17.0-161.3-159.1 119.0 7.4 7.7 -10.0 5 5 A S S S+ 0 0 138 -2,-0.3 2,-0.2 2,-0.0 -1,-0.1 0.971 81.3 68.4 -61.7 -56.8 9.7 10.2 -8.1 6 6 A S + 0 0 105 16,-0.1 2,-0.3 17,-0.0 16,-0.0 -0.479 69.8 149.9 -68.9 128.8 6.8 12.0 -6.4 7 7 A G - 0 0 34 -2,-0.2 2,-0.4 18,-0.0 18,-0.2 -0.913 37.7-121.5-150.6 176.2 5.0 9.9 -3.8 8 8 A M B -A 24 0A 79 16,-1.8 2,-0.7 -2,-0.3 16,-0.6 -0.965 24.7-118.2-129.0 144.9 3.0 9.9 -0.6 9 9 A E - 0 0 139 -2,-0.4 2,-0.6 13,-0.1 13,-0.2 -0.711 27.6-160.9 -84.3 116.2 3.7 8.2 2.7 10 10 A L - 0 0 10 11,-1.0 2,-0.8 -2,-0.7 11,-0.3 -0.872 11.4-141.0-102.2 117.2 0.8 5.7 3.6 11 11 A K + 0 0 114 -2,-0.6 71,-0.6 9,-0.1 2,-0.4 -0.656 35.9 159.8 -79.1 108.0 0.6 4.7 7.2 12 12 A V E -Bc 19 82B 0 7,-0.8 7,-2.1 -2,-0.8 2,-0.5 -0.994 41.9-121.6-135.3 129.7 -0.3 1.0 7.3 13 13 A W E -Bc 18 83B 83 69,-3.1 71,-1.4 -2,-0.4 2,-0.5 -0.552 33.6-179.7 -71.2 116.2 0.1 -1.4 10.2 14 14 A V E > -B 17 0B 4 3,-2.2 3,-1.3 -2,-0.5 71,-0.1 -0.923 69.4 -20.7-124.3 107.0 2.3 -4.3 8.9 15 15 A D T 3 S- 0 0 134 -2,-0.5 -1,-0.1 69,-0.3 3,-0.1 0.855 126.7 -52.7 66.8 35.6 3.0 -7.1 11.4 16 16 A G T 3 S+ 0 0 65 1,-0.1 2,-0.5 0, 0.0 -1,-0.3 0.239 127.6 95.6 85.1 -15.1 2.2 -4.9 14.3 17 17 A V E < S-B 14 0B 77 -3,-1.3 -3,-2.2 -5,-0.0 2,-0.6 -0.945 79.1-124.8-115.1 124.1 4.6 -2.3 13.0 18 18 A Q E -B 13 0B 55 -2,-0.5 2,-0.5 -5,-0.3 -5,-0.3 -0.514 29.5-160.9 -67.8 111.4 3.4 0.6 10.9 19 19 A R E -B 12 0B 137 -7,-2.1 -7,-0.8 -2,-0.6 2,-0.2 -0.837 9.8-134.8-100.0 128.9 5.5 0.5 7.7 20 20 A I - 0 0 69 -2,-0.5 2,-0.5 -9,-0.1 -9,-0.1 -0.514 13.3-154.8 -80.8 147.7 5.7 3.6 5.5 21 21 A V - 0 0 21 -11,-0.3 -11,-1.0 -2,-0.2 2,-0.4 -0.960 3.8-161.1-129.1 115.6 5.3 3.4 1.7 22 22 A C S S+ 0 0 113 -2,-0.5 -13,-0.1 -13,-0.2 3,-0.1 -0.776 71.1 38.4 -96.9 136.6 6.8 6.0 -0.6 23 23 A G S S+ 0 0 29 1,-0.4 -1,-0.2 -2,-0.4 5,-0.2 -0.098 75.3 126.9 120.6 -35.2 5.6 6.4 -4.2 24 24 A V B +A 8 0A 8 -16,-0.6 -16,-1.8 -3,-0.3 -1,-0.4 -0.299 35.2 176.2 -58.4 135.6 1.9 5.9 -3.6 25 25 A T - 0 0 37 -18,-0.2 3,-0.3 -3,-0.1 42,-0.2 -0.920 49.5 -87.5-139.7 164.6 -0.2 8.7 -5.1 26 26 A E S S+ 0 0 105 -2,-0.3 42,-0.3 1,-0.3 41,-0.1 0.842 129.6 50.2 -37.0 -45.3 -3.9 9.7 -5.5 27 27 A V S S+ 0 0 115 38,-0.1 -1,-0.3 40,-0.1 -3,-0.1 0.958 87.7 92.4 -61.3 -53.3 -3.7 7.7 -8.8 28 28 A T S S- 0 0 22 -3,-0.3 39,-0.4 -5,-0.2 -5,-0.0 -0.213 74.3-144.8 -47.5 113.6 -2.2 4.6 -7.2 29 29 A T > - 0 0 34 36,-0.2 4,-0.8 37,-0.1 36,-0.3 -0.123 24.9 -99.2 -75.4 177.1 -5.2 2.4 -6.4 30 30 A C H >> S+ 0 0 4 34,-2.4 4,-3.1 31,-0.3 3,-1.0 0.906 121.8 59.4 -64.8 -43.0 -5.5 0.1 -3.3 31 31 A Q H 3> S+ 0 0 104 31,-1.6 4,-1.2 1,-0.3 -1,-0.2 0.851 104.1 51.9 -54.4 -36.2 -4.6 -2.9 -5.3 32 32 A E H 3> S+ 0 0 104 30,-0.3 4,-1.0 -3,-0.2 -1,-0.3 0.766 117.0 40.0 -72.1 -25.8 -1.3 -1.3 -6.2 33 33 A V H - E 0 56B 72 3,-1.3 3,-0.9 -2,-0.6 27,-0.1 -0.996 67.5 -17.8-146.7 138.3 -12.0 4.0 13.1 54 54 A R T 3 S- 0 0 208 -2,-0.3 3,-0.1 1,-0.3 26,-0.0 0.805 131.1 -50.3 35.0 39.1 -13.9 4.5 16.4 55 55 A D T 3 S+ 0 0 140 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.925 109.0 135.0 69.1 46.1 -13.9 0.7 16.5 56 56 A T E < -E 53 0B 69 -3,-0.9 -3,-1.3 2,-0.0 2,-0.5 -0.959 37.4-164.2-132.4 115.7 -15.2 0.3 13.0 57 57 A E E +E 52 0B 92 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.2 -0.869 14.0 171.8-102.5 123.6 -13.8 -2.2 10.5 58 58 A R E -E 51 0B 184 -7,-1.0 -7,-1.5 -2,-0.5 2,-0.2 -0.991 25.0-135.1-135.1 127.6 -14.6 -1.7 6.8 59 59 A H E -E 50 0B 120 -2,-0.4 2,-0.2 -9,-0.2 -9,-0.2 -0.527 20.8-147.6 -80.1 145.3 -13.2 -3.6 3.8 60 60 A L - 0 0 28 -11,-0.8 -11,-0.2 -2,-0.2 -1,-0.0 -0.659 14.9-108.8-109.5 166.6 -12.2 -1.7 0.7 61 61 A A - 0 0 18 -2,-0.2 3,-0.3 1,-0.1 -31,-0.3 -0.591 19.6-123.6 -94.5 156.8 -12.2 -2.5 -3.0 62 62 A P S S+ 0 0 74 0, 0.0 -31,-1.6 0, 0.0 -30,-0.3 0.697 114.4 50.4 -69.8 -19.6 -9.1 -3.2 -5.2 63 63 A H S S+ 0 0 133 -33,-0.1 2,-0.2 -34,-0.1 -3,-0.0 0.666 92.0 94.4 -91.1 -20.2 -10.2 -0.5 -7.6 64 64 A E S S- 0 0 75 -3,-0.3 -34,-2.4 -35,-0.1 -33,-0.2 -0.499 79.4-119.2 -75.5 140.7 -10.7 2.1 -4.8 65 65 A N > - 0 0 46 -36,-0.3 4,-2.2 -2,-0.2 -36,-0.2 -0.548 8.5-143.1 -81.8 144.0 -7.8 4.4 -4.1 66 66 A P H > S+ 0 0 1 0, 0.0 4,-1.1 0, 0.0 5,-0.1 0.945 100.7 45.6 -69.7 -50.8 -6.1 4.4 -0.6 67 67 A I H > S+ 0 0 17 -39,-0.4 4,-2.6 1,-0.2 3,-0.3 0.893 116.9 46.4 -60.7 -41.3 -5.4 8.1 -0.4 68 68 A I H > S+ 0 0 64 -42,-0.3 4,-1.9 1,-0.2 -1,-0.2 0.932 102.3 62.3 -67.2 -47.3 -8.9 8.9 -1.6 69 69 A S H < S+ 0 0 21 -4,-2.2 4,-0.4 1,-0.2 -1,-0.2 0.799 114.1 37.9 -48.6 -30.5 -10.6 6.4 0.7 70 70 A L H >X S+ 0 0 30 -4,-1.1 3,-1.6 -3,-0.3 4,-1.1 0.917 101.9 67.9 -87.1 -52.6 -9.2 8.5 3.5 71 71 A N H 3< S+ 0 0 78 -4,-2.6 -2,-0.2 1,-0.3 -3,-0.1 0.820 87.6 74.7 -35.1 -42.3 -9.6 12.0 2.1 72 72 A K T 3< S+ 0 0 173 -4,-1.9 -1,-0.3 1,-0.2 3,-0.2 0.899 98.2 42.4 -38.0 -61.1 -13.3 11.4 2.5 73 73 A W T X4 S+ 0 0 102 -3,-1.6 2,-1.4 -4,-0.4 3,-0.8 0.925 81.9 165.3 -55.0 -48.4 -13.1 11.9 6.2 74 74 A G G >< S+ 0 0 45 -4,-1.1 3,-1.7 1,-0.3 4,-0.4 -0.506 70.9 38.1 69.7 -93.8 -10.8 14.9 5.8 75 75 A Q G 3 S+ 0 0 172 -2,-1.4 -1,-0.3 1,-0.3 3,-0.3 0.894 131.5 33.1 -55.3 -42.7 -11.0 16.4 9.3 76 76 A Y G < S+ 0 0 129 -3,-0.8 4,-0.4 1,-0.2 -1,-0.3 -0.239 89.7 106.5-108.8 42.7 -11.1 13.0 10.8 77 77 A A S X S+ 0 0 18 -3,-1.7 3,-0.5 -4,-0.2 -1,-0.2 0.870 75.0 52.6 -85.8 -42.3 -8.9 11.3 8.2 78 78 A S T 3 S+ 0 0 98 -4,-0.4 -2,-0.1 -3,-0.3 -1,-0.1 0.925 100.1 62.5 -59.7 -46.8 -5.7 10.9 10.3 79 79 A D T 3 S+ 0 0 90 -4,-0.2 -1,-0.2 2,-0.1 2,-0.2 0.849 88.2 88.7 -47.1 -38.6 -7.6 9.2 13.1 80 80 A V < - 0 0 8 -3,-0.5 2,-0.3 -4,-0.4 -27,-0.2 -0.440 68.4-158.5 -66.8 131.6 -8.4 6.5 10.7 81 81 A Q E - D 0 52B 77 -29,-2.1 -29,-2.5 -2,-0.2 2,-0.4 -0.787 7.9-132.9-112.5 156.3 -5.7 3.7 10.6 82 82 A L E -cD 12 51B 4 -71,-0.6 -69,-3.1 -2,-0.3 2,-0.4 -0.874 16.8-172.4-110.8 141.6 -4.9 1.2 7.9 83 83 A I E -cD 13 50B 34 -33,-2.1 -33,-1.7 -2,-0.4 2,-0.9 -0.953 17.8-142.9-137.4 116.4 -4.3 -2.5 8.5 84 84 A L E + D 0 49B 15 -71,-1.4 -69,-0.3 -2,-0.4 2,-0.3 -0.667 30.5 178.2 -80.4 106.2 -3.0 -5.0 5.8 85 85 A R E - D 0 48B 153 -37,-1.0 -37,-2.1 -2,-0.9 2,-0.5 -0.734 27.5-120.3-108.4 158.0 -4.9 -8.2 6.4 86 86 A R E + D 0 47B 128 -2,-0.3 -39,-0.2 -39,-0.2 -2,-0.0 -0.860 22.0 180.0-101.9 125.5 -4.7 -11.5 4.4 87 87 A T E S+ 0 0 99 -41,-1.7 -40,-0.2 -2,-0.5 -1,-0.1 0.432 73.1 28.7 -99.5 -2.6 -7.9 -12.8 2.8 88 88 A G E S- D 0 46B 12 -42,-1.0 -42,-0.5 0, 0.0 -1,-0.2 -0.984 82.0-106.4-159.3 146.2 -6.2 -15.9 1.3 89 89 A P - 0 0 116 0, 0.0 -43,-0.1 0, 0.0 -2,-0.0 -0.267 41.4-105.1 -69.8 157.4 -3.3 -18.2 2.0 90 90 A S - 0 0 81 1,-0.1 -45,-0.1 -45,-0.1 3,-0.0 -0.212 32.9-143.9 -77.1 171.5 -0.1 -18.1 -0.1 91 91 A G - 0 0 48 -47,-0.4 2,-0.6 1,-0.1 -47,-0.1 -0.412 43.2 -40.3-121.2-162.3 0.9 -20.7 -2.7 92 92 A P + 0 0 132 0, 0.0 2,-0.3 0, 0.0 3,-0.3 -0.535 63.6 178.3 -69.8 111.6 4.0 -22.5 -4.1 93 93 A S + 0 0 81 -2,-0.6 -50,-0.0 1,-0.2 -3,-0.0 -0.832 56.0 22.2-116.4 154.7 6.8 -19.9 -4.3 94 94 A S 0 0 136 -2,-0.3 -1,-0.2 1,-0.2 0, 0.0 0.892 360.0 360.0 60.1 41.2 10.4 -20.3 -5.4 95 95 A G 0 0 114 -3,-0.3 -1,-0.2 0, 0.0 -2,-0.1 0.490 360.0 360.0 92.4 360.0 9.6 -23.4 -7.4